Wall clock time and date at job start Tue Mar 31 2020 05:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35893 * 116.99752 * 2 1 4 4 C 1.38773 * 120.04607 * 0.02562 * 3 2 1 5 5 C 1.38130 * 119.99517 * 179.69812 * 4 3 2 6 6 C 1.38255 * 120.07924 * 0.53577 * 5 4 3 7 7 C 1.50703 * 119.95539 * 179.76449 * 6 5 4 8 8 N 1.46899 * 109.47107 * 259.72195 * 7 6 5 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46950 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47312 * 300.00123 * 10 9 8 12 12 C 1.52997 * 109.47169 * 60.00159 * 10 9 8 13 13 C 1.50698 * 109.47092 * 180.02562 * 10 9 8 14 14 H 1.08009 * 119.99873 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00054 * 180.02562 * 13 10 9 16 16 N 1.31504 * 120.00303 * 359.97438 * 15 13 10 17 17 Si 1.86809 * 119.99645 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47069 * 60.00160 * 17 15 13 19 19 H 1.48500 * 109.46785 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47146 * 299.99864 * 17 15 13 21 21 C 1.38473 * 120.08680 * 359.49035 * 6 5 4 22 22 F 1.35097 * 119.99985 * 180.25832 * 21 6 5 23 23 C 1.38385 * 120.00146 * 0.22694 * 21 6 5 24 24 H 1.09003 * 109.47114 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47392 * 299.99519 * 1 2 3 26 26 H 1.09004 * 109.47277 * 60.00315 * 1 2 3 27 27 H 1.07998 * 119.99426 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.96085 * 180.29529 * 5 4 3 29 29 H 1.09002 * 109.47152 * 139.72283 * 7 6 5 30 30 H 1.09001 * 109.46980 * 19.72383 * 7 6 5 31 31 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 32 32 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 33 33 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 34 34 H 1.09002 * 109.47029 * 60.00405 * 11 10 9 35 35 H 1.09000 * 109.47152 * 180.02562 * 11 10 9 36 36 H 1.08993 * 109.47356 * 300.00089 * 11 10 9 37 37 H 1.09005 * 109.46874 * 60.00300 * 12 10 9 38 38 H 1.09000 * 109.47103 * 179.97438 * 12 10 9 39 39 H 1.09002 * 109.47446 * 299.99763 * 12 10 9 40 40 H 0.96998 * 120.00316 * 180.02562 * 16 15 13 41 41 H 1.08005 * 120.03880 * 180.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2909 2.3753 0.0005 5 6 1.9191 3.6055 0.0068 6 6 3.2997 3.6786 0.0014 7 6 3.9820 5.0223 0.0030 8 7 4.4185 5.3514 -1.3605 9 6 5.0890 6.6580 -1.3978 10 6 5.5275 6.9655 -2.8309 11 6 6.4948 5.8820 -3.3119 12 6 4.3005 6.9957 -3.7443 13 6 6.2159 8.3055 -2.8690 14 1 6.3296 8.8802 -1.9616 15 6 6.7005 8.7979 -4.0622 16 7 6.5625 8.0980 -5.1670 17 14 7.5544 10.4587 -4.1092 18 1 8.7459 10.4280 -3.2234 19 1 7.9789 10.7578 -5.5005 20 1 6.6167 11.5109 -3.6413 21 6 4.0563 2.5189 0.0003 22 9 5.4052 2.5924 0.0003 23 6 3.4306 1.2845 -0.0001 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2124 2.3195 0.0005 28 1 1.3310 4.5113 0.0121 29 1 4.8483 4.9891 0.6637 30 1 3.2854 5.7831 0.3551 31 1 5.0146 4.6280 -1.7340 32 1 4.3998 7.4299 -1.0555 33 1 5.9629 6.6365 -0.7466 34 1 5.9973 4.9125 -3.2843 35 1 6.8076 6.1013 -4.3328 36 1 7.3689 5.8604 -2.6612 37 1 3.6115 7.7677 -3.4017 38 1 4.6129 7.2152 -4.7653 39 1 3.8030 6.0262 -3.7168 40 1 6.9038 8.4443 -6.0063 41 1 4.0202 0.3796 -0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573125350.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:39 Heat of formation + Delta-G solvation = -79.552168 kcal Electronic energy + Delta-G solvation = -21933.382947 eV Core-core repulsion = 18534.231703 eV Total energy + Delta-G solvation = -3399.151245 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.00512 -41.08176 -39.03423 -38.13936 -35.58273 -33.21363 -31.93064 -30.90081 -28.40419 -27.52051 -27.24688 -26.56446 -24.50314 -23.88573 -22.19197 -20.34383 -19.46026 -18.02004 -17.95401 -17.21627 -16.96161 -16.94963 -16.42253 -16.37796 -15.99051 -15.63111 -15.49539 -14.93386 -14.52410 -14.27837 -14.08503 -13.80061 -13.41920 -13.27091 -13.20496 -12.97659 -12.85222 -12.64783 -12.53053 -12.30508 -12.11048 -12.07669 -11.87704 -11.84560 -11.31445 -10.95860 -10.61110 -10.34006 -9.90451 -9.36998 -9.08245 -7.95918 -6.13288 0.10883 0.24413 1.44571 1.44673 1.51959 2.19082 2.46339 2.52934 3.26009 3.37385 3.53012 3.71713 3.84300 3.94228 4.21668 4.27993 4.44847 4.45314 4.52756 4.54427 4.67319 4.71429 4.79973 4.86622 4.97260 5.01867 5.03575 5.16822 5.22450 5.27718 5.41784 5.43832 5.53229 5.66698 5.69921 5.76501 6.14063 6.21752 6.32055 6.34741 6.46226 6.57097 6.95865 7.54284 9.02314 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036085 B = 0.003305 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.752882 B = 8470.557488 C = 8610.703053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.330 6.330 3 C 0.149 3.851 4 C -0.209 4.209 5 C -0.033 4.033 6 C -0.155 4.155 7 C 0.102 3.898 8 N -0.680 5.680 9 C 0.088 3.912 10 C 0.060 3.940 11 C -0.121 4.121 12 C -0.104 4.104 13 C -0.528 4.528 14 H 0.047 0.953 15 C 0.022 3.978 16 N -0.905 5.905 17 Si 0.946 3.054 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.123 3.877 22 F -0.146 7.146 23 C -0.202 4.202 24 H 0.120 0.880 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.165 0.835 28 H 0.156 0.844 29 H 0.028 0.972 30 H 0.094 0.906 31 H 0.334 0.666 32 H 0.058 0.942 33 H 0.007 0.993 34 H 0.027 0.973 35 H 0.057 0.943 36 H 0.014 0.986 37 H 0.014 0.986 38 H 0.048 0.952 39 H 0.032 0.968 40 H 0.258 0.742 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.432 -14.395 11.659 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.243 6.243 3 C 0.103 3.897 4 C -0.227 4.227 5 C -0.052 4.052 6 C -0.157 4.157 7 C -0.027 4.027 8 N -0.312 5.312 9 C -0.041 4.041 10 C 0.060 3.940 11 C -0.179 4.179 12 C -0.162 4.162 13 C -0.567 4.567 14 H 0.065 0.935 15 C -0.177 4.177 16 N -0.544 5.544 17 Si 0.773 3.227 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.103 3.897 22 F -0.124 7.124 23 C -0.221 4.221 24 H 0.138 0.862 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.183 0.817 28 H 0.174 0.826 29 H 0.046 0.954 30 H 0.112 0.888 31 H 0.152 0.848 32 H 0.076 0.924 33 H 0.025 0.975 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.871 -14.313 11.285 22.904 hybrid contribution 1.805 0.842 0.141 1.996 sum -12.066 -13.471 11.426 21.392 Atomic orbital electron populations 1.23442 0.75757 1.05903 1.02759 1.86051 1.23989 1.26109 1.88199 1.18686 0.91106 0.85346 0.94532 1.21582 1.01871 0.91012 1.08257 1.20978 0.92027 0.98843 0.93329 1.19860 0.95127 0.93357 1.07338 1.20773 0.98344 0.93423 0.90125 1.60673 1.45901 1.04484 1.20128 1.21873 0.94633 0.89766 0.97791 1.18132 0.92429 0.93037 0.90426 1.21677 0.97860 0.96409 1.01981 1.21453 0.96428 0.97228 1.01079 1.21416 1.37274 1.04140 0.93847 0.93514 1.25555 0.96600 1.00075 0.95494 1.69960 1.46868 1.38501 0.99028 0.85808 0.79020 0.81088 0.76821 1.20191 1.21109 1.19912 1.17404 0.76504 0.94057 1.01727 1.91478 1.29945 1.97196 1.93831 1.20289 0.93512 0.97143 1.11160 0.86154 0.90995 0.91436 0.81723 0.82600 0.95359 0.88766 0.84797 0.92377 0.97488 0.95365 0.92396 0.96664 0.96668 0.93339 0.94922 0.93295 0.83671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -6.11 10.50 -92.35 -0.97 -7.08 16 3 C 0.15 3.16 6.68 22.50 0.15 3.31 16 4 C -0.21 -3.75 9.04 22.37 0.20 -3.55 16 5 C -0.03 -0.70 9.66 22.25 0.21 -0.48 16 6 C -0.16 -4.14 5.40 -19.80 -0.11 -4.24 16 7 C 0.10 3.03 5.53 85.56 0.47 3.51 16 8 N -0.68 -24.84 5.70 -517.92 -2.95 -27.79 16 9 C 0.09 3.73 4.59 86.30 0.40 4.12 16 10 C 0.06 2.98 0.57 -52.93 -0.03 2.95 16 11 C -0.12 -5.98 7.92 71.98 0.57 -5.41 16 12 C -0.10 -5.15 8.09 71.98 0.58 -4.57 16 13 C -0.53 -28.93 8.01 25.60 0.21 -28.73 16 14 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 15 C 0.02 1.20 5.15 84.66 0.44 1.63 16 16 N -0.90 -51.29 9.35 21.45 0.20 -51.09 16 17 Si 0.95 43.75 29.54 68.60 2.03 45.77 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 21 C 0.12 3.43 7.24 22.36 0.16 3.60 16 22 F -0.15 -4.57 16.66 44.97 0.75 -3.82 16 23 C -0.20 -4.95 9.97 22.41 0.22 -4.73 16 24 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.07 0.46 7.66 -2.39 -0.02 0.45 16 26 H 0.07 0.52 7.66 -2.38 -0.02 0.50 16 27 H 0.17 1.83 6.30 -2.91 -0.02 1.81 16 28 H 0.16 2.63 8.03 -2.91 -0.02 2.60 16 29 H 0.03 0.88 7.94 -2.39 -0.02 0.86 16 30 H 0.09 2.50 8.00 -2.39 -0.02 2.49 16 31 H 0.33 12.76 6.76 -89.69 -0.61 12.16 16 32 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.03 1.25 6.57 -2.39 -0.02 1.23 16 35 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 36 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.05 2.64 6.07 -2.39 -0.01 2.63 16 39 H 0.03 1.48 7.60 -2.39 -0.02 1.47 16 40 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 41 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -62.19 334.21 4.07 -58.12 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.42 Total: 17.22 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: 4.59 Total: -31.34 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -2.75 Total: -78.88 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.97 Total: -7.08 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.75 Total: -3.82 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -62.19 4.07 -58.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573125350.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.431 kcal (2) G-P(sol) polarization free energy of solvation -62.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds