Wall clock time and date at job start Tue Mar 31 2020 05:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35943 * 117.00190 * 2 1 4 4 C 1.38725 * 120.03237 * 0.02705 * 3 2 1 5 5 C 1.38127 * 119.97192 * 179.97438 * 4 3 2 6 6 C 1.38476 * 120.02890 * 359.97252 * 5 4 3 7 7 F 1.35100 * 119.97088 * 180.02562 * 6 5 4 8 8 C 1.38434 * 120.06292 * 359.79304 * 6 5 4 9 9 C 1.38179 * 120.02393 * 0.46426 * 8 6 5 10 10 C 1.50699 * 120.01145 * 179.79124 * 9 8 6 11 11 N 1.46904 * 109.47194 * 253.05558 * 10 9 8 12 12 C 1.46904 * 110.99752 * 200.09881 * 11 10 9 13 13 C 1.50704 * 109.46653 * 162.68004 * 12 11 10 14 14 H 1.07998 * 119.99948 * 357.21913 * 13 12 11 15 15 C 1.37871 * 119.99600 * 177.21478 * 13 12 11 16 16 N 1.31514 * 120.00562 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99953 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47321 * 89.99971 * 17 15 13 19 19 H 1.48504 * 109.47377 * 210.00257 * 17 15 13 20 20 H 1.48504 * 109.47080 * 330.00061 * 17 15 13 21 21 C 1.46890 * 111.00075 * 76.14277 * 11 10 9 22 22 C 1.53003 * 109.47256 * 71.22688 * 21 11 10 23 23 C 1.52999 * 109.47321 * 191.22303 * 21 11 10 24 24 H 1.09001 * 109.46746 * 300.00287 * 1 2 3 25 25 H 1.08997 * 109.46894 * 59.99306 * 1 2 3 26 26 H 1.08993 * 109.47311 * 180.02562 * 1 2 3 27 27 H 1.08006 * 120.01369 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.98677 * 179.97438 * 5 4 3 29 29 H 1.08000 * 119.98853 * 180.23300 * 8 6 5 30 30 H 1.09004 * 109.47074 * 133.05500 * 10 9 8 31 31 H 1.09000 * 109.47272 * 13.05764 * 10 9 8 32 32 H 1.08993 * 109.46959 * 282.67869 * 12 11 10 33 33 H 1.08995 * 109.47072 * 42.68445 * 12 11 10 34 34 H 0.96995 * 120.00579 * 179.97438 * 16 15 13 35 35 H 1.08996 * 109.47403 * 311.22633 * 21 11 10 36 36 H 1.08999 * 109.47163 * 67.70765 * 22 21 11 37 37 H 1.08997 * 109.47297 * 187.71162 * 22 21 11 38 38 H 1.09006 * 109.46542 * 307.70275 * 22 21 11 39 39 H 1.09005 * 109.46822 * 51.70168 * 23 21 11 40 40 H 1.09000 * 109.47325 * 171.69318 * 23 21 11 41 41 H 1.08997 * 109.47091 * 291.70065 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2914 2.3751 0.0006 5 6 1.9198 3.6052 0.0011 6 6 3.3027 3.6768 0.0016 7 9 3.9161 4.8805 0.0027 8 6 4.0573 2.5162 0.0060 9 6 3.4311 1.2845 0.0001 10 6 4.2529 0.0212 0.0001 11 7 4.1870 -0.6058 -1.3268 12 6 4.5502 -2.0275 -1.2559 13 6 4.0751 -2.7300 -2.5016 14 1 3.5162 -2.1859 -3.2485 15 6 4.3540 -4.0673 -2.6877 16 7 5.0343 -4.7300 -1.7779 17 14 3.7658 -4.9381 -4.2321 18 1 4.8046 -4.8297 -5.2877 19 1 3.5162 -6.3702 -3.9284 20 1 2.5088 -4.3067 -4.7080 21 6 5.0374 0.1075 -2.2889 22 6 6.5088 -0.1541 -1.9610 23 6 4.7343 -0.3894 -3.7039 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 0.2128 2.3195 0.0006 28 1 1.3324 4.5115 0.0011 29 1 5.1357 2.5735 0.0102 30 1 3.8598 -0.6680 0.7475 31 1 5.2892 0.2618 0.2371 32 1 5.6330 -2.1222 -1.1759 33 1 4.0803 -2.4793 -0.3823 34 1 5.2302 -5.6710 -1.9086 35 1 4.8363 1.1770 -2.2286 36 1 6.7434 -1.2010 -2.1535 37 1 7.1384 0.4801 -2.5849 38 1 6.6927 0.0724 -0.9107 39 1 3.6604 -0.3395 -3.8842 40 1 5.2538 0.2379 -4.4284 41 1 5.0726 -1.4204 -3.8072 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580019934.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:25 Heat of formation + Delta-G solvation = -45.699020 kcal Electronic energy + Delta-G solvation = -22918.458474 eV Core-core repulsion = 19520.775212 eV Total energy + Delta-G solvation = -3397.683262 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.69537 -40.06137 -37.78479 -36.80197 -32.78594 -32.18806 -30.25107 -29.43897 -27.62033 -26.95393 -26.19034 -24.63056 -22.25548 -22.02522 -21.36888 -18.67666 -17.77514 -16.92494 -16.76095 -16.21373 -15.72931 -15.22225 -15.01813 -14.59849 -14.57247 -14.35605 -13.95944 -13.42714 -13.15982 -13.06855 -12.69959 -12.18784 -12.13299 -12.05875 -11.67165 -11.42147 -11.25677 -11.07194 -10.81888 -10.76768 -10.68674 -10.61151 -10.48430 -10.24877 -10.09033 -9.34133 -8.97010 -8.86568 -8.32300 -7.83199 -7.09353 -5.95303 -3.91490 1.26511 1.39024 3.34136 3.41074 3.44889 3.51474 3.69518 4.39470 4.48413 4.73547 4.80725 5.11939 5.14301 5.22370 5.30134 5.38748 5.43605 5.64939 5.70503 5.72719 5.85080 5.91287 5.94521 6.12961 6.19761 6.23240 6.29752 6.40326 6.50803 6.65206 6.68043 6.80746 6.86782 7.04096 7.32294 7.48495 7.54828 7.61254 7.92324 8.21981 8.32302 8.65190 9.13433 9.67976 11.15292 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.005324 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.724547 B = 5258.419892 C = 5989.135634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.284 6.284 3 C 0.147 3.853 4 C -0.191 4.191 5 C -0.121 4.121 6 C 0.050 3.950 7 F -0.148 7.148 8 C -0.113 4.113 9 C -0.067 4.067 10 C 0.095 3.905 11 N -0.518 5.518 12 C 0.188 3.812 13 C -0.495 4.495 14 H 0.073 0.927 15 C 0.052 3.948 16 N -0.901 5.901 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.274 1.274 21 C 0.091 3.909 22 C -0.183 4.183 23 C -0.144 4.144 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.100 0.900 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.005 0.995 33 H 0.024 0.976 34 H 0.259 0.741 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.026 0.974 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.792 13.677 4.156 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.195 6.195 3 C 0.100 3.900 4 C -0.209 4.209 5 C -0.140 4.140 6 C 0.031 3.969 7 F -0.126 7.126 8 C -0.132 4.132 9 C -0.068 4.068 10 C -0.033 4.033 11 N -0.242 5.242 12 C 0.063 3.937 13 C -0.534 4.534 14 H 0.091 0.909 15 C -0.149 4.149 16 N -0.542 5.542 17 Si 0.718 3.282 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.199 1.199 21 C -0.018 4.018 22 C -0.242 4.242 23 C -0.201 4.201 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.119 0.881 27 H 0.151 0.849 28 H 0.149 0.851 29 H 0.154 0.846 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.023 0.977 33 H 0.042 0.958 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.114 13.336 4.026 15.213 hybrid contribution 0.375 -0.175 -0.515 0.660 sum -5.740 13.160 3.511 14.781 Atomic orbital electron populations 1.23052 0.79193 1.04103 1.00486 1.86347 1.20362 1.25421 1.87414 1.18845 0.91756 0.84499 0.94870 1.21045 1.00170 0.91468 1.08267 1.20772 0.92563 0.98421 1.02260 1.17471 0.90818 0.80350 1.08263 1.91453 1.83419 1.43187 1.94581 1.20878 1.00414 0.90208 1.01728 1.19248 0.91069 0.95233 1.01282 1.20901 0.95871 0.92199 0.94317 1.62329 1.52951 1.04915 1.03990 1.19857 0.95084 0.80921 0.97835 1.21411 1.33382 0.93897 1.04661 0.90881 1.24968 0.95808 0.97499 0.96594 1.69956 1.40578 1.09339 1.34277 0.86620 0.79174 0.78842 0.83530 1.20866 1.21470 1.19871 1.21429 0.89793 0.96430 0.94192 1.22458 0.98566 1.03146 1.00013 1.22203 1.00909 1.03455 0.93501 0.93320 0.92886 0.88128 0.84854 0.85124 0.84626 0.90016 0.94464 0.97714 0.95791 0.93169 0.92743 0.90793 0.93713 0.93777 0.92906 0.95486 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.28 -4.66 9.86 -19.56 -0.19 -4.86 16 3 C 0.15 2.29 6.66 -39.24 -0.26 2.03 16 4 C -0.19 -2.43 9.04 -39.44 -0.36 -2.79 16 5 C -0.12 -1.50 10.02 -39.53 -0.40 -1.90 16 6 C 0.05 0.70 7.30 -39.42 -0.29 0.41 16 7 F -0.15 -2.07 17.27 2.25 0.04 -2.03 16 8 C -0.11 -1.64 9.07 -39.53 -0.36 -2.00 16 9 C -0.07 -1.08 4.81 -104.48 -0.50 -1.58 16 10 C 0.10 1.73 4.62 -4.97 -0.02 1.71 16 11 N -0.52 -10.89 4.40 -229.52 -1.01 -11.90 16 12 C 0.19 4.70 4.48 -4.97 -0.02 4.68 16 13 C -0.49 -13.28 6.69 -34.44 -0.23 -13.51 16 14 H 0.07 1.95 5.48 -52.49 -0.29 1.66 16 15 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 16 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 17 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.09 1.75 2.82 -67.72 -0.19 1.56 16 22 C -0.18 -3.36 8.31 37.16 0.31 -3.05 16 23 C -0.14 -2.87 7.71 37.16 0.29 -2.58 16 24 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 25 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 26 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.13 1.34 6.30 -52.48 -0.33 1.01 16 28 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.14 1.81 7.99 -52.49 -0.42 1.39 16 30 H 0.08 1.55 7.53 -51.93 -0.39 1.16 16 31 H 0.04 0.64 5.95 -51.93 -0.31 0.33 16 32 H 0.01 0.14 5.63 -51.93 -0.29 -0.16 16 33 H 0.02 0.66 7.65 -51.93 -0.40 0.26 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.05 1.00 6.96 -51.93 -0.36 0.63 16 36 H 0.07 1.56 6.46 -51.93 -0.34 1.22 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.04 0.76 6.31 -51.93 -0.33 0.43 16 39 H 0.05 1.09 7.53 -51.93 -0.39 0.70 16 40 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 2.15 5.49 -51.93 -0.28 1.87 16 LS Contribution 327.85 15.07 4.94 4.94 Total: -1.00 -29.51 327.85 -7.40 -36.91 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.75 Total: 0.52 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -1.14 Total: -14.39 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.27 Total: -37.41 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.19 Total: -4.86 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.51 -7.40 -36.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580019934.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.790 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds