Wall clock time and date at job start Tue Mar 31 2020 05:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35943 * 117.00190 * 2 1 4 4 C 1.38725 * 120.03237 * 0.02705 * 3 2 1 5 5 C 1.38127 * 119.97192 * 179.97438 * 4 3 2 6 6 C 1.38476 * 120.02890 * 359.97252 * 5 4 3 7 7 F 1.35100 * 119.97088 * 180.02562 * 6 5 4 8 8 C 1.38434 * 120.06292 * 359.79304 * 6 5 4 9 9 C 1.38179 * 120.02393 * 0.46426 * 8 6 5 10 10 C 1.50699 * 120.01145 * 179.79124 * 9 8 6 11 11 N 1.46904 * 109.47194 * 253.05558 * 10 9 8 12 12 C 1.46904 * 110.99752 * 200.09881 * 11 10 9 13 13 C 1.50704 * 109.46653 * 162.68004 * 12 11 10 14 14 H 1.07998 * 119.99948 * 357.21913 * 13 12 11 15 15 C 1.37871 * 119.99600 * 177.21478 * 13 12 11 16 16 N 1.31514 * 120.00562 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99953 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47321 * 89.99971 * 17 15 13 19 19 H 1.48504 * 109.47377 * 210.00257 * 17 15 13 20 20 H 1.48504 * 109.47080 * 330.00061 * 17 15 13 21 21 C 1.46890 * 111.00075 * 76.14277 * 11 10 9 22 22 C 1.53003 * 109.47256 * 71.22688 * 21 11 10 23 23 C 1.52999 * 109.47321 * 191.22303 * 21 11 10 24 24 H 1.09001 * 109.46746 * 300.00287 * 1 2 3 25 25 H 1.08997 * 109.46894 * 59.99306 * 1 2 3 26 26 H 1.08993 * 109.47311 * 180.02562 * 1 2 3 27 27 H 1.08006 * 120.01369 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.98677 * 179.97438 * 5 4 3 29 29 H 1.08000 * 119.98853 * 180.23300 * 8 6 5 30 30 H 1.09004 * 109.47074 * 133.05500 * 10 9 8 31 31 H 1.09000 * 109.47272 * 13.05764 * 10 9 8 32 32 H 1.08993 * 109.46959 * 282.67869 * 12 11 10 33 33 H 1.08995 * 109.47072 * 42.68445 * 12 11 10 34 34 H 0.96995 * 120.00579 * 179.97438 * 16 15 13 35 35 H 1.08996 * 109.47403 * 311.22633 * 21 11 10 36 36 H 1.08999 * 109.47163 * 67.70765 * 22 21 11 37 37 H 1.08997 * 109.47297 * 187.71162 * 22 21 11 38 38 H 1.09006 * 109.46542 * 307.70275 * 22 21 11 39 39 H 1.09005 * 109.46822 * 51.70168 * 23 21 11 40 40 H 1.09000 * 109.47325 * 171.69318 * 23 21 11 41 41 H 1.08997 * 109.47091 * 291.70065 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2914 2.3751 0.0006 5 6 1.9198 3.6052 0.0011 6 6 3.3027 3.6768 0.0016 7 9 3.9161 4.8805 0.0027 8 6 4.0573 2.5162 0.0060 9 6 3.4311 1.2845 0.0001 10 6 4.2529 0.0212 0.0001 11 7 4.1870 -0.6058 -1.3268 12 6 4.5502 -2.0275 -1.2559 13 6 4.0751 -2.7300 -2.5016 14 1 3.5162 -2.1859 -3.2485 15 6 4.3540 -4.0673 -2.6877 16 7 5.0343 -4.7300 -1.7779 17 14 3.7658 -4.9381 -4.2321 18 1 4.8046 -4.8297 -5.2877 19 1 3.5162 -6.3702 -3.9284 20 1 2.5088 -4.3067 -4.7080 21 6 5.0374 0.1075 -2.2889 22 6 6.5088 -0.1541 -1.9610 23 6 4.7343 -0.3894 -3.7039 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 0.2128 2.3195 0.0006 28 1 1.3324 4.5115 0.0011 29 1 5.1357 2.5735 0.0102 30 1 3.8598 -0.6680 0.7475 31 1 5.2892 0.2618 0.2371 32 1 5.6330 -2.1222 -1.1759 33 1 4.0803 -2.4793 -0.3823 34 1 5.2302 -5.6710 -1.9086 35 1 4.8363 1.1770 -2.2286 36 1 6.7434 -1.2010 -2.1535 37 1 7.1384 0.4801 -2.5849 38 1 6.6927 0.0724 -0.9107 39 1 3.6604 -0.3395 -3.8842 40 1 5.2538 0.2379 -4.4284 41 1 5.0726 -1.4204 -3.8072 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580019934.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:24 Heat of formation + Delta-G solvation = -63.212266 kcal Electronic energy + Delta-G solvation = -22919.217905 eV Core-core repulsion = 19520.775212 eV Total energy + Delta-G solvation = -3398.442693 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.75941 -41.19678 -39.31835 -37.97374 -34.71555 -33.63417 -31.71448 -30.59897 -29.34843 -28.00846 -27.77803 -26.15160 -24.05653 -23.20728 -22.58376 -20.27130 -18.89335 -18.47804 -17.87300 -17.83075 -16.95604 -16.51831 -16.50364 -16.24989 -15.67435 -15.55936 -15.42115 -14.92818 -14.68202 -14.21767 -14.07066 -13.72189 -13.51125 -13.30492 -13.06687 -12.99473 -12.81698 -12.61822 -12.56964 -12.49444 -12.26612 -12.00261 -11.83327 -11.73260 -11.66057 -11.16291 -10.88485 -10.45577 -9.98851 -8.94245 -8.80482 -8.07681 -6.10430 0.19800 0.30301 1.43495 1.44154 1.54943 2.45516 2.50644 2.61231 3.24012 3.28818 3.52748 3.71412 3.80883 4.12930 4.19992 4.23491 4.36280 4.45600 4.47980 4.48398 4.51025 4.63939 4.78449 4.80527 4.87935 4.95647 5.01698 5.05125 5.16461 5.17891 5.19083 5.29710 5.36836 5.45321 5.61443 5.78883 5.81571 5.82425 6.22401 6.54602 6.57529 6.78374 7.01661 7.53290 9.02693 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.005324 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.724547 B = 5258.419892 C = 5989.135634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.322 6.322 3 C 0.132 3.868 4 C -0.182 4.182 5 C -0.108 4.108 6 C 0.042 3.958 7 F -0.148 7.148 8 C -0.112 4.112 9 C -0.091 4.091 10 C 0.101 3.899 11 N -0.523 5.523 12 C 0.205 3.795 13 C -0.496 4.496 14 H 0.074 0.926 15 C -0.001 4.001 16 N -0.939 5.939 17 Si 0.954 3.046 18 H -0.275 1.275 19 H -0.288 1.288 20 H -0.266 1.266 21 C 0.089 3.911 22 C -0.174 4.174 23 C -0.137 4.137 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.164 0.836 28 H 0.163 0.837 29 H 0.143 0.857 30 H 0.061 0.939 31 H 0.044 0.956 32 H -0.015 1.015 33 H -0.010 1.010 34 H 0.259 0.741 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.042 0.958 40 H 0.056 0.944 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.079 15.995 3.292 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.234 6.234 3 C 0.086 3.914 4 C -0.200 4.200 5 C -0.127 4.127 6 C 0.023 3.977 7 F -0.127 7.127 8 C -0.132 4.132 9 C -0.092 4.092 10 C -0.027 4.027 11 N -0.247 5.247 12 C 0.079 3.921 13 C -0.534 4.534 14 H 0.092 0.908 15 C -0.198 4.198 16 N -0.581 5.581 17 Si 0.780 3.220 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.191 1.191 21 C -0.019 4.019 22 C -0.233 4.233 23 C -0.195 4.195 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.119 0.881 27 H 0.182 0.818 28 H 0.181 0.819 29 H 0.161 0.839 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.003 0.997 33 H 0.008 0.992 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.411 15.681 3.159 17.629 hybrid contribution 0.734 -0.799 -0.197 1.102 sum -6.677 14.882 2.963 16.578 Atomic orbital electron populations 1.23302 0.77024 1.04915 1.02319 1.86294 1.22890 1.26547 1.87693 1.19079 0.91804 0.85232 0.95329 1.21330 1.01543 0.90396 1.06749 1.21145 0.92133 0.99497 0.99931 1.17581 0.91516 0.80012 1.08634 1.91456 1.83566 1.43049 1.94623 1.20906 1.00960 0.89944 1.01367 1.19053 0.91508 0.94496 1.04160 1.20785 0.96709 0.92884 0.92275 1.62234 1.53438 1.03016 1.06005 1.19474 0.93256 0.83551 0.95798 1.21672 1.32637 0.94165 1.04938 0.90844 1.25765 0.96068 0.98377 0.99560 1.70090 1.42122 1.09563 1.36291 0.85600 0.78956 0.77465 0.79936 1.20099 1.21410 1.19067 1.21506 0.90022 0.97052 0.93345 1.22338 0.98399 1.01453 1.01063 1.22071 1.00450 1.02189 0.94759 0.90727 0.91615 0.88058 0.81846 0.81937 0.83897 0.92065 0.93772 0.99729 0.99204 0.93247 0.90782 0.94166 0.90989 0.93099 0.93870 0.92555 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.52 16 2 O -0.32 -10.50 9.86 -92.91 -0.92 -11.41 16 3 C 0.13 3.95 6.66 22.49 0.15 4.10 16 4 C -0.18 -4.06 9.04 22.36 0.20 -3.86 16 5 C -0.11 -2.29 10.02 22.30 0.22 -2.06 16 6 C 0.04 1.05 7.30 22.37 0.16 1.21 16 7 F -0.15 -3.75 17.27 44.97 0.78 -2.97 16 8 C -0.11 -3.09 9.07 22.30 0.20 -2.89 16 9 C -0.09 -2.88 4.81 -19.77 -0.10 -2.98 16 10 C 0.10 3.78 4.62 85.56 0.40 4.18 16 11 N -0.52 -22.47 4.40 -880.07 -3.87 -26.34 16 12 C 0.21 10.76 4.48 85.56 0.38 11.14 16 13 C -0.50 -27.34 6.69 25.60 0.17 -27.16 16 14 H 0.07 3.98 5.48 -2.91 -0.02 3.96 16 15 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 16 N -0.94 -56.48 13.29 21.44 0.28 -56.19 16 17 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 C 0.09 3.40 2.82 44.92 0.13 3.53 16 22 C -0.17 -6.31 8.31 71.98 0.60 -5.71 16 23 C -0.14 -5.39 7.71 71.98 0.56 -4.84 16 24 H 0.07 1.18 7.66 -2.39 -0.02 1.16 16 25 H 0.07 1.22 7.66 -2.39 -0.02 1.20 16 26 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.16 2.59 6.30 -2.91 -0.02 2.57 16 28 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 29 H 0.14 3.59 7.99 -2.91 -0.02 3.57 16 30 H 0.06 2.48 7.53 -2.38 -0.02 2.46 16 31 H 0.04 1.55 5.95 -2.39 -0.01 1.53 16 32 H -0.01 -0.83 5.63 -2.39 -0.01 -0.85 16 33 H -0.01 -0.59 7.65 -2.39 -0.02 -0.61 16 34 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 35 H 0.07 2.57 6.96 -2.39 -0.02 2.55 16 36 H 0.04 1.73 6.46 -2.39 -0.02 1.71 16 37 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.05 1.74 6.31 -2.38 -0.02 1.73 16 39 H 0.04 1.74 7.53 -2.38 -0.02 1.72 16 40 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.06 2.93 5.49 -2.39 -0.01 2.92 16 Total: -1.00 -65.32 327.85 3.98 -61.33 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 1.03 Total: 12.59 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 4.65 Total: -23.43 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -3.59 Total: -82.53 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.92 Total: -11.41 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.78 Total: -2.97 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -65.32 3.98 -61.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580019934.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.880 kcal (2) G-P(sol) polarization free energy of solvation -65.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds