Wall clock time and date at job start Tue Mar 31 2020 05:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35893 * 116.99752 * 2 1 4 4 C 1.38773 * 120.04607 * 0.02562 * 3 2 1 5 5 C 1.38130 * 119.99517 * 179.69812 * 4 3 2 6 6 C 1.38255 * 120.07924 * 0.53577 * 5 4 3 7 7 C 1.50703 * 119.95539 * 179.76449 * 6 5 4 8 8 N 1.46899 * 109.47107 * 259.72195 * 7 6 5 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46950 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47312 * 300.00123 * 10 9 8 12 12 C 1.52997 * 109.47169 * 60.00159 * 10 9 8 13 13 C 1.50698 * 109.47092 * 180.02562 * 10 9 8 14 14 H 1.08009 * 119.99873 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00054 * 180.02562 * 13 10 9 16 16 N 1.31504 * 120.00303 * 359.97438 * 15 13 10 17 17 Si 1.86809 * 119.99645 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47069 * 60.00160 * 17 15 13 19 19 H 1.48500 * 109.46785 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47146 * 299.99864 * 17 15 13 21 21 C 1.38473 * 120.08680 * 359.49035 * 6 5 4 22 22 F 1.35097 * 119.99985 * 180.25832 * 21 6 5 23 23 C 1.38385 * 120.00146 * 0.22694 * 21 6 5 24 24 H 1.09003 * 109.47114 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47392 * 299.99519 * 1 2 3 26 26 H 1.09004 * 109.47277 * 60.00315 * 1 2 3 27 27 H 1.07998 * 119.99426 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.96085 * 180.29529 * 5 4 3 29 29 H 1.09002 * 109.47152 * 139.72283 * 7 6 5 30 30 H 1.09001 * 109.46980 * 19.72383 * 7 6 5 31 31 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 32 32 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 33 33 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 34 34 H 1.09002 * 109.47029 * 60.00405 * 11 10 9 35 35 H 1.09000 * 109.47152 * 180.02562 * 11 10 9 36 36 H 1.08993 * 109.47356 * 300.00089 * 11 10 9 37 37 H 1.09005 * 109.46874 * 60.00300 * 12 10 9 38 38 H 1.09000 * 109.47103 * 179.97438 * 12 10 9 39 39 H 1.09002 * 109.47446 * 299.99763 * 12 10 9 40 40 H 0.96998 * 120.00316 * 180.02562 * 16 15 13 41 41 H 1.08005 * 120.03880 * 180.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2909 2.3753 0.0005 5 6 1.9191 3.6055 0.0068 6 6 3.2997 3.6786 0.0014 7 6 3.9820 5.0223 0.0030 8 7 4.4185 5.3514 -1.3605 9 6 5.0890 6.6580 -1.3978 10 6 5.5275 6.9655 -2.8309 11 6 6.4948 5.8820 -3.3119 12 6 4.3005 6.9957 -3.7443 13 6 6.2159 8.3055 -2.8690 14 1 6.3296 8.8802 -1.9616 15 6 6.7005 8.7979 -4.0622 16 7 6.5625 8.0980 -5.1670 17 14 7.5544 10.4587 -4.1092 18 1 8.7459 10.4280 -3.2234 19 1 7.9789 10.7578 -5.5005 20 1 6.6167 11.5109 -3.6413 21 6 4.0563 2.5189 0.0003 22 9 5.4052 2.5924 0.0003 23 6 3.4306 1.2845 -0.0001 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2124 2.3195 0.0005 28 1 1.3310 4.5113 0.0121 29 1 4.8483 4.9891 0.6637 30 1 3.2854 5.7831 0.3551 31 1 5.0146 4.6280 -1.7340 32 1 4.3998 7.4299 -1.0555 33 1 5.9629 6.6365 -0.7466 34 1 5.9973 4.9125 -3.2843 35 1 6.8076 6.1013 -4.3328 36 1 7.3689 5.8604 -2.6612 37 1 3.6115 7.7677 -3.4017 38 1 4.6129 7.2152 -4.7653 39 1 3.8030 6.0262 -3.7168 40 1 6.9038 8.4443 -6.0063 41 1 4.0202 0.3796 -0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573125350.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:39 Heat of formation + Delta-G solvation = -63.025755 kcal Electronic energy + Delta-G solvation = -21932.666308 eV Core-core repulsion = 18534.231703 eV Total energy + Delta-G solvation = -3398.434606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.90750 -40.24997 -37.88801 -36.64023 -33.99955 -31.55065 -30.87320 -29.65278 -27.73434 -25.52351 -25.34520 -25.08660 -23.02681 -22.93254 -21.18541 -18.62065 -18.42442 -17.07399 -16.24804 -16.11680 -16.00988 -15.58316 -15.44100 -14.88251 -14.72723 -14.43563 -13.90130 -13.83312 -13.08078 -12.89075 -12.62975 -12.60515 -12.36082 -12.05808 -11.83279 -11.53566 -11.13118 -11.07450 -11.02836 -10.90140 -10.61801 -10.55556 -10.13669 -10.03205 -9.34672 -9.07271 -8.96920 -8.60867 -8.32673 -8.24947 -7.67522 -5.87993 -3.98549 1.04684 1.17974 2.90760 3.34792 3.39478 3.41874 3.46008 4.32518 4.46426 4.55764 4.75215 4.76588 4.84187 4.86149 5.12973 5.15212 5.20371 5.24215 5.37245 5.63439 5.83437 5.92167 5.94240 6.10640 6.34034 6.36977 6.46424 6.58686 6.75761 6.93428 7.11041 7.11962 7.21470 7.41752 7.49923 7.74004 7.79510 7.85705 7.97357 8.24699 8.37856 8.59007 9.02718 9.66214 11.12534 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036085 B = 0.003305 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.752882 B = 8470.557488 C = 8610.703053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.148 3.852 4 C -0.218 4.218 5 C -0.034 4.034 6 C -0.138 4.138 7 C 0.099 3.901 8 N -0.681 5.681 9 C 0.074 3.926 10 C 0.070 3.930 11 C -0.133 4.133 12 C -0.119 4.119 13 C -0.507 4.507 14 H 0.051 0.949 15 C 0.065 3.935 16 N -0.885 5.885 17 Si 0.889 3.111 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.143 3.857 22 F -0.131 7.131 23 C -0.190 4.190 24 H 0.100 0.900 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.133 0.867 28 H 0.137 0.863 29 H 0.034 0.966 30 H 0.080 0.920 31 H 0.339 0.661 32 H 0.057 0.943 33 H 0.014 0.986 34 H 0.010 0.990 35 H 0.083 0.917 36 H 0.019 0.981 37 H 0.018 0.982 38 H 0.074 0.926 39 H 0.020 0.980 40 H 0.258 0.742 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.595 -13.965 10.827 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.102 3.898 4 C -0.237 4.237 5 C -0.053 4.053 6 C -0.140 4.140 7 C -0.031 4.031 8 N -0.313 5.313 9 C -0.054 4.054 10 C 0.069 3.931 11 C -0.190 4.190 12 C -0.176 4.176 13 C -0.546 4.546 14 H 0.070 0.930 15 C -0.135 4.135 16 N -0.524 5.524 17 Si 0.717 3.283 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.204 1.204 21 C 0.123 3.877 22 F -0.109 7.109 23 C -0.210 4.210 24 H 0.118 0.882 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.151 0.849 28 H 0.155 0.845 29 H 0.052 0.948 30 H 0.098 0.902 31 H 0.158 0.842 32 H 0.076 0.924 33 H 0.033 0.967 34 H 0.029 0.971 35 H 0.102 0.898 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.092 0.908 39 H 0.039 0.961 40 H 0.069 0.931 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.016 -13.872 10.440 21.114 hybrid contribution 1.341 0.825 0.377 1.619 sum -10.675 -13.047 10.817 20.030 Atomic orbital electron populations 1.23088 0.78063 1.04013 1.01625 1.86053 1.21610 1.26675 1.88591 1.18562 0.91338 0.84368 0.95487 1.21261 1.00305 0.92064 1.10079 1.20718 0.92862 0.97454 0.94246 1.19921 0.94175 0.94486 1.05389 1.20765 0.98174 0.91886 0.92224 1.60718 1.46891 1.05906 1.17756 1.22186 0.94722 0.88189 1.00264 1.18080 0.92655 0.93969 0.88396 1.21836 0.97882 0.95467 1.03857 1.21636 0.96461 0.96839 1.02702 1.21078 1.36752 1.02874 0.93909 0.93040 1.24883 0.95932 0.97024 0.95709 1.69822 1.46422 1.37334 0.98785 0.86720 0.79991 0.84723 0.76864 1.20474 1.21372 1.20415 1.17178 0.76991 0.93200 1.00360 1.91523 1.28814 1.97081 1.93510 1.20161 0.92530 0.97462 1.10818 0.88181 0.92497 0.92340 0.84942 0.84507 0.94773 0.90168 0.84189 0.92440 0.96746 0.97090 0.89812 0.96182 0.96329 0.90756 0.96128 0.93139 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.30 10.50 -19.41 -0.20 -3.50 16 3 C 0.15 1.72 6.68 -39.22 -0.26 1.46 16 4 C -0.22 -2.30 9.04 -39.42 -0.36 -2.65 16 5 C -0.03 -0.40 9.66 -39.61 -0.38 -0.78 16 6 C -0.14 -1.92 5.40 -104.53 -0.56 -2.49 16 7 C 0.10 1.51 5.53 -4.98 -0.03 1.49 16 8 N -0.68 -12.68 5.70 -115.05 -0.66 -13.34 16 9 C 0.07 1.59 4.59 -3.82 -0.02 1.57 16 10 C 0.07 1.72 0.57 -155.66 -0.09 1.63 16 11 C -0.13 -3.24 7.92 37.16 0.29 -2.95 16 12 C -0.12 -2.94 8.09 37.16 0.30 -2.64 16 13 C -0.51 -13.85 8.01 -34.44 -0.28 -14.13 16 14 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 15 C 0.07 1.80 5.15 -17.82 -0.09 1.70 16 16 N -0.88 -24.84 9.35 55.43 0.52 -24.32 16 17 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.14 2.02 7.24 -39.44 -0.29 1.73 16 22 F -0.13 -2.01 16.66 2.25 0.04 -1.97 16 23 C -0.19 -2.41 9.97 -39.37 -0.39 -2.80 16 24 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 26 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 27 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 28 H 0.14 1.38 8.03 -52.49 -0.42 0.96 16 29 H 0.03 0.53 7.94 -51.93 -0.41 0.12 16 30 H 0.08 1.14 8.00 -51.93 -0.42 0.72 16 31 H 0.34 6.54 6.76 -39.29 -0.27 6.28 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 35 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 2.01 6.07 -51.93 -0.32 1.70 16 39 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 334.21 15.07 5.04 5.04 Total: -1.00 -29.16 334.21 -7.53 -36.69 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.09 Total: 2.80 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -1.16 Total: -17.70 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.14 Total: -37.65 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: -0.20 Total: -3.50 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.16 -7.53 -36.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573125350.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.336 kcal (2) G-P(sol) polarization free energy of solvation -29.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds