Wall clock time and date at job start Tue Mar 31 2020 05:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47577 * 2 1 4 4 H 1.09001 * 109.47056 * 55.12942 * 3 2 1 5 5 C 1.50697 * 109.47402 * 175.13608 * 3 2 1 6 6 H 1.08002 * 119.99718 * 119.99894 * 5 3 2 7 7 C 1.37872 * 119.99839 * 299.99992 * 5 3 2 8 8 N 1.31507 * 120.00312 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99976 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47290 * 89.99395 * 9 7 5 11 11 H 1.48499 * 109.47111 * 209.99753 * 9 7 5 12 12 H 1.48510 * 109.46864 * 329.99572 * 9 7 5 13 13 N 1.46901 * 109.46994 * 295.13714 * 3 2 1 14 14 C 1.46897 * 111.00296 * 154.14530 * 13 3 2 15 15 C 1.53005 * 109.47412 * 184.77827 * 14 13 3 16 16 H 1.08994 * 109.46827 * 59.99427 * 15 14 13 17 17 O 1.42900 * 109.46442 * 300.00029 * 15 14 13 18 18 C 1.52991 * 109.47025 * 179.97438 * 15 14 13 19 19 C 1.50704 * 109.46820 * 184.99572 * 18 15 14 20 20 C 1.38247 * 119.97189 * 90.00118 * 19 18 15 21 21 C 1.38196 * 120.02625 * 179.97438 * 20 19 18 22 22 C 1.38464 * 119.97423 * 359.97438 * 21 20 19 23 23 F 1.35102 * 120.02786 * 179.97438 * 22 21 20 24 24 C 1.38460 * 119.94636 * 0.25232 * 22 21 20 25 25 C 1.38198 * 119.97472 * 359.51547 * 24 22 21 26 26 H 1.09006 * 109.47065 * 305.11466 * 1 2 3 27 27 H 1.08998 * 109.47208 * 65.11083 * 1 2 3 28 28 H 1.09000 * 109.47501 * 185.11331 * 1 2 3 29 29 H 1.09000 * 109.47269 * 240.00071 * 2 1 3 30 30 H 1.09002 * 109.47556 * 119.99941 * 2 1 3 31 31 H 0.97006 * 120.00554 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99766 * 278.10138 * 13 3 2 33 33 H 1.08998 * 109.47406 * 64.77244 * 14 13 3 34 34 H 1.09002 * 109.47043 * 304.77327 * 14 13 3 35 35 H 0.96700 * 114.00579 * 299.99401 * 17 15 14 36 36 H 1.09000 * 109.47606 * 64.99814 * 18 15 14 37 37 H 1.09000 * 109.47662 * 304.99570 * 18 15 14 38 38 H 1.07995 * 119.98746 * 359.97438 * 20 19 18 39 39 H 1.08000 * 120.01373 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.01289 * 179.72264 * 24 22 21 41 41 H 1.07995 * 119.98639 * 180.23163 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6072 1.9809 0.8432 5 6 3.5422 1.4441 0.1205 6 1 4.1457 1.8893 -0.6567 7 6 4.1459 0.8773 1.2228 8 7 3.4110 0.3357 2.1693 9 14 6.0080 0.8800 1.3725 10 1 6.4463 2.1124 2.0755 11 1 6.4443 -0.3116 2.1437 12 1 6.6136 0.8413 0.0170 13 7 1.6486 2.1002 -1.2538 14 6 1.5506 3.5552 -1.0768 15 6 1.0273 4.1918 -2.3660 16 1 0.0423 3.7867 -2.5974 17 8 1.9256 3.9019 -3.4389 18 6 0.9246 5.7070 -2.1813 19 6 0.2950 6.3207 -3.4053 20 6 -1.0778 6.4686 -3.4753 21 6 -1.6563 7.0317 -4.5969 22 6 -0.8605 7.4482 -5.6506 23 9 -1.4250 7.9984 -6.7479 24 6 0.5139 7.2953 -5.5813 25 6 1.0906 6.7363 -4.4566 26 1 -0.3633 0.5912 0.8407 27 1 -0.3633 0.4325 -0.9322 28 1 -0.3634 -1.0235 0.0916 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8358 -0.0627 2.9451 32 1 2.2888 1.8689 -1.9987 33 1 2.5356 3.9603 -0.8453 34 1 0.8654 3.7763 -0.2584 35 1 2.8234 4.2337 -3.3008 36 1 1.9214 6.1240 -2.0377 37 1 0.3101 5.9259 -1.3081 38 1 -1.6983 6.1441 -2.6531 39 1 -2.7288 7.1468 -4.6515 40 1 1.1353 7.6157 -6.4045 41 1 2.1628 6.6203 -4.4008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569738845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:53 Heat of formation + Delta-G solvation = -109.163658 kcal Electronic energy + Delta-G solvation = -21552.180011 eV Core-core repulsion = 18151.744716 eV Total energy + Delta-G solvation = -3400.435295 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.86506 -40.34895 -38.77941 -37.24694 -34.25243 -33.56400 -32.75194 -32.02273 -29.93701 -28.16420 -25.90525 -24.33303 -23.94836 -22.58699 -22.05468 -21.28842 -18.75908 -18.59885 -17.46414 -17.42156 -16.80100 -16.59750 -16.51842 -16.06872 -15.62363 -15.45857 -15.00733 -14.84750 -14.45471 -14.39312 -14.26557 -13.75443 -13.44034 -13.11677 -13.07616 -13.00022 -12.75180 -12.59555 -12.52248 -12.41413 -12.04212 -11.84492 -11.75243 -11.56953 -11.48133 -11.04887 -10.73773 -10.44578 -10.00067 -9.41573 -8.98298 -8.03458 -6.26498 0.20285 0.34375 1.38777 1.41509 1.50052 2.41031 2.64668 3.15519 3.34218 3.44766 3.74324 3.85007 3.90368 4.03072 4.25445 4.38536 4.41773 4.46396 4.46713 4.61015 4.72978 4.77667 4.94196 4.95196 4.96153 5.04567 5.16790 5.20005 5.21277 5.31509 5.34159 5.43310 5.53805 5.64458 5.67117 5.78734 5.99379 6.11824 6.22847 6.42073 6.84717 6.95957 7.06329 7.45464 8.92298 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027339 B = 0.003245 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.923539 B = 8627.237562 C = 9261.916770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 C 0.222 3.778 4 H 0.000 1.000 5 C -0.558 4.558 6 H 0.052 0.948 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.950 3.050 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.680 5.680 14 C 0.039 3.961 15 C 0.132 3.868 16 H 0.092 0.908 17 O -0.567 6.567 18 C -0.106 4.106 19 C -0.085 4.085 20 C -0.096 4.096 21 C -0.158 4.158 22 C 0.067 3.933 23 F -0.152 7.152 24 C -0.159 4.159 25 C -0.082 4.082 26 H 0.032 0.968 27 H 0.056 0.944 28 H 0.042 0.958 29 H 0.025 0.975 30 H 0.060 0.940 31 H 0.261 0.739 32 H 0.332 0.668 33 H 0.021 0.979 34 H 0.063 0.937 35 H 0.380 0.620 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.409 13.738 -10.970 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 C 0.113 3.887 4 H 0.018 0.982 5 C -0.597 4.597 6 H 0.070 0.930 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.776 3.224 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 N -0.309 5.309 14 C -0.092 4.092 15 C 0.072 3.928 16 H 0.110 0.890 17 O -0.373 6.373 18 C -0.144 4.144 19 C -0.085 4.085 20 C -0.114 4.114 21 C -0.176 4.176 22 C 0.048 3.952 23 F -0.131 7.131 24 C -0.177 4.177 25 C -0.100 4.100 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.149 0.851 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.228 0.772 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.635 13.279 -10.985 18.849 hybrid contribution 2.298 0.385 0.541 2.392 sum -5.338 13.663 -10.443 18.007 Atomic orbital electron populations 1.21541 0.96417 0.99506 1.00600 1.21373 0.94422 0.98681 0.99822 1.18927 0.91561 0.91410 0.86789 0.98224 1.22189 0.94101 1.37953 1.05493 0.93016 1.25675 1.02072 0.94800 0.95569 1.70006 1.36430 1.38845 1.09820 0.85684 0.81091 0.77475 0.78122 1.20280 1.21127 1.19425 1.60717 1.54896 1.07240 1.08056 1.22516 0.99046 0.89642 0.97978 1.21786 0.93596 0.92138 0.85231 0.89041 1.86574 1.24462 1.82149 1.44142 1.21274 1.02683 0.94682 0.95735 1.19964 0.93796 0.98254 0.96470 1.21194 0.94642 0.97568 0.97970 1.21328 1.01244 1.01621 0.93431 1.17994 0.92369 1.00220 0.84648 1.91459 1.85699 1.83618 1.52328 1.21342 0.92988 1.02723 1.00685 1.21116 1.01120 0.95978 0.91779 0.94908 0.92504 0.93882 0.95619 0.92194 0.92943 0.85087 0.96103 0.91845 0.77166 0.89301 0.88744 0.83414 0.83463 0.83615 0.83631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.74 71.98 0.70 -4.26 16 2 C -0.10 -5.00 5.45 30.59 0.17 -4.83 16 3 C 0.22 10.79 1.98 44.17 0.09 10.88 16 4 H 0.00 -0.01 7.71 -2.39 -0.02 -0.03 16 5 C -0.56 -29.42 8.46 25.60 0.22 -29.21 16 6 H 0.05 2.67 7.73 -2.91 -0.02 2.65 16 7 C 0.02 1.01 5.29 84.65 0.45 1.46 16 8 N -0.91 -51.43 11.29 21.44 0.24 -51.19 16 9 Si 0.95 42.39 29.54 68.60 2.03 44.42 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 12 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 13 N -0.68 -27.15 5.76 -495.45 -2.85 -30.00 16 14 C 0.04 1.26 5.21 86.31 0.45 1.71 16 15 C 0.13 3.31 3.23 30.59 0.10 3.41 16 16 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 17 O -0.57 -14.64 12.26 -148.98 -1.83 -16.47 16 18 C -0.11 -2.00 5.03 29.85 0.15 -1.85 16 19 C -0.08 -1.63 4.97 -19.86 -0.10 -1.73 16 20 C -0.10 -1.77 9.70 22.26 0.22 -1.56 16 21 C -0.16 -3.01 10.03 22.31 0.22 -2.78 16 22 C 0.07 1.42 7.30 22.38 0.16 1.58 16 23 F -0.15 -3.46 17.27 44.97 0.78 -2.69 16 24 C -0.16 -3.06 10.03 22.31 0.22 -2.84 16 25 C -0.08 -1.52 9.40 22.26 0.21 -1.31 16 26 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.06 2.16 7.89 -2.39 -0.02 2.14 16 28 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 3.24 5.96 -2.39 -0.01 3.23 16 31 H 0.26 14.07 8.31 -92.70 -0.77 13.30 16 32 H 0.33 13.51 7.92 -89.69 -0.71 12.80 16 33 H 0.02 0.72 8.11 -2.39 -0.02 0.70 16 34 H 0.06 2.12 7.94 -2.39 -0.02 2.10 16 35 H 0.38 7.59 9.05 -74.06 -0.67 6.92 16 36 H 0.09 1.50 8.08 -2.39 -0.02 1.48 16 37 H 0.09 1.63 8.08 -2.39 -0.02 1.61 16 38 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 40 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 41 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -60.66 344.81 1.27 -59.39 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: -0.35 Total: 27.87 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 3.26 Total: -31.33 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -2.61 Total: -81.19 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -1.83 Total: -16.47 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.78 Total: -2.69 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -60.66 1.27 -59.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569738845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.774 kcal (2) G-P(sol) polarization free energy of solvation -60.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds