Wall clock time and date at job start Tue Mar 31 2020 05:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46905 * 2 1 4 4 H 1.09000 * 109.46887 * 54.81557 * 3 2 1 5 5 C 1.50700 * 109.47063 * 174.81948 * 3 2 1 6 6 H 1.08000 * 119.99718 * 119.99987 * 5 3 2 7 7 C 1.37872 * 119.99972 * 299.99714 * 5 3 2 8 8 N 1.31515 * 119.99946 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99951 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46889 * 60.00270 * 9 7 5 11 11 H 1.48499 * 109.47328 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47247 * 300.00351 * 9 7 5 13 13 N 1.46905 * 109.46981 * 294.82355 * 3 2 1 14 14 C 1.46898 * 110.99975 * 153.84689 * 13 3 2 15 15 C 1.52997 * 109.46866 * 175.13004 * 14 13 3 16 16 C 1.52999 * 109.47156 * 180.02562 * 15 14 13 17 17 O 1.42900 * 109.47429 * 180.02562 * 16 15 14 18 18 C 1.35947 * 117.00181 * 179.97438 * 17 16 15 19 19 C 1.38704 * 120.02747 * 359.71845 * 18 17 16 20 20 C 1.38155 * 119.96386 * 179.78837 * 19 18 17 21 21 C 1.38454 * 120.03095 * 0.49472 * 20 19 18 22 22 F 1.35106 * 119.96708 * 179.72245 * 21 20 19 23 23 C 1.38446 * 120.06106 * 359.73689 * 21 20 19 24 24 C 1.38152 * 120.03280 * 0.03251 * 23 21 20 25 25 H 1.08996 * 109.47160 * 306.24929 * 1 2 3 26 26 H 1.08998 * 109.47111 * 66.25389 * 1 2 3 27 27 H 1.09001 * 109.46262 * 186.25478 * 1 2 3 28 28 H 1.08996 * 109.47489 * 240.00333 * 2 1 3 29 29 H 1.09002 * 109.47033 * 119.99169 * 2 1 3 30 30 H 0.97009 * 119.99364 * 180.02562 * 8 7 5 31 31 H 1.00897 * 110.99902 * 29.88401 * 13 3 2 32 32 H 1.08997 * 109.47017 * 55.13460 * 14 13 3 33 33 H 1.08996 * 109.47064 * 295.12847 * 14 13 3 34 34 H 1.09007 * 109.47207 * 59.99928 * 15 14 13 35 35 H 1.09000 * 109.47638 * 299.99881 * 15 14 13 36 36 H 1.08995 * 109.47583 * 59.99969 * 16 15 14 37 37 H 1.09005 * 109.46776 * 299.99672 * 16 15 14 38 38 H 1.07997 * 120.02029 * 0.02562 * 19 18 17 39 39 H 1.07998 * 119.98220 * 180.20908 * 20 19 18 40 40 H 1.08006 * 119.98824 * 179.97438 * 23 21 20 41 41 H 1.08004 * 120.01702 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6028 1.9824 0.8399 5 6 3.5415 1.4445 0.1283 6 1 4.1491 1.8883 -0.6465 7 6 4.1396 0.8799 1.2348 8 7 3.3997 0.3391 2.1781 9 14 6.0008 0.8830 1.3942 10 1 6.4952 2.2833 1.3945 11 1 6.3900 0.2198 2.6646 12 1 6.5968 0.1479 0.2498 13 7 1.6550 2.0980 -1.2571 14 6 1.5490 3.5526 -1.0814 15 6 1.2666 4.2103 -2.4336 16 6 1.1569 5.7254 -2.2508 17 8 0.8926 6.3397 -3.5136 18 6 0.7649 7.6931 -3.5269 19 6 0.8858 8.4133 -2.3477 20 6 0.7601 9.7891 -2.3635 21 6 0.5036 10.4479 -3.5539 22 9 0.3754 11.7928 -3.5669 23 6 0.3780 9.7297 -4.7308 24 6 0.5078 8.3544 -4.7188 25 1 -0.3633 0.6076 0.8287 26 1 -0.3633 0.4138 -0.9406 27 1 -0.3632 -1.0216 0.1120 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8901 30 1 3.8206 -0.0579 2.9568 31 1 0.7942 1.7134 -1.6165 32 1 2.4849 3.9390 -0.6778 33 1 0.7356 3.7769 -0.3913 34 1 0.3307 3.8239 -2.8373 35 1 2.0800 3.9861 -3.1237 36 1 2.0929 6.1115 -1.8473 37 1 0.3436 5.9501 -1.5606 38 1 1.0817 7.8994 -1.4183 39 1 0.8575 10.3505 -1.4460 40 1 0.1774 10.2448 -5.6587 41 1 0.4094 7.7943 -5.6371 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568181183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:43 Heat of formation + Delta-G solvation = -72.696298 kcal Electronic energy + Delta-G solvation = -20910.950874 eV Core-core repulsion = 17512.096922 eV Total energy + Delta-G solvation = -3398.853952 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.02735 -40.26522 -37.59711 -36.53772 -33.69247 -31.85462 -31.48619 -30.32335 -29.15186 -26.71515 -24.82125 -23.31644 -22.67881 -22.01682 -20.95273 -19.51089 -18.46452 -17.54147 -16.78208 -16.47250 -16.20366 -15.70605 -15.03070 -14.92061 -14.71702 -14.38951 -13.94125 -13.85104 -13.56769 -13.25003 -12.91907 -12.78454 -12.48991 -12.25641 -11.85917 -11.63931 -11.42699 -11.17023 -11.01017 -10.86782 -10.80428 -10.66068 -10.42126 -9.98289 -9.71353 -9.63424 -9.46959 -9.11590 -8.36786 -8.31103 -7.28661 -5.99120 -4.03539 0.88115 0.97554 3.00166 3.31887 3.32459 3.36902 3.40290 4.06798 4.41438 4.42926 4.50648 4.84113 4.90520 4.97231 5.04037 5.22458 5.29806 5.31451 5.56621 5.59509 5.69013 5.85088 5.86336 5.88211 5.98653 6.08471 6.12894 6.13712 6.38011 6.43667 6.47503 6.57763 6.81413 7.04379 7.15086 7.21189 7.45431 7.75164 7.88774 8.25645 8.36569 8.71503 9.04118 9.61611 11.06246 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.002755 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.376696 B =10159.604729 C =10897.147888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.686 5.686 14 C 0.072 3.928 15 C -0.114 4.114 16 C 0.059 3.941 17 O -0.310 6.310 18 C 0.129 3.871 19 C -0.183 4.183 20 C -0.111 4.111 21 C 0.051 3.949 22 F -0.144 7.144 23 C -0.114 4.114 24 C -0.128 4.128 25 H 0.042 0.958 26 H 0.035 0.965 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.100 0.900 30 H 0.260 0.740 31 H 0.318 0.682 32 H 0.076 0.924 33 H 0.016 0.984 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.528 15.178 -9.812 19.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.112 3.888 4 H 0.020 0.980 5 C -0.534 4.534 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.318 5.318 14 C -0.058 4.058 15 C -0.152 4.152 16 C -0.016 4.016 17 O -0.224 6.224 18 C 0.083 3.917 19 C -0.201 4.201 20 C -0.130 4.130 21 C 0.031 3.969 22 F -0.123 7.123 23 C -0.132 4.132 24 C -0.147 4.147 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.135 0.865 32 H 0.095 0.905 33 H 0.034 0.966 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.158 0.842 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.869 14.998 -10.007 19.294 hybrid contribution 0.167 0.349 0.976 1.049 sum -6.701 15.346 -9.031 19.026 Atomic orbital electron populations 1.21885 0.99593 0.99793 0.99510 1.21780 0.91229 1.00319 1.03162 1.19163 0.95468 0.89984 0.84200 0.98035 1.21179 0.91207 1.36573 1.04427 0.92091 1.24964 0.98174 0.95598 0.95817 1.69865 1.34851 1.39301 1.09652 0.86600 0.85698 0.78147 0.77164 1.20423 1.21455 1.20270 1.60632 1.36328 1.01485 1.33310 1.21666 1.00380 0.90720 0.93070 1.21556 1.03280 0.90253 1.00116 1.22956 1.00731 0.94652 0.83267 1.86108 1.85526 1.16373 1.34351 1.19096 0.95339 0.83368 0.93887 1.21231 1.06390 0.94139 0.98369 1.20958 1.00197 0.94472 0.97350 1.17570 1.07147 0.77242 0.94919 1.91483 1.93926 1.29545 1.97341 1.20938 1.01098 0.93669 0.97529 1.20311 1.04188 0.93056 0.97122 0.93928 0.94585 0.94322 0.93968 0.88208 0.93002 0.86516 0.90538 0.96605 0.91525 0.90066 0.91530 0.91997 0.84178 0.84509 0.84192 0.84111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.63 37.16 0.36 -2.48 16 2 C -0.13 -2.92 5.36 -26.73 -0.14 -3.06 16 3 C 0.22 5.31 2.03 -68.86 -0.14 5.17 16 4 H 0.00 0.05 7.84 -51.93 -0.41 -0.35 16 5 C -0.50 -13.41 8.60 -34.44 -0.30 -13.71 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.17 11.29 55.43 0.63 -24.55 16 9 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.69 -14.00 6.27 -107.95 -0.68 -14.67 16 14 C 0.07 1.25 5.45 -3.83 -0.02 1.23 16 15 C -0.11 -1.60 5.88 -26.73 -0.16 -1.75 16 16 C 0.06 0.71 4.74 37.16 0.18 0.89 16 17 O -0.31 -3.91 10.14 -19.57 -0.20 -4.11 16 18 C 0.13 1.47 6.69 -39.24 -0.26 1.20 16 19 C -0.18 -1.88 9.04 -39.44 -0.36 -2.24 16 20 C -0.11 -1.08 10.02 -39.53 -0.40 -1.48 16 21 C 0.05 0.52 7.30 -39.43 -0.29 0.23 16 22 F -0.14 -1.56 17.27 2.25 0.04 -1.52 16 23 C -0.11 -1.04 10.02 -39.54 -0.40 -1.43 16 24 C -0.13 -1.26 9.99 -39.44 -0.39 -1.65 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.60 6.66 -51.93 -0.35 0.26 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.32 5.89 6.62 -39.29 -0.26 5.63 16 32 H 0.08 1.45 7.97 -51.93 -0.41 1.04 16 33 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 0.76 7.67 -51.93 -0.40 0.36 16 37 H 0.06 0.67 7.65 -51.93 -0.40 0.27 16 38 H 0.14 1.28 6.30 -52.49 -0.33 0.95 16 39 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 341.64 15.07 5.15 5.15 Total: -1.00 -28.55 341.64 -8.70 -37.26 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.21 Total: 3.93 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -2.41 Total: -17.68 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: -0.05 Total: -39.22 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.20 Total: -4.11 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.55 -8.70 -37.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.441 kcal (2) G-P(sol) polarization free energy of solvation -28.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds