Wall clock time and date at job start Tue Mar 31 2020 05:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35963 * 116.99951 * 2 1 4 4 C 1.38655 * 120.06127 * 359.97098 * 3 2 1 5 5 C 1.38180 * 119.96918 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.09377 * 359.74834 * 5 4 3 7 7 C 1.38255 * 120.12768 * 0.50895 * 6 5 4 8 8 C 1.50697 * 119.98817 * 179.76641 * 7 6 5 9 9 N 1.46905 * 109.47066 * 259.72482 * 8 7 6 10 10 C 1.46901 * 110.99870 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46923 * 299.99733 * 11 10 9 13 13 C 1.52999 * 109.46998 * 59.99872 * 11 10 9 14 14 C 1.50703 * 109.46807 * 179.97438 * 11 10 9 15 15 H 1.07995 * 120.00107 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99714 * 179.97438 * 14 11 10 17 17 N 1.31510 * 119.99944 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99765 * 179.97438 * 16 14 11 19 19 H 1.48494 * 109.47051 * 60.00574 * 18 16 14 20 20 H 1.48501 * 109.46677 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47226 * 299.99990 * 18 16 14 22 22 C 1.38331 * 120.02626 * 359.49120 * 7 6 5 23 23 F 1.35103 * 120.04648 * 180.23545 * 22 7 6 24 24 H 1.08998 * 109.47176 * 300.00544 * 1 2 3 25 25 H 1.08999 * 109.46841 * 60.00688 * 1 2 3 26 26 H 1.09001 * 109.46552 * 179.97438 * 1 2 3 27 27 H 1.08004 * 120.01702 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.95235 * 180.02562 * 5 4 3 29 29 H 1.07996 * 119.93708 * 180.27523 * 6 5 4 30 30 H 1.09001 * 109.47558 * 139.72646 * 8 7 6 31 31 H 1.08998 * 109.47216 * 19.72308 * 8 7 6 32 32 H 1.00901 * 110.99869 * 56.04737 * 9 8 7 33 33 H 1.09004 * 109.47031 * 299.99620 * 10 9 8 34 34 H 1.08995 * 109.47111 * 59.99900 * 10 9 8 35 35 H 1.09002 * 109.47301 * 60.00027 * 12 11 10 36 36 H 1.09001 * 109.47017 * 180.02562 * 12 11 10 37 37 H 1.09005 * 109.47249 * 300.00302 * 12 11 10 38 38 H 1.09001 * 109.46999 * 60.00126 * 13 11 10 39 39 H 1.09001 * 109.46478 * 179.97438 * 13 11 10 40 40 H 1.08993 * 109.47197 * 299.99817 * 13 11 10 41 41 H 0.97007 * 120.00038 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3751 -0.0006 5 6 1.9216 3.6053 -0.0011 6 6 3.3023 3.6777 0.0042 7 6 4.0580 2.5199 -0.0006 8 6 5.5627 2.6026 -0.0001 9 7 6.0653 2.3884 -1.3637 10 6 7.5320 2.4615 -1.4017 11 6 8.0169 2.2347 -2.8350 12 6 7.5625 0.8548 -3.3148 13 6 7.4287 3.3117 -3.7488 14 6 9.5216 2.3103 -2.8741 15 1 10.0763 2.5015 -1.9674 16 6 10.1898 2.1355 -4.0673 17 7 9.5142 1.9033 -5.1714 18 14 12.0548 2.2299 -4.1159 19 1 12.6265 1.1858 -3.2282 20 1 12.5254 2.0097 -5.5070 21 1 12.4948 3.5699 -3.6512 22 6 3.4334 1.2857 0.0000 23 9 4.1714 0.1541 0.0001 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 0.2137 2.3200 -0.0007 28 1 1.3341 4.5115 -0.0012 29 1 3.7915 4.6405 0.0082 30 1 5.9684 1.8369 0.6611 31 1 5.8724 3.5869 0.3509 32 1 5.6533 3.0463 -2.0084 33 1 7.8557 3.4448 -1.0603 34 1 7.9510 1.6946 -0.7503 35 1 6.4742 0.8005 -3.2866 36 1 7.9084 0.6930 -4.3357 37 1 7.9815 0.0875 -2.6637 38 1 7.7525 4.2948 -3.4070 39 1 7.7746 3.1503 -4.7698 40 1 6.3405 3.2574 -3.7206 41 1 9.9843 1.7806 -6.0111 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590970453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:42 Heat of formation + Delta-G solvation = -60.266754 kcal Electronic energy + Delta-G solvation = -22112.277115 eV Core-core repulsion = 18713.962149 eV Total energy + Delta-G solvation = -3398.314966 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.51358 -40.08445 -37.98736 -36.67659 -34.07294 -31.57454 -30.36139 -29.91067 -27.54350 -25.65755 -25.50347 -25.12370 -23.09456 -22.60077 -21.20770 -18.48115 -18.07778 -17.05880 -16.96027 -16.20128 -15.88257 -15.27051 -14.99824 -14.74374 -14.61552 -14.37017 -13.96625 -13.77416 -13.14946 -12.76358 -12.55562 -12.30165 -12.28749 -12.07272 -11.71543 -11.55886 -11.27157 -11.11444 -11.01400 -10.92707 -10.60525 -10.55472 -10.13322 -10.01324 -9.33316 -9.10835 -8.79354 -8.57819 -8.25351 -8.24553 -7.68744 -5.87003 -3.97538 1.06147 1.19729 2.99458 3.35605 3.40245 3.42798 3.48339 4.26549 4.46976 4.57295 4.67359 4.84693 4.90156 5.01246 5.10428 5.15662 5.22454 5.25468 5.38202 5.63440 5.88483 5.91850 6.04271 6.17499 6.30157 6.38631 6.42906 6.57506 6.75995 6.92942 7.12393 7.17991 7.21580 7.45031 7.52339 7.74144 7.80308 7.87585 7.98870 8.25846 8.39402 8.60013 9.03683 9.67146 11.13445 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032622 B = 0.003540 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.098871 B = 7906.951731 C = 8174.215476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.088 3.912 4 C -0.187 4.187 5 C -0.094 4.094 6 C -0.124 4.124 7 C -0.074 4.074 8 C 0.096 3.904 9 N -0.679 5.679 10 C 0.076 3.924 11 C 0.069 3.931 12 C -0.119 4.119 13 C -0.132 4.132 14 C -0.507 4.507 15 H 0.051 0.949 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.279 1.279 22 C 0.097 3.903 23 F -0.121 7.121 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.101 0.899 27 H 0.134 0.866 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.339 0.661 33 H 0.014 0.986 34 H 0.058 0.942 35 H 0.020 0.980 36 H 0.073 0.927 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.083 0.917 40 H 0.010 0.990 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.482 2.207 10.524 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.223 6.223 3 C 0.042 3.958 4 C -0.206 4.206 5 C -0.113 4.113 6 C -0.143 4.143 7 C -0.075 4.075 8 C -0.033 4.033 9 N -0.311 5.311 10 C -0.052 4.052 11 C 0.069 3.931 12 C -0.177 4.177 13 C -0.190 4.190 14 C -0.546 4.546 15 H 0.070 0.930 16 C -0.136 4.136 17 N -0.523 5.523 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.205 1.205 22 C 0.076 3.924 23 F -0.099 7.099 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.119 0.881 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.158 0.842 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.039 0.961 36 H 0.092 0.908 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.102 0.898 40 H 0.029 0.971 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.326 1.240 10.373 21.094 hybrid contribution 1.005 0.965 0.061 1.395 sum -17.321 2.205 10.434 20.341 Atomic orbital electron populations 1.23079 0.78263 1.04094 1.01284 1.86156 1.21425 1.25906 1.88862 1.19026 0.90854 0.85556 1.00395 1.21064 0.99979 0.91606 1.07963 1.20910 0.94454 0.97054 0.98845 1.20910 0.93551 0.97664 1.02168 1.19893 0.97066 0.90901 0.99662 1.20821 0.88275 1.00420 0.93787 1.60632 1.08836 1.57256 1.04361 1.22187 0.84006 0.97876 1.01145 1.18088 0.94094 0.92977 0.87964 1.21634 0.96643 0.96911 1.02469 1.21831 0.95402 0.97350 1.04381 1.21077 0.91003 1.48592 0.93951 0.93035 1.24883 0.97820 0.95120 0.95736 1.69830 1.34648 1.49045 0.98796 0.86716 0.86268 0.78416 0.76874 1.20392 1.21387 1.20505 1.16772 0.85493 0.83066 1.07048 1.91534 1.76320 1.48358 1.93732 0.92659 0.92519 0.88102 0.84858 0.85263 0.85059 0.90135 0.94282 0.84201 0.96747 0.92380 0.96081 0.90796 0.96276 0.96240 0.89823 0.97070 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -4.01 10.36 -19.62 -0.20 -4.22 16 3 C 0.09 1.18 6.69 -39.18 -0.26 0.91 16 4 C -0.19 -1.95 9.04 -39.45 -0.36 -2.30 16 5 C -0.09 -0.93 10.04 -39.59 -0.40 -1.33 16 6 C -0.12 -1.43 9.66 -39.57 -0.38 -1.81 16 7 C -0.07 -1.05 5.40 -104.58 -0.56 -1.62 16 8 C 0.10 1.49 5.53 -4.97 -0.03 1.46 16 9 N -0.68 -12.69 5.70 -115.05 -0.66 -13.34 16 10 C 0.08 1.62 4.59 -3.82 -0.02 1.60 16 11 C 0.07 1.72 0.57 -155.66 -0.09 1.63 16 12 C -0.12 -3.02 8.09 37.16 0.30 -2.72 16 13 C -0.13 -3.16 7.92 37.16 0.29 -2.87 16 14 C -0.51 -13.89 8.01 -34.44 -0.28 -14.17 16 15 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 16 C 0.07 1.80 5.15 -17.82 -0.09 1.70 16 17 N -0.88 -24.87 9.35 55.43 0.52 -24.35 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.10 1.51 7.25 -39.30 -0.29 1.22 16 23 F -0.12 -2.19 16.51 2.25 0.04 -2.16 16 24 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 25 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.13 0.99 6.30 -52.48 -0.33 0.66 16 28 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 29 H 0.13 1.27 8.03 -52.49 -0.42 0.85 16 30 H 0.08 1.29 7.94 -51.93 -0.41 0.88 16 31 H 0.04 0.55 8.00 -51.93 -0.42 0.13 16 32 H 0.34 6.22 6.76 -39.29 -0.27 5.96 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.02 0.50 7.60 -51.93 -0.39 0.10 16 36 H 0.07 2.04 6.07 -51.93 -0.32 1.72 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 40 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 334.04 15.07 5.03 5.03 Total: -1.00 -30.12 334.04 -7.54 -37.66 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.09 Total: 2.07 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -1.16 Total: -17.07 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.14 Total: -37.69 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.20 Total: -4.22 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.12 -7.54 -37.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.604 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds