Wall clock time and date at job start Tue Mar 31 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99910 * 2 1 4 4 C 1.39567 * 120.00193 * 179.97438 * 2 1 3 5 5 N 1.31143 * 125.53311 * 179.69536 * 4 2 1 6 6 N 1.40418 * 106.92740 * 179.91715 * 5 4 2 7 7 H 0.96996 * 126.77261 * 180.10288 * 6 5 4 8 8 C 1.34864 * 106.45549 * 0.34114 * 6 5 4 9 9 N 1.38773 * 125.99193 * 179.77343 * 8 6 5 10 10 C 1.34768 * 120.00463 * 0.02562 * 9 8 6 11 11 O 1.21278 * 120.00009 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.00389 * 180.02562 * 10 9 8 13 13 C 1.52998 * 109.47499 * 179.97438 * 12 10 9 14 14 C 1.52991 * 109.47351 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47351 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47499 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99801 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00281 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00238 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00111 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46904 * 60.00301 * 20 18 16 22 22 H 1.48495 * 109.46914 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46786 * 299.99866 * 20 18 16 24 24 N 1.31538 * 108.00782 * 359.79367 * 8 6 5 25 25 H 1.09002 * 109.47391 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46813 * 240.00026 * 1 2 3 27 27 H 1.09004 * 109.47041 * 120.00153 * 1 2 3 28 28 H 1.08999 * 109.47096 * 89.99783 * 3 2 1 29 29 H 1.09001 * 109.46763 * 210.00177 * 3 2 1 30 30 H 1.09005 * 109.46576 * 330.00159 * 3 2 1 31 31 H 0.97010 * 119.99333 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.47116 * 300.00352 * 12 10 9 33 33 H 1.09004 * 109.47114 * 59.99655 * 12 10 9 34 34 H 1.09000 * 109.46949 * 299.99867 * 13 12 10 35 35 H 1.08995 * 109.47014 * 59.99912 * 13 12 10 36 36 H 1.09001 * 109.47266 * 299.99501 * 14 13 12 37 37 H 1.09004 * 109.47388 * 59.99627 * 14 13 12 38 38 H 1.09000 * 109.46949 * 299.99623 * 15 14 13 39 39 H 1.09004 * 109.47180 * 59.99499 * 15 14 13 40 40 H 0.96999 * 120.00127 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1629 -1.2087 0.0005 5 7 3.4682 -1.3351 -0.0051 6 7 3.7456 -2.7116 -0.0001 7 1 4.6220 -3.1272 -0.0010 8 6 2.5532 -3.3416 0.0007 9 7 2.3568 -4.7154 0.0007 10 6 3.4166 -5.5478 0.0003 11 8 4.5423 -5.0963 -0.0005 12 6 3.2033 -7.0396 -0.0003 13 6 4.5589 -7.7488 -0.0013 14 6 4.3423 -9.2633 -0.0026 15 6 5.6980 -9.9725 -0.0042 16 6 5.4846 -11.4643 -0.0048 17 1 4.4822 -11.8664 -0.0037 18 6 6.5689 -12.3158 -0.0068 19 7 7.7895 -11.8263 -0.0087 20 14 6.3043 -14.1651 -0.0083 21 1 5.5400 -14.5547 -1.2204 22 1 7.6202 -14.8533 -0.0098 23 1 5.5426 -14.5570 1.2046 24 7 1.6093 -2.4256 0.0011 25 1 -0.3634 1.0277 0.0005 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 -0.5139 -0.8900 28 1 2.3791 1.5835 1.0277 29 1 3.1499 1.1384 -0.5139 30 1 1.6083 2.0284 -0.5138 31 1 1.4564 -5.0765 0.0009 32 1 2.6431 -7.3269 0.8895 33 1 2.6431 -7.3261 -0.8904 34 1 5.1186 -7.4615 -0.8915 35 1 5.1195 -7.4623 0.8885 36 1 3.7825 -9.5510 0.8873 37 1 3.7819 -9.5495 -0.8927 38 1 6.2574 -9.6848 -0.8944 39 1 6.2588 -9.6864 0.8856 40 1 8.5524 -12.4254 -0.0097 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588763912.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:18 Heat of formation + Delta-G solvation = 51.909233 kcal Electronic energy + Delta-G solvation = -20804.293212 eV Core-core repulsion = 17463.055274 eV Total energy + Delta-G solvation = -3341.237938 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.31820 -40.20536 -36.94256 -35.33897 -35.07897 -32.76106 -32.24456 -30.66325 -29.57293 -28.25171 -25.99675 -25.35886 -23.50923 -21.82042 -21.27238 -20.15934 -20.12896 -18.34464 -17.38440 -16.89604 -16.59388 -16.21448 -16.03378 -15.81122 -14.76832 -14.75556 -14.54172 -14.31094 -14.10035 -12.86495 -12.77387 -12.72097 -12.51879 -12.25582 -12.13393 -11.87013 -11.73569 -11.58320 -11.05528 -10.70326 -10.67352 -10.61368 -10.53821 -10.50284 -10.10476 -9.71062 -9.33603 -9.30235 -9.07385 -8.34879 -8.03230 -5.99666 -4.02624 1.35194 1.92005 2.25150 2.25873 3.00525 3.30090 3.32509 3.37337 3.39184 4.33592 4.44482 4.46233 4.69997 5.02483 5.05438 5.09649 5.11155 5.20298 5.35771 5.38760 5.45637 5.51098 5.58923 5.70816 5.96012 6.09274 6.12275 6.37360 6.40280 6.69284 6.83399 6.88359 7.10400 7.15442 7.21410 7.50539 7.67627 7.82106 8.00450 8.11327 8.41903 9.04692 9.61404 11.11508 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.069361 B = 0.002182 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.586732 B =12827.780549 C =13189.709143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.599 5.599 3 C 0.110 3.890 4 C 0.491 3.509 5 N -0.365 5.365 6 N -0.470 5.470 7 H 0.452 0.548 8 C 0.525 3.475 9 N -0.633 5.633 10 C 0.525 3.475 11 O -0.517 6.517 12 C -0.132 4.132 13 C -0.106 4.106 14 C -0.111 4.111 15 C 0.020 3.980 16 C -0.522 4.522 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 N -0.589 5.589 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.434 0.566 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.065 22.583 -0.084 27.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.325 5.325 3 C -0.033 4.033 4 C 0.121 3.879 5 N -0.207 5.207 6 N -0.200 5.200 7 H 0.306 0.694 8 C 0.158 3.842 9 N -0.287 5.287 10 C 0.314 3.686 11 O -0.389 6.389 12 C -0.171 4.171 13 C -0.144 4.144 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.561 4.561 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 N -0.332 5.332 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.274 0.726 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.974 23.397 -0.090 27.779 hybrid contribution -0.089 -1.650 0.019 1.653 sum -15.063 21.747 -0.071 26.454 Atomic orbital electron populations 1.21492 0.77526 1.01801 1.01914 1.45160 1.04893 0.99921 1.82560 1.21591 0.97153 0.83186 1.01361 1.19942 0.86956 0.86285 0.94701 1.78197 1.12903 0.91425 1.38184 1.48125 1.08952 1.03304 1.59618 0.69418 1.20060 0.83756 0.85827 0.94561 1.43001 1.12837 0.99961 1.72950 1.21767 0.83090 0.90423 0.73303 1.90553 1.23413 1.77572 1.47367 1.21865 1.03227 0.86685 1.05357 1.21534 0.93015 0.96537 1.03355 1.21655 1.01380 0.91425 1.00364 1.19091 0.90794 0.94471 0.97359 1.21224 0.92456 0.91649 1.50749 0.92756 1.25043 0.95278 0.98853 0.95383 1.69957 0.97786 1.34977 1.50682 0.86660 0.77249 0.85521 0.78564 1.20266 1.21312 1.20271 1.70185 1.30224 0.97257 1.35503 0.90793 0.92646 0.92640 0.93370 0.90967 0.91193 0.72599 0.87743 0.87744 0.91440 0.91437 0.93219 0.93221 0.96558 0.96565 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.83 10.50 59.85 0.63 1.46 16 2 N -0.60 -6.05 3.41 -191.52 -0.65 -6.71 16 3 C 0.11 0.81 10.55 59.85 0.63 1.44 16 4 C 0.49 6.56 8.36 -321.25 -2.68 3.87 16 5 N -0.37 -5.26 12.11 29.98 0.36 -4.89 16 6 N -0.47 -6.53 7.04 30.09 0.21 -6.32 16 7 H 0.45 6.24 6.47 -182.36 -1.18 5.06 16 8 C 0.53 6.69 8.83 -320.37 -2.83 3.86 16 9 N -0.63 -6.10 5.39 -12.75 -0.07 -6.17 16 10 C 0.52 5.97 7.79 -10.99 -0.09 5.88 16 11 O -0.52 -7.59 13.51 5.56 0.08 -7.51 16 12 C -0.13 -1.36 5.70 -27.88 -0.16 -1.52 16 13 C -0.11 -1.64 4.50 -26.74 -0.12 -1.76 16 14 C -0.11 -2.08 5.15 -26.74 -0.14 -2.22 16 15 C 0.02 0.50 4.97 -27.88 -0.14 0.37 16 16 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 17 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 20 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 N -0.59 -7.76 10.87 -14.29 -0.16 -7.92 16 25 H 0.07 0.32 7.79 -51.93 -0.40 -0.09 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.61 7.66 -51.93 -0.40 0.21 16 30 H 0.07 0.33 7.92 -51.93 -0.41 -0.09 16 31 H 0.43 2.72 8.82 -40.82 -0.36 2.36 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 35 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 341.59 15.07 5.15 5.15 Total: -1.00 -34.56 341.59 -11.61 -46.17 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.94 Total: -0.02 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -5.31 Total: -2.03 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 0.43 Total: -58.24 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.08 Total: -7.51 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.56 -11.61 -46.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588763912.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.080 kcal (2) G-P(sol) polarization free energy of solvation -34.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds