Wall clock time and date at job start Tue Mar 31 2020 05:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47577 * 2 1 4 4 H 1.09001 * 109.47056 * 55.12942 * 3 2 1 5 5 C 1.50697 * 109.47402 * 175.13608 * 3 2 1 6 6 H 1.08002 * 119.99718 * 119.99894 * 5 3 2 7 7 C 1.37872 * 119.99839 * 299.99992 * 5 3 2 8 8 N 1.31507 * 120.00312 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99976 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47290 * 89.99395 * 9 7 5 11 11 H 1.48499 * 109.47111 * 209.99753 * 9 7 5 12 12 H 1.48510 * 109.46864 * 329.99572 * 9 7 5 13 13 N 1.46901 * 109.46994 * 295.13714 * 3 2 1 14 14 C 1.46897 * 111.00296 * 154.14530 * 13 3 2 15 15 C 1.53005 * 109.47412 * 184.77827 * 14 13 3 16 16 H 1.08994 * 109.46827 * 59.99427 * 15 14 13 17 17 O 1.42900 * 109.46442 * 300.00029 * 15 14 13 18 18 C 1.52991 * 109.47025 * 179.97438 * 15 14 13 19 19 C 1.50704 * 109.46820 * 184.99572 * 18 15 14 20 20 C 1.38247 * 119.97189 * 90.00118 * 19 18 15 21 21 C 1.38196 * 120.02625 * 179.97438 * 20 19 18 22 22 C 1.38464 * 119.97423 * 359.97438 * 21 20 19 23 23 F 1.35102 * 120.02786 * 179.97438 * 22 21 20 24 24 C 1.38460 * 119.94636 * 0.25232 * 22 21 20 25 25 C 1.38198 * 119.97472 * 359.51547 * 24 22 21 26 26 H 1.09006 * 109.47065 * 305.11466 * 1 2 3 27 27 H 1.08998 * 109.47208 * 65.11083 * 1 2 3 28 28 H 1.09000 * 109.47501 * 185.11331 * 1 2 3 29 29 H 1.09000 * 109.47269 * 240.00071 * 2 1 3 30 30 H 1.09002 * 109.47556 * 119.99941 * 2 1 3 31 31 H 0.97006 * 120.00554 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99766 * 278.10138 * 13 3 2 33 33 H 1.08998 * 109.47406 * 64.77244 * 14 13 3 34 34 H 1.09002 * 109.47043 * 304.77327 * 14 13 3 35 35 H 0.96700 * 114.00579 * 299.99401 * 17 15 14 36 36 H 1.09000 * 109.47606 * 64.99814 * 18 15 14 37 37 H 1.09000 * 109.47662 * 304.99570 * 18 15 14 38 38 H 1.07995 * 119.98746 * 359.97438 * 20 19 18 39 39 H 1.08000 * 120.01373 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.01289 * 179.72264 * 24 22 21 41 41 H 1.07995 * 119.98639 * 180.23163 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6072 1.9809 0.8432 5 6 3.5422 1.4441 0.1205 6 1 4.1457 1.8893 -0.6567 7 6 4.1459 0.8773 1.2228 8 7 3.4110 0.3357 2.1693 9 14 6.0080 0.8800 1.3725 10 1 6.4463 2.1124 2.0755 11 1 6.4443 -0.3116 2.1437 12 1 6.6136 0.8413 0.0170 13 7 1.6486 2.1002 -1.2538 14 6 1.5506 3.5552 -1.0768 15 6 1.0273 4.1918 -2.3660 16 1 0.0423 3.7867 -2.5974 17 8 1.9256 3.9019 -3.4389 18 6 0.9246 5.7070 -2.1813 19 6 0.2950 6.3207 -3.4053 20 6 -1.0778 6.4686 -3.4753 21 6 -1.6563 7.0317 -4.5969 22 6 -0.8605 7.4482 -5.6506 23 9 -1.4250 7.9984 -6.7479 24 6 0.5139 7.2953 -5.5813 25 6 1.0906 6.7363 -4.4566 26 1 -0.3633 0.5912 0.8407 27 1 -0.3633 0.4325 -0.9322 28 1 -0.3634 -1.0235 0.0916 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8358 -0.0627 2.9451 32 1 2.2888 1.8689 -1.9987 33 1 2.5356 3.9603 -0.8453 34 1 0.8654 3.7763 -0.2584 35 1 2.8234 4.2337 -3.3008 36 1 1.9214 6.1240 -2.0377 37 1 0.3101 5.9259 -1.3081 38 1 -1.6983 6.1441 -2.6531 39 1 -2.7288 7.1468 -4.6515 40 1 1.1353 7.6157 -6.4045 41 1 2.1628 6.6203 -4.4008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569738845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:53 Heat of formation + Delta-G solvation = -91.619284 kcal Electronic energy + Delta-G solvation = -21551.419230 eV Core-core repulsion = 18151.744716 eV Total energy + Delta-G solvation = -3399.674514 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.00704 -39.50213 -37.57000 -35.61289 -32.74389 -32.28082 -31.26559 -31.07476 -28.69443 -26.51421 -24.50545 -23.18627 -22.64917 -21.44796 -21.03880 -19.44517 -17.79540 -16.85140 -16.55860 -16.31303 -15.72297 -15.47015 -15.14455 -14.88810 -14.32743 -14.07125 -13.82588 -13.67540 -13.46286 -13.25061 -12.73126 -12.30391 -12.09452 -12.00384 -11.68636 -11.54721 -11.23457 -11.17558 -11.08606 -10.90244 -10.67203 -10.63020 -10.18996 -10.01381 -9.59306 -9.38551 -9.23374 -9.08455 -8.55649 -8.40613 -7.25398 -6.02412 -4.15973 1.01915 1.10776 3.23373 3.31418 3.33751 3.44821 4.13679 4.35936 4.47557 4.55912 4.72629 4.77006 5.00259 5.11041 5.16980 5.22946 5.37851 5.55956 5.70070 5.74136 5.79720 5.92039 5.98016 6.02232 6.11368 6.27449 6.41270 6.41522 6.50602 6.58612 6.71219 6.76960 7.12227 7.17052 7.42933 7.57358 7.75158 7.89040 8.07901 8.13798 8.31440 8.66647 8.97882 9.51902 10.97368 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027339 B = 0.003245 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.923539 B = 8627.237562 C = 9261.916770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.546 4.546 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.685 5.685 14 C 0.037 3.963 15 C 0.116 3.884 16 H 0.101 0.899 17 O -0.555 6.555 18 C -0.116 4.116 19 C -0.076 4.076 20 C -0.091 4.091 21 C -0.153 4.153 22 C 0.085 3.915 23 F -0.145 7.145 24 C -0.153 4.153 25 C -0.077 4.077 26 H 0.036 0.964 27 H 0.046 0.954 28 H 0.024 0.976 29 H 0.030 0.970 30 H 0.089 0.911 31 H 0.261 0.739 32 H 0.334 0.666 33 H 0.029 0.971 34 H 0.067 0.933 35 H 0.367 0.633 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.636 12.966 -10.281 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.585 4.585 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.315 5.315 14 C -0.093 4.093 15 C 0.056 3.944 16 H 0.119 0.881 17 O -0.360 6.360 18 C -0.154 4.154 19 C -0.076 4.076 20 C -0.109 4.109 21 C -0.172 4.172 22 C 0.066 3.934 23 F -0.124 7.124 24 C -0.172 4.172 25 C -0.095 4.095 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.214 0.786 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.864 12.489 -10.281 17.986 hybrid contribution 2.383 0.611 0.346 2.484 sum -5.481 13.099 -9.935 17.330 Atomic orbital electron populations 1.21685 0.99011 0.98301 1.00306 1.21492 0.92099 0.99256 1.01644 1.19157 0.92732 0.91252 0.86153 0.95232 1.21866 0.92800 1.38271 1.05552 0.92927 1.24938 0.97928 0.94965 0.95720 1.69875 1.34853 1.38161 1.09403 0.86662 0.86065 0.77542 0.78106 1.20804 1.21133 1.19974 1.60792 1.55562 1.05141 1.09974 1.22430 0.99357 0.91638 0.95919 1.22042 0.94446 0.90518 0.87368 0.88128 1.86603 1.23443 1.81710 1.44211 1.21402 1.01673 0.97089 0.95253 1.19887 0.93447 0.97858 0.96406 1.20950 0.94478 0.97884 0.97544 1.21103 1.00351 1.02015 0.93693 1.17718 0.91726 0.99506 0.84436 1.91480 1.85553 1.83404 1.51940 1.21121 0.93023 1.02916 1.00097 1.20888 1.00249 0.96325 0.92034 0.94520 0.93477 0.95666 0.95077 0.89229 0.92862 0.84918 0.95321 0.91447 0.78637 0.90450 0.89709 0.84979 0.84966 0.85007 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.74 37.15 0.36 -2.42 16 2 C -0.11 -2.53 5.45 -26.74 -0.15 -2.68 16 3 C 0.21 5.18 1.98 -68.87 -0.14 5.04 16 4 H 0.03 0.79 7.71 -51.93 -0.40 0.39 16 5 C -0.55 -14.34 8.46 -34.44 -0.29 -14.63 16 6 H 0.05 1.37 7.73 -52.49 -0.41 0.96 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.63 11.29 55.43 0.63 -24.01 16 9 Si 0.89 20.71 29.54 -169.99 -5.02 15.68 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.68 -13.83 5.76 -107.95 -0.62 -14.45 16 14 C 0.04 0.63 5.21 -3.82 -0.02 0.61 16 15 C 0.12 1.55 3.23 -26.73 -0.09 1.46 16 16 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 17 O -0.56 -7.68 12.26 -35.23 -0.43 -8.11 16 18 C -0.12 -1.23 5.03 -27.89 -0.14 -1.37 16 19 C -0.08 -0.81 4.97 -104.62 -0.52 -1.33 16 20 C -0.09 -0.92 9.70 -39.59 -0.38 -1.31 16 21 C -0.15 -1.57 10.03 -39.51 -0.40 -1.97 16 22 C 0.09 0.96 7.30 -39.42 -0.29 0.67 16 23 F -0.15 -1.71 17.27 2.25 0.04 -1.67 16 24 C -0.15 -1.59 10.03 -39.51 -0.40 -1.99 16 25 C -0.08 -0.79 9.40 -39.59 -0.37 -1.16 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.93 7.89 -51.93 -0.41 0.52 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 2.38 5.96 -51.93 -0.31 2.07 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.33 6.90 7.92 -39.29 -0.31 6.59 16 33 H 0.03 0.51 8.11 -51.93 -0.42 0.09 16 34 H 0.07 1.15 7.94 -51.93 -0.41 0.73 16 35 H 0.37 4.04 9.05 45.56 0.41 4.45 16 36 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 37 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 344.81 15.07 5.20 5.20 Total: -1.00 -28.64 344.81 -8.74 -37.38 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -5.61 Total: 9.35 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -2.91 Total: -19.37 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.00 Total: -38.46 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.43 Total: -8.11 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.64 -8.74 -37.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569738845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.244 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds