Wall clock time and date at job start Tue Mar 31 2020 05:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47166 * 2 1 4 4 H 1.08998 * 109.46910 * 185.16210 * 3 2 1 5 5 C 1.50701 * 109.46892 * 305.15944 * 3 2 1 6 6 H 1.08000 * 119.99669 * 120.00651 * 5 3 2 7 7 C 1.37868 * 120.00123 * 300.00071 * 5 3 2 8 8 N 1.31513 * 120.00372 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00171 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47113 * 89.99744 * 9 7 5 11 11 H 1.48490 * 109.47338 * 209.99915 * 9 7 5 12 12 H 1.48504 * 109.46743 * 330.00344 * 9 7 5 13 13 N 1.46906 * 109.47206 * 65.16103 * 3 2 1 14 14 C 1.46899 * 110.99604 * 85.91432 * 13 3 2 15 15 C 1.53000 * 109.46630 * 174.67736 * 14 13 3 16 16 H 1.09006 * 109.47122 * 305.00479 * 15 14 13 17 17 O 1.42897 * 109.47280 * 65.00139 * 15 14 13 18 18 C 1.53003 * 109.47429 * 185.00333 * 15 14 13 19 19 C 1.50700 * 109.47307 * 174.99943 * 18 15 14 20 20 C 1.38235 * 119.97452 * 269.72344 * 19 18 15 21 21 C 1.38196 * 120.02705 * 179.72827 * 20 19 18 22 22 C 1.38462 * 119.97093 * 0.57040 * 21 20 19 23 23 F 1.35098 * 120.02490 * 179.68287 * 22 21 20 24 24 C 1.38457 * 119.94915 * 359.70363 * 22 21 20 25 25 C 1.38198 * 119.97612 * 359.97438 * 24 22 21 26 26 H 1.08996 * 109.47410 * 174.85013 * 1 2 3 27 27 H 1.08994 * 109.46953 * 54.84943 * 1 2 3 28 28 H 1.09000 * 109.47148 * 294.85409 * 1 2 3 29 29 H 1.09001 * 109.46915 * 119.99843 * 2 1 3 30 30 H 1.08994 * 109.46966 * 239.99524 * 2 1 3 31 31 H 0.97003 * 120.00508 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99742 * 321.96289 * 13 3 2 33 33 H 1.08995 * 109.47219 * 294.67437 * 14 13 3 34 34 H 1.08999 * 109.47280 * 54.68113 * 14 13 3 35 35 H 0.96703 * 114.00320 * 59.99934 * 17 15 14 36 36 H 1.09005 * 109.46790 * 295.00086 * 18 15 14 37 37 H 1.08996 * 109.47099 * 54.99426 * 18 15 14 38 38 H 1.08002 * 119.98747 * 359.97438 * 20 19 18 39 39 H 1.08000 * 120.01688 * 180.25765 * 21 20 19 40 40 H 1.07998 * 120.01316 * 179.97438 * 24 22 21 41 41 H 1.07992 * 119.99385 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4438 -0.0925 5 6 1.4361 2.1888 -1.1616 6 1 0.8270 3.0628 -0.9839 7 6 1.6611 1.7559 -2.4511 8 7 2.4025 0.6914 -2.6675 9 14 0.9131 2.6814 -3.8910 10 1 1.8552 3.7356 -4.3451 11 1 0.6536 1.7358 -5.0061 12 1 -0.3643 3.3086 -3.4664 13 7 1.6547 2.0981 1.2569 14 6 2.6435 1.8369 2.3115 15 6 2.2799 2.6404 3.5617 16 1 2.1895 3.6953 3.3021 17 8 1.0360 2.1704 4.0849 18 6 3.3750 2.4667 4.6160 19 6 3.0792 3.3532 5.7983 20 6 3.5765 4.6425 5.8362 21 6 3.3013 5.4583 6.9172 22 6 2.5370 4.9799 7.9680 23 9 2.2727 5.7743 9.0282 24 6 2.0442 3.6865 7.9315 25 6 2.3152 2.8747 6.8464 26 1 -0.3634 -1.0235 -0.0922 27 1 -0.3633 0.5916 -0.8402 28 1 -0.3633 0.4319 0.9325 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 2.5612 0.3870 -3.5747 32 1 0.7322 1.8102 1.5469 33 1 2.6468 0.7737 2.5511 34 1 3.6328 2.1341 1.9636 35 1 1.0431 1.2370 4.3377 36 1 3.4052 1.4265 4.9404 37 1 4.3387 2.7418 4.1876 38 1 4.1770 5.0137 5.0189 39 1 3.6864 6.4669 6.9448 40 1 1.4483 3.3121 8.7507 41 1 1.9313 1.8657 6.8178 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569738841.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:49 Heat of formation + Delta-G solvation = -86.689343 kcal Electronic energy + Delta-G solvation = -21566.458208 eV Core-core repulsion = 18166.997472 eV Total energy + Delta-G solvation = -3399.460736 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.01972 -39.53492 -37.69576 -35.89374 -32.81309 -32.33971 -31.28007 -30.70531 -28.56146 -26.45502 -24.51533 -23.20803 -23.17656 -21.71286 -21.10134 -19.29533 -17.80907 -16.68281 -16.60213 -15.97082 -15.73440 -15.60803 -15.25870 -14.85561 -14.37451 -14.13073 -13.97802 -13.70363 -13.42896 -13.14662 -12.80515 -12.45460 -12.20777 -12.03842 -11.90536 -11.67223 -11.39852 -11.11042 -10.93465 -10.81390 -10.69646 -10.51354 -10.13654 -9.95751 -9.65157 -9.54994 -9.25112 -8.98293 -8.57867 -8.34267 -7.20408 -5.97703 -3.99022 1.00054 1.09181 3.32968 3.39550 3.42627 3.44119 4.12279 4.39384 4.47804 4.53703 4.69278 4.73494 4.95633 5.07831 5.14060 5.34057 5.34224 5.49891 5.59249 5.68241 5.76624 5.84018 5.96490 5.97094 6.09204 6.17155 6.30804 6.34878 6.37745 6.48727 6.57077 6.75132 6.88620 7.26897 7.28241 7.52102 7.69512 7.81235 7.89649 8.28595 8.57588 8.63520 9.07247 9.64866 11.09349 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031436 B = 0.003039 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.485175 B = 9211.650548 C = 9559.424030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.144 4.144 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.488 4.488 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.681 5.681 14 C 0.031 3.969 15 C 0.115 3.885 16 H 0.106 0.894 17 O -0.555 6.555 18 C -0.115 4.115 19 C -0.077 4.077 20 C -0.089 4.089 21 C -0.152 4.152 22 C 0.086 3.914 23 F -0.145 7.145 24 C -0.153 4.153 25 C -0.077 4.077 26 H 0.022 0.978 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.008 0.992 30 H 0.092 0.908 31 H 0.259 0.741 32 H 0.333 0.667 33 H 0.018 0.982 34 H 0.072 0.928 35 H 0.365 0.635 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.367 2.583 18.596 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.184 4.184 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.312 5.312 14 C -0.100 4.100 15 C 0.056 3.944 16 H 0.124 0.876 17 O -0.359 6.359 18 C -0.153 4.153 19 C -0.077 4.077 20 C -0.108 4.108 21 C -0.171 4.171 22 C 0.067 3.933 23 F -0.123 7.123 24 C -0.172 4.172 25 C -0.095 4.095 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.027 0.973 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.152 0.848 33 H 0.036 0.964 34 H 0.090 0.910 35 H 0.211 0.789 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.522 3.743 18.182 18.734 hybrid contribution -0.330 -0.970 -0.353 1.084 sum 2.191 2.773 17.829 18.176 Atomic orbital electron populations 1.21598 0.97616 0.98630 1.00925 1.22097 0.95084 1.01144 1.00067 1.19224 0.95773 0.88587 0.85696 0.95187 1.21084 1.30440 1.11462 0.89679 0.92005 1.24914 0.95581 0.95161 0.98750 1.69879 1.39187 1.24006 1.20661 0.86572 0.79661 0.79527 0.82102 1.20824 1.21483 1.19895 1.60729 1.04079 1.63156 1.03259 1.22572 0.98228 0.96290 0.92914 1.22066 0.82280 1.00128 0.89963 0.87632 1.86636 1.34427 1.30079 1.84767 1.21394 1.00773 0.99048 0.94107 1.19865 0.97332 0.94835 0.95691 1.20964 0.99203 0.93094 0.97491 1.21115 1.00720 1.01247 0.94034 1.17720 1.00485 0.89523 0.85577 1.91481 1.92553 1.73542 1.54770 1.21115 1.02622 0.92899 1.00566 1.20869 0.96596 0.99862 0.92190 0.95837 0.91234 0.95245 0.97303 0.88988 0.93149 0.84807 0.96355 0.90997 0.78882 0.90580 0.89617 0.84899 0.84915 0.85004 0.85197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.40 37.16 0.35 -2.41 16 2 C -0.14 -3.31 5.51 -26.73 -0.15 -3.46 16 3 C 0.21 5.19 2.33 -68.86 -0.16 5.03 16 4 H 0.03 0.80 7.70 -51.93 -0.40 0.40 16 5 C -0.49 -13.10 7.25 -34.44 -0.25 -13.35 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.53 5.28 -17.82 -0.09 1.43 16 8 N -0.90 -25.10 11.38 55.43 0.63 -24.47 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.68 -13.93 6.21 -107.95 -0.67 -14.60 16 14 C 0.03 0.49 5.18 -3.82 -0.02 0.47 16 15 C 0.11 1.51 3.20 -26.73 -0.09 1.43 16 16 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 17 O -0.56 -7.37 12.45 -35.23 -0.44 -7.81 16 18 C -0.12 -1.16 5.03 -27.88 -0.14 -1.30 16 19 C -0.08 -0.80 4.97 -104.62 -0.52 -1.32 16 20 C -0.09 -0.91 9.70 -39.60 -0.38 -1.30 16 21 C -0.15 -1.57 10.03 -39.51 -0.40 -1.96 16 22 C 0.09 0.96 7.30 -39.42 -0.29 0.67 16 23 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 24 C -0.15 -1.56 10.03 -39.52 -0.40 -1.95 16 25 C -0.08 -0.77 9.40 -39.59 -0.37 -1.14 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 1.63 6.85 -51.93 -0.36 1.27 16 28 H 0.03 0.56 6.63 -51.93 -0.34 0.22 16 29 H 0.01 0.18 7.50 -51.93 -0.39 -0.21 16 30 H 0.09 2.39 6.22 -51.93 -0.32 2.06 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.33 6.73 6.33 -39.29 -0.25 6.48 16 33 H 0.02 0.29 7.54 -51.93 -0.39 -0.10 16 34 H 0.07 1.19 7.92 -51.93 -0.41 0.78 16 35 H 0.37 3.62 9.05 45.56 0.41 4.04 16 36 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 37 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 38 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 339.31 15.07 5.11 5.11 Total: -1.00 -29.16 339.31 -8.62 -37.78 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.37 Total: 8.56 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -2.90 Total: -19.16 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: -0.04 Total: -39.07 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.44 Total: -7.81 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.16 -8.62 -37.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569738841.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.909 kcal (2) G-P(sol) polarization free energy of solvation -29.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds