Wall clock time and date at job start Tue Mar 31 2020 05:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47073 * 2 1 4 4 H 1.08998 * 109.47214 * 305.60396 * 3 2 1 5 5 C 1.50698 * 109.47161 * 185.60205 * 3 2 1 6 6 H 1.07996 * 120.00061 * 275.10544 * 5 3 2 7 7 C 1.37880 * 119.99938 * 94.82317 * 5 3 2 8 8 N 1.31507 * 120.00264 * 186.41794 * 7 5 3 9 9 Si 1.86807 * 119.99831 * 6.42203 * 7 5 3 10 10 H 1.48507 * 109.46814 * 86.57808 * 9 7 5 11 11 H 1.48501 * 109.47116 * 206.57890 * 9 7 5 12 12 H 1.48499 * 109.46951 * 326.58099 * 9 7 5 13 13 N 1.46904 * 109.46654 * 65.60596 * 3 2 1 14 14 C 1.46901 * 110.99507 * 248.82042 * 13 3 2 15 15 C 1.53003 * 109.46928 * 183.45568 * 14 13 3 16 16 H 1.09002 * 109.46608 * 60.00869 * 15 14 13 17 17 O 1.42894 * 109.47426 * 300.00668 * 15 14 13 18 18 C 1.52998 * 109.47094 * 180.02562 * 15 14 13 19 19 C 1.50699 * 109.47141 * 185.00282 * 18 15 14 20 20 C 1.38245 * 119.97656 * 269.73289 * 19 18 15 21 21 C 1.38201 * 120.02919 * 179.72928 * 20 19 18 22 22 C 1.38462 * 119.97035 * 0.56158 * 21 20 19 23 23 F 1.35094 * 120.02527 * 179.68511 * 22 21 20 24 24 C 1.38464 * 119.94732 * 359.70901 * 22 21 20 25 25 C 1.38192 * 119.97611 * 0.02562 * 24 22 21 26 26 H 1.09003 * 109.47055 * 296.26303 * 1 2 3 27 27 H 1.09001 * 109.47242 * 56.25933 * 1 2 3 28 28 H 1.09000 * 109.47105 * 176.26483 * 1 2 3 29 29 H 1.08998 * 109.47327 * 240.00156 * 2 1 3 30 30 H 1.08998 * 109.47010 * 120.00035 * 2 1 3 31 31 H 0.97001 * 120.00167 * 180.02562 * 8 7 5 32 32 H 1.00898 * 111.00471 * 12.78127 * 13 3 2 33 33 H 1.08992 * 109.47501 * 303.46157 * 14 13 3 34 34 H 1.09002 * 109.46767 * 63.46535 * 14 13 3 35 35 H 0.96699 * 114.00387 * 299.99653 * 17 15 14 36 36 H 1.08998 * 109.47642 * 305.00404 * 18 15 14 37 37 H 1.09003 * 109.47291 * 65.00711 * 18 15 14 38 38 H 1.08004 * 119.98496 * 359.97234 * 20 19 18 39 39 H 1.07998 * 120.01392 * 180.25023 * 21 20 19 40 40 H 1.07998 * 120.01077 * 180.02562 * 24 22 21 41 41 H 1.07995 * 119.98924 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5971 1.9846 -0.8355 5 6 3.5406 1.4449 -0.1387 6 1 4.1639 1.3322 0.7360 7 6 4.1177 1.5850 -1.3830 8 7 5.4195 1.4609 -1.5219 9 14 3.0503 1.9511 -2.8718 10 1 2.8543 3.4183 -2.9915 11 1 3.7163 1.4391 -4.0963 12 1 1.7318 1.2871 -2.7108 13 7 1.6639 2.0948 1.2614 14 6 0.6511 3.1344 1.0348 15 6 0.3485 3.8479 2.3541 16 1 1.2605 4.3064 2.7365 17 8 -0.1442 2.9020 3.3051 18 6 -0.7068 4.9302 2.1182 19 6 -0.9154 5.7138 3.3885 20 6 -1.8740 5.3105 4.2993 21 6 -2.0623 6.0250 5.4672 22 6 -1.2984 7.1519 5.7194 23 9 -1.4860 7.8548 6.8577 24 6 -0.3424 7.5581 4.8038 25 6 -0.1521 6.8389 3.6393 26 1 -0.3633 0.4547 0.9216 27 1 -0.3634 0.5708 -0.8546 28 1 -0.3633 -1.0255 -0.0669 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8256 1.5599 -2.3973 32 1 1.3423 1.4177 1.9368 33 1 1.0269 3.8559 0.3094 34 1 -0.2609 2.6760 0.6523 35 1 -0.9560 2.4543 3.0302 36 1 -0.3688 5.6014 1.3287 37 1 -1.6459 4.4635 1.8210 38 1 -2.4733 4.4344 4.0999 39 1 -2.8085 5.7074 6.1804 40 1 0.2543 8.4367 4.9997 41 1 0.5937 7.1552 2.9252 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569738847.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:56 Heat of formation + Delta-G solvation = -85.729651 kcal Electronic energy + Delta-G solvation = -21666.851650 eV Core-core repulsion = 18267.432529 eV Total energy + Delta-G solvation = -3399.419120 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.02944 -39.56407 -37.81432 -36.00034 -32.80810 -32.26345 -31.40389 -31.28204 -28.84558 -27.21466 -24.65018 -23.21894 -22.67739 -21.58057 -21.18307 -19.69368 -17.82479 -17.06814 -16.63680 -16.35865 -15.77544 -15.67171 -15.33157 -14.86877 -14.50000 -14.20959 -14.08880 -13.72453 -13.54797 -13.41264 -12.90590 -12.70171 -12.28100 -12.09777 -11.95926 -11.85904 -11.66075 -11.47300 -11.12480 -10.93803 -10.83788 -10.74318 -10.41518 -10.12134 -9.81115 -9.65772 -9.26784 -9.22928 -8.62413 -8.47775 -7.28063 -6.03921 -3.99679 0.98530 1.07896 3.24817 3.32682 3.34349 3.41196 4.11145 4.36367 4.41141 4.51224 4.66096 4.71391 4.85430 5.04403 5.11739 5.20991 5.31241 5.43030 5.52782 5.58727 5.69159 5.74782 5.76578 5.81042 5.93375 5.95463 5.95841 6.07473 6.10168 6.25427 6.41407 6.43553 6.51718 6.72877 6.73624 6.84335 7.13880 7.74285 7.77056 7.95051 8.41485 8.72918 9.09518 9.59711 11.10023 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026443 B = 0.003418 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.636323 B = 8188.998151 C = 8650.127952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.185 3.815 4 H 0.026 0.974 5 C -0.487 4.487 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.871 3.129 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.268 1.268 13 N -0.669 5.669 14 C 0.029 3.971 15 C 0.115 3.885 16 H 0.108 0.892 17 O -0.553 6.553 18 C -0.116 4.116 19 C -0.077 4.077 20 C -0.077 4.077 21 C -0.153 4.153 22 C 0.087 3.913 23 F -0.144 7.144 24 C -0.152 4.152 25 C -0.089 4.089 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.262 0.738 32 H 0.329 0.671 33 H 0.074 0.926 34 H 0.018 0.982 35 H 0.364 0.636 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.177 8.506 8.982 21.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.181 4.181 3 C 0.077 3.923 4 H 0.044 0.956 5 C -0.526 4.526 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.699 3.301 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.193 1.193 13 N -0.300 5.300 14 C -0.101 4.101 15 C 0.056 3.944 16 H 0.126 0.874 17 O -0.357 6.357 18 C -0.154 4.154 19 C -0.078 4.078 20 C -0.095 4.095 21 C -0.172 4.172 22 C 0.068 3.932 23 F -0.123 7.123 24 C -0.171 4.171 25 C -0.107 4.107 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.147 0.853 33 H 0.092 0.908 34 H 0.036 0.964 35 H 0.210 0.790 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.960 9.178 9.196 20.580 hybrid contribution -1.753 -0.308 -1.262 2.182 sum -17.714 8.869 7.934 21.340 Atomic orbital electron populations 1.21932 0.98637 1.00269 1.00317 1.22341 0.92446 1.01371 1.01921 1.19736 0.96672 0.88748 0.87140 0.95572 1.20983 0.89128 1.47968 0.94490 0.90432 1.25012 0.94732 0.95231 0.98411 1.69898 1.09799 1.50470 1.23797 0.86969 0.81100 0.78940 0.83121 1.20368 1.21517 1.19262 1.60765 1.39797 1.16593 1.12872 1.22687 0.94319 0.96727 0.96395 1.22055 0.95584 0.87378 0.89411 0.87425 1.86656 1.45457 1.57544 1.46006 1.21394 1.00801 0.98451 0.94725 1.19844 0.95826 0.95297 0.96805 1.20857 0.97436 0.98636 0.92615 1.21112 1.01320 0.95484 0.99292 1.17723 0.98765 0.92888 0.83866 1.91481 1.94568 1.77913 1.48356 1.21121 0.99120 1.02082 0.94748 1.20974 0.98785 0.94383 0.96550 0.93750 0.93822 0.93829 0.92185 0.92359 0.92764 0.85306 0.90766 0.96364 0.79044 0.89595 0.90616 0.85241 0.85001 0.84879 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.22 37.16 0.34 -2.12 16 2 C -0.14 -2.84 5.19 -26.73 -0.14 -2.98 16 3 C 0.18 4.16 1.85 -68.86 -0.13 4.03 16 4 H 0.03 0.61 4.59 -51.93 -0.24 0.37 16 5 C -0.49 -13.53 9.19 -34.44 -0.32 -13.85 16 6 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 8 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 9 Si 0.87 21.10 27.09 -169.99 -4.60 16.49 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.14 6.69 56.52 0.38 -5.76 16 13 N -0.67 -13.08 6.06 -107.95 -0.65 -13.73 16 14 C 0.03 0.45 4.91 -3.82 -0.02 0.43 16 15 C 0.12 1.47 3.23 -26.73 -0.09 1.38 16 16 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 17 O -0.55 -6.96 12.24 -35.23 -0.43 -7.39 16 18 C -0.12 -1.14 5.03 -27.88 -0.14 -1.28 16 19 C -0.08 -0.80 4.96 -104.62 -0.52 -1.32 16 20 C -0.08 -0.75 9.41 -39.59 -0.37 -1.12 16 21 C -0.15 -1.54 10.03 -39.51 -0.40 -1.93 16 22 C 0.09 0.96 7.30 -39.42 -0.29 0.67 16 23 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 24 C -0.15 -1.57 10.03 -39.51 -0.40 -1.96 16 25 C -0.09 -0.91 9.70 -39.59 -0.38 -1.29 16 26 H 0.04 0.63 6.88 -51.93 -0.36 0.27 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.33 6.05 7.01 -39.29 -0.28 5.77 16 33 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 34 H 0.02 0.26 7.19 -51.93 -0.37 -0.11 16 35 H 0.36 3.29 9.05 45.56 0.41 3.70 16 36 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 38 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 39 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 341.23 15.07 5.14 5.14 Total: -1.00 -31.25 341.23 -8.15 -39.40 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.47 Total: 7.92 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -2.94 Total: -19.52 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.12 Total: -40.41 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.43 Total: -7.39 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.60 Total: 16.49 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.25 -8.15 -39.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569738847.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.326 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds