Wall clock time and date at job start Tue Mar 31 2020 05:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47377 * 2 1 4 4 H 1.09003 * 109.46984 * 177.96053 * 3 2 1 5 5 C 1.50700 * 109.47105 * 57.96104 * 3 2 1 6 6 H 1.08004 * 119.99510 * 240.00549 * 5 3 2 7 7 C 1.37873 * 120.00095 * 59.99757 * 5 3 2 8 8 N 1.31515 * 120.00339 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99683 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47119 * 60.00092 * 9 7 5 11 11 H 1.48502 * 109.46896 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47085 * 300.00049 * 9 7 5 13 13 N 1.46896 * 109.47065 * 297.95498 * 3 2 1 14 14 C 1.46896 * 111.00512 * 273.77971 * 13 3 2 15 15 C 1.52994 * 109.47508 * 174.61367 * 14 13 3 16 16 H 1.09000 * 109.46934 * 304.99962 * 15 14 13 17 17 O 1.42906 * 109.47118 * 64.99784 * 15 14 13 18 18 C 1.53004 * 109.47375 * 184.99782 * 15 14 13 19 19 C 1.50696 * 109.47138 * 175.00019 * 18 15 14 20 20 C 1.38246 * 119.97513 * 269.72707 * 19 18 15 21 21 C 1.38200 * 120.02863 * 179.72786 * 20 19 18 22 22 C 1.38460 * 119.96847 * 0.56544 * 21 20 19 23 23 F 1.35105 * 120.02057 * 179.68267 * 22 21 20 24 24 C 1.38452 * 119.95316 * 359.70841 * 22 21 20 25 25 C 1.38205 * 119.97370 * 359.97438 * 24 22 21 26 26 H 1.08998 * 109.47314 * 174.45084 * 1 2 3 27 27 H 1.09007 * 109.46997 * 54.45297 * 1 2 3 28 28 H 1.09002 * 109.47303 * 294.45610 * 1 2 3 29 29 H 1.08995 * 109.47146 * 120.00371 * 2 1 3 30 30 H 1.09004 * 109.47074 * 239.99587 * 2 1 3 31 31 H 0.96994 * 120.00166 * 179.97438 * 8 7 5 32 32 H 1.00902 * 110.99619 * 149.82343 * 13 3 2 33 33 H 1.09006 * 109.46730 * 294.61177 * 14 13 3 34 34 H 1.08996 * 109.47238 * 54.60640 * 14 13 3 35 35 H 0.96704 * 114.00115 * 60.00068 * 17 15 14 36 36 H 1.09001 * 109.47168 * 295.00022 * 18 15 14 37 37 H 1.09000 * 109.46692 * 55.00335 * 18 15 14 38 38 H 1.08002 * 119.98418 * 359.97438 * 20 19 18 39 39 H 1.08002 * 120.01284 * 180.25555 * 21 20 19 40 40 H 1.08005 * 120.01336 * 179.97438 * 24 22 21 41 41 H 1.07999 * 119.98460 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4426 0.0366 5 6 1.4968 2.1673 1.2044 6 1 0.8797 3.0441 1.0740 7 6 1.7876 1.7112 2.4726 8 7 2.5385 0.6432 2.6313 9 14 1.1136 2.6094 3.9655 10 1 -0.3705 2.6086 3.9154 11 1 1.5670 1.9236 5.2021 12 1 1.6081 4.0096 3.9656 13 7 1.5911 2.1205 -1.2234 14 6 2.5281 1.8850 -2.3299 15 6 1.9619 2.4912 -3.6155 16 1 0.9647 2.0906 -3.7976 17 8 1.8869 3.9118 -3.4794 18 6 2.8756 2.1390 -4.7911 19 6 2.2557 2.6302 -6.0738 20 6 1.4090 1.8062 -6.7917 21 6 0.8355 2.2576 -7.9652 22 6 1.1185 3.5315 -8.4281 23 9 0.5635 3.9714 -9.5786 24 6 1.9711 4.3538 -7.7113 25 6 2.5383 3.9026 -6.5345 26 1 -0.3634 -1.0228 -0.0994 27 1 -0.3633 0.5975 -0.8362 28 1 -0.3634 0.4254 0.9355 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 2.7433 0.3226 3.5235 32 1 1.4622 3.1083 -1.0627 33 1 3.4864 2.3508 -2.0999 34 1 2.6685 0.8126 -2.4651 35 1 2.7399 4.3368 -3.3151 36 1 3.8467 2.6141 -4.6516 37 1 3.0038 1.0577 -4.8403 38 1 1.1925 0.8107 -6.4331 39 1 0.1709 1.6151 -8.5237 40 1 2.1929 5.3475 -8.0716 41 1 3.2030 4.5441 -5.9751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569738843.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:51 Heat of formation + Delta-G solvation = -105.959071 kcal Electronic energy + Delta-G solvation = -21561.857746 eV Core-core repulsion = 18161.561412 eV Total energy + Delta-G solvation = -3400.296334 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.86661 -40.35595 -38.81979 -37.33210 -34.33676 -33.53718 -32.45617 -32.02210 -29.93153 -28.07740 -25.86490 -24.88297 -23.95505 -22.81157 -22.00992 -20.86839 -18.60916 -18.46881 -17.47079 -17.30389 -16.95879 -16.59911 -16.55677 -16.10005 -15.63542 -15.31118 -15.05301 -14.85891 -14.66185 -14.42253 -14.26820 -13.88700 -13.60863 -13.08260 -13.05029 -12.81248 -12.72782 -12.53240 -12.50822 -12.37511 -11.97146 -11.84607 -11.81606 -11.60859 -11.31882 -10.87710 -10.72911 -10.51016 -10.00136 -9.42153 -8.92336 -8.08534 -6.20224 0.20101 0.34265 1.42916 1.44441 1.51348 2.43431 2.64531 3.20171 3.34211 3.44513 3.71455 3.83938 3.88783 4.02545 4.24445 4.32735 4.41394 4.42974 4.45346 4.65206 4.69795 4.82486 4.86820 4.94009 4.97808 5.03753 5.16538 5.21283 5.26212 5.32763 5.33564 5.43589 5.59095 5.66051 5.73209 5.84500 5.93137 5.99453 6.30766 6.54028 6.84743 6.95636 7.08430 7.48744 8.96163 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035136 B = 0.003002 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.715101 B = 9325.829179 C = 9565.923297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.098 4.098 3 C 0.223 3.777 4 H -0.035 1.035 5 C -0.525 4.525 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.951 3.049 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.681 5.681 14 C 0.032 3.968 15 C 0.131 3.869 16 H 0.090 0.910 17 O -0.568 6.568 18 C -0.105 4.105 19 C -0.086 4.086 20 C -0.096 4.096 21 C -0.159 4.159 22 C 0.066 3.934 23 F -0.153 7.153 24 C -0.159 4.159 25 C -0.081 4.081 26 H 0.034 0.966 27 H 0.053 0.947 28 H 0.027 0.973 29 H 0.055 0.945 30 H 0.024 0.976 31 H 0.260 0.740 32 H 0.334 0.666 33 H 0.023 0.977 34 H 0.069 0.931 35 H 0.381 0.619 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.430 3.584 -19.252 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.137 4.137 3 C 0.114 3.886 4 H -0.018 1.018 5 C -0.564 4.564 6 H 0.072 0.928 7 C -0.181 4.181 8 N -0.556 5.556 9 Si 0.777 3.223 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.311 5.311 14 C -0.098 4.098 15 C 0.072 3.928 16 H 0.107 0.893 17 O -0.375 6.375 18 C -0.143 4.143 19 C -0.086 4.086 20 C -0.114 4.114 21 C -0.177 4.177 22 C 0.047 3.953 23 F -0.131 7.131 24 C -0.178 4.178 25 C -0.099 4.099 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.151 0.849 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.230 0.770 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.433 2.858 -19.436 19.650 hybrid contribution 0.980 0.942 1.168 1.792 sum 1.413 3.800 -18.269 18.713 Atomic orbital electron populations 1.21300 0.96222 0.98414 1.00519 1.21306 0.96129 0.97762 0.98455 1.18891 0.90928 0.92229 0.86540 1.01775 1.21453 1.31413 1.11978 0.91545 0.92759 1.25588 0.95378 0.95698 1.01428 1.70002 1.38447 1.24245 1.22871 0.85720 0.78863 0.78811 0.78895 1.19887 1.21165 1.19730 1.60503 1.47912 1.16274 1.06450 1.22667 0.93606 1.00901 0.92647 1.21775 0.99452 0.80689 0.90907 0.89254 1.86601 1.36685 1.19571 1.94595 1.21273 0.99058 1.03221 0.90700 1.19973 0.97783 0.94519 0.96311 1.21201 0.95715 1.00868 0.93655 1.21328 1.02813 0.94934 0.98649 1.18002 0.98076 0.94852 0.84326 1.91460 1.84151 1.89945 1.47578 1.21353 0.98731 1.01026 0.96654 1.21128 0.98958 0.95332 0.94478 0.94660 0.92792 0.95332 0.92655 0.95735 0.93044 0.84877 0.95931 0.91307 0.77043 0.88933 0.88726 0.83519 0.83575 0.83567 0.83417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.71 9.46 71.98 0.68 -4.03 16 2 C -0.10 -4.65 5.57 30.59 0.17 -4.48 16 3 C 0.22 10.87 2.30 44.17 0.10 10.97 16 4 H -0.04 -1.92 7.84 -2.39 -0.02 -1.94 16 5 C -0.53 -28.07 7.33 25.60 0.19 -27.88 16 6 H 0.05 2.89 7.60 -2.91 -0.02 2.86 16 7 C 0.02 0.99 5.30 84.65 0.45 1.44 16 8 N -0.92 -51.93 11.34 21.45 0.24 -51.68 16 9 Si 0.95 43.13 29.54 68.60 2.03 45.16 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 N -0.68 -27.18 5.51 -495.47 -2.73 -29.91 16 14 C 0.03 0.99 5.12 86.30 0.44 1.43 16 15 C 0.13 3.17 3.20 30.59 0.10 3.27 16 16 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 17 O -0.57 -14.02 12.45 -148.98 -1.85 -15.88 16 18 C -0.10 -1.84 5.03 29.85 0.15 -1.69 16 19 C -0.09 -1.59 4.97 -19.86 -0.10 -1.69 16 20 C -0.10 -1.77 9.70 22.26 0.22 -1.55 16 21 C -0.16 -3.02 10.03 22.31 0.22 -2.80 16 22 C 0.07 1.40 7.30 22.37 0.16 1.56 16 23 F -0.15 -3.46 17.27 44.97 0.78 -2.68 16 24 C -0.16 -2.98 10.03 22.31 0.22 -2.76 16 25 C -0.08 -1.44 9.40 22.26 0.21 -1.23 16 26 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 2.27 7.50 -2.38 -0.02 2.25 16 28 H 0.03 1.35 7.37 -2.39 -0.02 1.34 16 29 H 0.05 2.97 6.12 -2.39 -0.01 2.96 16 30 H 0.02 1.05 7.43 -2.38 -0.02 1.04 16 31 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 32 H 0.33 13.60 7.89 -89.69 -0.71 12.89 16 33 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.07 2.16 7.39 -2.39 -0.02 2.14 16 35 H 0.38 6.79 9.05 -74.05 -0.67 6.12 16 36 H 0.09 1.35 8.09 -2.39 -0.02 1.34 16 37 H 0.09 1.51 8.08 -2.39 -0.02 1.49 16 38 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -61.77 341.48 1.34 -60.43 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -0.34 Total: 23.99 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 3.22 Total: -29.43 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -2.49 Total: -81.59 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -1.85 Total: -15.88 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -61.77 1.34 -60.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569738843.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.525 kcal (2) G-P(sol) polarization free energy of solvation -61.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds