Wall clock time and date at job start Tue Mar 31 2020 05:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47166 * 2 1 4 4 H 1.08998 * 109.46910 * 185.16210 * 3 2 1 5 5 C 1.50701 * 109.46892 * 305.15944 * 3 2 1 6 6 H 1.08000 * 119.99669 * 120.00651 * 5 3 2 7 7 C 1.37868 * 120.00123 * 300.00071 * 5 3 2 8 8 N 1.31513 * 120.00372 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00171 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47113 * 89.99744 * 9 7 5 11 11 H 1.48490 * 109.47338 * 209.99915 * 9 7 5 12 12 H 1.48504 * 109.46743 * 330.00344 * 9 7 5 13 13 N 1.46906 * 109.47206 * 65.16103 * 3 2 1 14 14 C 1.46899 * 110.99604 * 85.91432 * 13 3 2 15 15 C 1.53000 * 109.46630 * 174.67736 * 14 13 3 16 16 H 1.09006 * 109.47122 * 305.00479 * 15 14 13 17 17 O 1.42897 * 109.47280 * 65.00139 * 15 14 13 18 18 C 1.53003 * 109.47429 * 185.00333 * 15 14 13 19 19 C 1.50700 * 109.47307 * 174.99943 * 18 15 14 20 20 C 1.38235 * 119.97452 * 269.72344 * 19 18 15 21 21 C 1.38196 * 120.02705 * 179.72827 * 20 19 18 22 22 C 1.38462 * 119.97093 * 0.57040 * 21 20 19 23 23 F 1.35098 * 120.02490 * 179.68287 * 22 21 20 24 24 C 1.38457 * 119.94915 * 359.70363 * 22 21 20 25 25 C 1.38198 * 119.97612 * 359.97438 * 24 22 21 26 26 H 1.08996 * 109.47410 * 174.85013 * 1 2 3 27 27 H 1.08994 * 109.46953 * 54.84943 * 1 2 3 28 28 H 1.09000 * 109.47148 * 294.85409 * 1 2 3 29 29 H 1.09001 * 109.46915 * 119.99843 * 2 1 3 30 30 H 1.08994 * 109.46966 * 239.99524 * 2 1 3 31 31 H 0.97003 * 120.00508 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99742 * 321.96289 * 13 3 2 33 33 H 1.08995 * 109.47219 * 294.67437 * 14 13 3 34 34 H 1.08999 * 109.47280 * 54.68113 * 14 13 3 35 35 H 0.96703 * 114.00320 * 59.99934 * 17 15 14 36 36 H 1.09005 * 109.46790 * 295.00086 * 18 15 14 37 37 H 1.08996 * 109.47099 * 54.99426 * 18 15 14 38 38 H 1.08002 * 119.98747 * 359.97438 * 20 19 18 39 39 H 1.08000 * 120.01688 * 180.25765 * 21 20 19 40 40 H 1.07998 * 120.01316 * 179.97438 * 24 22 21 41 41 H 1.07992 * 119.99385 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4438 -0.0925 5 6 1.4361 2.1888 -1.1616 6 1 0.8270 3.0628 -0.9839 7 6 1.6611 1.7559 -2.4511 8 7 2.4025 0.6914 -2.6675 9 14 0.9131 2.6814 -3.8910 10 1 1.8552 3.7356 -4.3451 11 1 0.6536 1.7358 -5.0061 12 1 -0.3643 3.3086 -3.4664 13 7 1.6547 2.0981 1.2569 14 6 2.6435 1.8369 2.3115 15 6 2.2799 2.6404 3.5617 16 1 2.1895 3.6953 3.3021 17 8 1.0360 2.1704 4.0849 18 6 3.3750 2.4667 4.6160 19 6 3.0792 3.3532 5.7983 20 6 3.5765 4.6425 5.8362 21 6 3.3013 5.4583 6.9172 22 6 2.5370 4.9799 7.9680 23 9 2.2727 5.7743 9.0282 24 6 2.0442 3.6865 7.9315 25 6 2.3152 2.8747 6.8464 26 1 -0.3634 -1.0235 -0.0922 27 1 -0.3633 0.5916 -0.8402 28 1 -0.3633 0.4319 0.9325 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 2.5612 0.3870 -3.5747 32 1 0.7322 1.8102 1.5469 33 1 2.6468 0.7737 2.5511 34 1 3.6328 2.1341 1.9636 35 1 1.0431 1.2370 4.3377 36 1 3.4052 1.4265 4.9404 37 1 4.3387 2.7418 4.1876 38 1 4.1770 5.0137 5.0189 39 1 3.6864 6.4669 6.9448 40 1 1.4483 3.3121 8.7507 41 1 1.9313 1.8657 6.8178 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569738841.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:49 Heat of formation + Delta-G solvation = -105.124756 kcal Electronic energy + Delta-G solvation = -21567.257628 eV Core-core repulsion = 18166.997472 eV Total energy + Delta-G solvation = -3400.260155 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.86954 -40.36445 -38.91255 -37.44262 -34.33219 -33.55909 -32.35679 -32.02315 -29.78094 -28.14980 -25.91422 -24.91787 -23.95685 -22.80324 -22.01571 -21.13439 -18.61075 -18.27809 -17.46377 -17.38764 -16.77375 -16.73515 -16.56356 -16.12810 -15.68042 -15.47619 -14.97695 -14.77325 -14.43473 -14.38769 -14.28068 -14.17760 -13.62866 -13.13963 -13.09807 -12.81729 -12.70689 -12.54179 -12.49624 -12.41539 -11.95243 -11.84104 -11.73703 -11.65825 -11.40794 -11.11499 -10.73071 -10.41235 -10.00311 -9.42333 -8.84616 -8.04357 -6.12233 0.19960 0.34136 1.43058 1.44921 1.54486 2.46560 2.64449 3.24409 3.34076 3.44649 3.71753 3.83902 3.89081 4.02527 4.23640 4.32438 4.41219 4.42555 4.44928 4.58772 4.61378 4.71503 4.74792 4.89314 4.94962 5.03309 5.12522 5.16849 5.21145 5.26171 5.33220 5.41921 5.46114 5.65883 5.72668 5.77085 5.87329 5.99313 6.35607 6.73472 6.90783 6.97420 7.03644 7.55892 9.00686 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031436 B = 0.003039 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.485175 B = 9211.650548 C = 9559.424030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.137 4.137 3 C 0.221 3.779 4 H -0.002 1.002 5 C -0.500 4.500 6 H 0.049 0.951 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.948 3.052 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.271 1.271 13 N -0.689 5.689 14 C 0.031 3.969 15 C 0.130 3.870 16 H 0.086 0.914 17 O -0.567 6.567 18 C -0.104 4.104 19 C -0.086 4.086 20 C -0.098 4.098 21 C -0.159 4.159 22 C 0.066 3.934 23 F -0.152 7.152 24 C -0.158 4.158 25 C -0.080 4.080 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.028 0.972 30 H 0.059 0.941 31 H 0.258 0.742 32 H 0.336 0.664 33 H 0.030 0.970 34 H 0.064 0.936 35 H 0.382 0.618 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.937 2.235 19.621 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.177 4.177 3 C 0.112 3.888 4 H 0.016 0.984 5 C -0.539 4.539 6 H 0.067 0.933 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.775 3.225 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.195 1.195 13 N -0.320 5.320 14 C -0.099 4.099 15 C 0.071 3.929 16 H 0.104 0.896 17 O -0.373 6.373 18 C -0.142 4.142 19 C -0.086 4.086 20 C -0.116 4.116 21 C -0.178 4.178 22 C 0.047 3.953 23 F -0.131 7.131 24 C -0.177 4.177 25 C -0.098 4.098 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.155 0.845 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.230 0.770 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.163 0.837 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.090 3.392 19.229 19.637 hybrid contribution -0.186 -0.864 -0.619 1.079 sum 1.904 2.528 18.609 18.876 Atomic orbital electron populations 1.21478 0.96100 0.99495 1.00798 1.21937 0.96351 0.99992 0.99397 1.18963 0.93502 0.89421 0.86876 0.98434 1.21320 1.30268 1.11280 0.91055 0.93269 1.25561 0.96003 0.95885 1.00953 1.70000 1.40090 1.25030 1.20983 0.85703 0.78976 0.78441 0.79392 1.20594 1.21125 1.19538 1.60588 1.05135 1.63000 1.03309 1.22655 0.96731 0.97565 0.92915 1.21769 0.83354 0.98306 0.89497 0.89636 1.86605 1.34460 1.31645 1.84632 1.21270 0.99704 1.00247 0.92982 1.19978 0.97671 0.94977 0.95975 1.21194 0.99365 0.93217 0.97803 1.21321 1.00584 1.02007 0.93888 1.18002 1.01357 0.90110 0.85788 1.91458 1.92708 1.73820 1.55141 1.21360 1.02546 0.92577 1.01218 1.21133 0.96145 1.00737 0.91757 0.93948 0.93929 0.93214 0.95305 0.92201 0.93238 0.84533 0.95184 0.91783 0.76987 0.88640 0.88911 0.83721 0.83679 0.83463 0.83212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.40 71.98 0.68 -4.29 16 2 C -0.14 -6.21 5.51 30.60 0.17 -6.04 16 3 C 0.22 10.73 2.33 44.17 0.10 10.84 16 4 H 0.00 -0.12 7.70 -2.39 -0.02 -0.14 16 5 C -0.50 -27.14 7.25 25.60 0.19 -26.96 16 6 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 7 C 0.01 0.77 5.28 84.65 0.45 1.21 16 8 N -0.92 -52.11 11.38 21.44 0.24 -51.87 16 9 Si 0.95 43.76 29.54 68.60 2.03 45.78 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 13 N -0.69 -27.73 6.21 -495.45 -3.08 -30.81 16 14 C 0.03 0.97 5.18 86.30 0.45 1.42 16 15 C 0.13 3.18 3.20 30.60 0.10 3.28 16 16 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 17 O -0.57 -13.63 12.45 -148.98 -1.85 -15.48 16 18 C -0.10 -1.84 5.03 29.85 0.15 -1.69 16 19 C -0.09 -1.61 4.97 -19.86 -0.10 -1.71 16 20 C -0.10 -1.85 9.70 22.26 0.22 -1.63 16 21 C -0.16 -3.11 10.03 22.31 0.22 -2.88 16 22 C 0.07 1.41 7.30 22.38 0.16 1.57 16 23 F -0.15 -3.47 17.27 44.97 0.78 -2.70 16 24 C -0.16 -2.94 10.03 22.31 0.22 -2.72 16 25 C -0.08 -1.39 9.40 22.26 0.21 -1.19 16 26 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.04 1.96 6.85 -2.39 -0.02 1.94 16 28 H 0.05 1.80 6.63 -2.39 -0.02 1.79 16 29 H 0.03 1.16 7.50 -2.39 -0.02 1.14 16 30 H 0.06 3.12 6.22 -2.39 -0.01 3.11 16 31 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.34 13.09 6.33 -89.69 -0.57 12.53 16 33 H 0.03 0.87 7.54 -2.39 -0.02 0.85 16 34 H 0.06 2.08 7.92 -2.39 -0.02 2.06 16 35 H 0.38 6.31 9.05 -74.05 -0.67 5.64 16 36 H 0.10 1.34 8.09 -2.38 -0.02 1.32 16 37 H 0.09 1.53 8.08 -2.39 -0.02 1.51 16 38 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 40 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -62.49 339.31 1.13 -61.36 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -0.20 Total: 24.51 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: 3.21 Total: -30.79 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -2.83 Total: -82.68 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -1.85 Total: -15.48 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.70 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -62.49 1.13 -61.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569738841.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.768 kcal (2) G-P(sol) polarization free energy of solvation -62.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds