Wall clock time and date at job start Tue Mar 31 2020 05:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47062 * 2 1 4 4 H 1.08993 * 109.47494 * 54.90574 * 3 2 1 5 5 C 1.53002 * 109.46543 * 294.91128 * 3 2 1 6 6 C 1.50708 * 109.46896 * 175.00393 * 5 3 2 7 7 C 1.33387 * 125.20498 * 89.71474 * 6 5 3 8 8 C 1.38425 * 114.91999 * 179.85708 * 7 6 5 9 9 C 1.33385 * 114.91890 * 0.43469 * 8 7 6 10 10 S 1.75882 * 109.59708 * 359.76605 * 9 8 7 11 11 N 1.46897 * 109.47264 * 174.91034 * 3 2 1 12 12 C 1.46895 * 111.00047 * 273.83919 * 11 3 2 13 13 C 1.53011 * 109.46993 * 185.34507 * 12 11 3 14 14 C 1.52997 * 109.46640 * 299.99399 * 13 12 11 15 15 C 1.52999 * 109.47185 * 59.99836 * 13 12 11 16 16 C 1.50694 * 109.46752 * 179.97438 * 13 12 11 17 17 H 1.08004 * 120.00218 * 359.97438 * 16 13 12 18 18 C 1.37881 * 120.00078 * 180.02562 * 16 13 12 19 19 N 1.31518 * 119.99328 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00449 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47209 * 89.99524 * 20 18 16 22 22 H 1.48497 * 109.47277 * 209.99595 * 20 18 16 23 23 H 1.48504 * 109.46913 * 329.99798 * 20 18 16 24 24 H 1.08997 * 109.46963 * 305.83007 * 1 2 3 25 25 H 1.09000 * 109.46522 * 65.83193 * 1 2 3 26 26 H 1.09003 * 109.46937 * 185.82892 * 1 2 3 27 27 H 1.09008 * 109.46802 * 119.99494 * 2 1 3 28 28 H 1.08995 * 109.47582 * 239.99648 * 2 1 3 29 29 H 1.09000 * 109.47070 * 294.99975 * 5 3 2 30 30 H 1.08994 * 109.47704 * 55.00478 * 5 3 2 31 31 H 1.08002 * 122.54038 * 0.02562 * 7 6 5 32 32 H 1.07997 * 122.53794 * 180.20190 * 8 7 6 33 33 H 1.08004 * 125.20457 * 179.78740 * 9 8 7 34 34 H 1.00903 * 110.99827 * 37.79476 * 11 3 2 35 35 H 1.08999 * 109.47045 * 305.34009 * 12 11 3 36 36 H 1.08995 * 109.47621 * 65.34435 * 12 11 3 37 37 H 1.09005 * 109.47296 * 60.00710 * 14 13 12 38 38 H 1.09000 * 109.46798 * 180.02562 * 14 13 12 39 39 H 1.08998 * 109.47651 * 300.00318 * 14 13 12 40 40 H 1.08996 * 109.47258 * 59.99654 * 15 13 12 41 41 H 1.08998 * 109.46524 * 179.97438 * 15 13 12 42 42 H 1.08998 * 109.46837 * 299.99598 * 15 13 12 43 43 H 0.97001 * 119.99325 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9820 0.8408 5 6 1.6371 2.1257 -1.3084 6 6 2.0312 3.5795 -1.2579 7 6 3.2051 4.0723 -1.6559 8 6 3.3395 5.4430 -1.5171 9 6 2.2781 6.0621 -0.9981 10 16 1.0163 4.8849 -0.6583 11 7 3.5038 1.4444 0.1229 12 6 3.9139 1.3937 1.5325 13 6 5.4349 1.5314 1.6265 14 6 6.0989 0.3853 0.8608 15 6 5.8646 2.8678 1.0180 16 6 5.8554 1.4801 3.0727 17 1 5.1122 1.3616 3.8473 18 6 7.1889 1.5855 3.4070 19 7 8.0938 1.7303 2.4637 20 14 7.7102 1.5226 5.1997 21 1 7.9800 0.1147 5.5877 22 1 8.9412 2.3319 5.3859 23 1 6.6237 2.0709 6.0507 24 1 -0.3633 0.6016 0.8332 25 1 -0.3632 0.4208 -0.9376 26 1 -0.3633 -1.0224 0.1044 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 2.1439 1.6407 -2.1426 30 1 0.5584 2.0462 -1.4427 31 1 3.9902 3.4494 -2.0585 32 1 4.2371 5.9706 -1.8038 33 1 2.2046 7.1239 -0.8148 34 1 3.9115 0.6837 -0.3999 35 1 3.4408 2.2102 2.0781 36 1 3.6078 0.4417 1.9660 37 1 5.7946 0.4228 -0.1853 38 1 7.1824 0.4831 0.9281 39 1 5.7927 -0.5668 1.2942 40 1 5.3914 3.6843 1.5635 41 1 6.9480 2.9660 1.0854 42 1 5.5603 2.9053 -0.0280 43 1 9.0319 1.8040 2.6989 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590970577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:24 Heat of formation + Delta-G solvation = 13.444419 kcal Electronic energy + Delta-G solvation = -20708.960896 eV Core-core repulsion = 17880.055462 eV Total energy + Delta-G solvation = -2828.905434 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.33335 -37.00198 -35.43287 -32.23888 -31.24135 -30.11780 -26.91815 -25.50064 -25.17368 -24.58821 -23.05494 -22.59572 -20.30408 -18.94995 -18.37326 -16.96532 -15.83797 -15.29326 -14.98780 -14.72105 -14.35424 -14.18082 -13.71774 -13.11726 -12.72554 -12.63843 -12.47189 -12.28262 -12.01254 -11.91796 -11.78479 -11.50160 -11.23228 -11.09204 -11.01606 -10.79776 -10.64765 -10.54036 -10.49860 -10.39911 -10.11363 -9.99161 -9.32546 -9.03649 -8.57457 -8.25978 -8.24735 -8.14343 -7.56879 -5.87503 -3.97421 1.35056 1.94287 2.29126 3.16983 3.32734 3.39832 3.43103 4.46148 4.76940 4.87138 5.06562 5.25953 5.33002 5.37303 5.37969 5.55749 5.60695 5.74640 5.88333 5.92327 5.97382 6.01239 6.07674 6.21978 6.35297 6.42837 6.51887 6.53179 6.70766 6.78984 6.88541 6.95162 7.14978 7.23076 7.46835 7.55277 7.80331 7.81105 7.89325 8.04806 8.27708 8.40679 8.61275 9.04297 9.67264 11.12787 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016644 B = 0.005217 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.913365 B = 5365.358727 C = 6275.236490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.154 4.154 3 C 0.090 3.910 4 H 0.073 0.927 5 C -0.037 4.037 6 C -0.143 4.143 7 C -0.117 4.117 8 C -0.124 4.124 9 C -0.224 4.224 10 S 0.055 5.945 11 N -0.674 5.674 12 C 0.079 3.921 13 C 0.071 3.929 14 C -0.130 4.130 15 C -0.114 4.114 16 C -0.505 4.505 17 H 0.050 0.950 18 C 0.065 3.935 19 N -0.884 5.884 20 Si 0.886 3.114 21 H -0.283 1.283 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.156 0.844 34 H 0.335 0.665 35 H 0.052 0.948 36 H 0.011 0.989 37 H 0.011 0.989 38 H 0.081 0.919 39 H 0.016 0.984 40 H 0.014 0.986 41 H 0.071 0.929 42 H 0.022 0.978 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.204 2.124 -9.148 16.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.193 4.193 3 C -0.021 4.021 4 H 0.091 0.909 5 C -0.077 4.077 6 C -0.260 4.260 7 C -0.146 4.146 8 C -0.154 4.154 9 C -0.359 4.359 10 S 0.317 5.683 11 N -0.304 5.304 12 C -0.049 4.049 13 C 0.071 3.929 14 C -0.188 4.188 15 C -0.172 4.172 16 C -0.544 4.544 17 H 0.068 0.932 18 C -0.135 4.135 19 N -0.524 5.524 20 Si 0.714 3.286 21 H -0.209 1.209 22 H -0.213 1.213 23 H -0.201 1.201 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.173 0.827 34 H 0.154 0.846 35 H 0.071 0.929 36 H 0.029 0.971 37 H 0.030 0.970 38 H 0.100 0.900 39 H 0.036 0.964 40 H 0.034 0.966 41 H 0.089 0.911 42 H 0.041 0.959 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.378 2.955 -8.598 17.012 hybrid contribution 1.621 -0.966 0.885 2.084 sum -12.757 1.990 -7.713 15.040 Atomic orbital electron populations 1.21773 0.95958 1.01288 1.01668 1.22286 0.96266 0.98530 1.02247 1.21618 0.90326 0.93400 0.96765 0.90868 1.20244 1.00076 0.88623 0.98795 1.24204 0.97773 0.98107 1.05949 1.20033 0.97103 0.94411 1.03033 1.20212 0.98991 0.94649 1.01598 1.25384 0.98117 1.02500 1.09881 1.84019 1.19923 0.99112 1.65266 1.60637 1.05204 1.50922 1.13604 1.22128 0.99405 0.97612 0.85751 1.18054 0.87493 0.92853 0.94517 1.21809 1.04529 0.97296 0.95162 1.21582 1.02559 0.96687 0.96340 1.21131 0.92106 1.49410 0.91771 0.93194 1.24870 0.96734 0.95210 0.96712 1.69842 1.00882 1.50363 1.31266 0.86698 0.78064 0.77822 0.85984 1.20905 1.21321 1.20119 0.92783 0.92681 0.93132 0.91695 0.91926 0.90299 0.91181 0.84216 0.84789 0.82671 0.84623 0.92914 0.97120 0.97010 0.90034 0.96444 0.96644 0.91071 0.95939 0.93286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.53 37.16 0.35 -1.18 16 2 C -0.15 -1.88 5.39 -26.73 -0.14 -2.02 16 3 C 0.09 1.26 2.05 -67.71 -0.14 1.12 16 4 H 0.07 1.14 7.70 -51.93 -0.40 0.74 16 5 C -0.04 -0.46 5.26 -27.88 -0.15 -0.61 16 6 C -0.14 -2.01 5.53 -36.00 -0.20 -2.21 16 7 C -0.12 -1.72 9.88 -41.21 -0.41 -2.13 16 8 C -0.12 -1.73 10.18 -41.21 -0.42 -2.15 16 9 C -0.22 -2.96 11.23 29.04 0.33 -2.63 16 10 S 0.05 0.73 23.33 -107.50 -2.51 -1.78 16 11 N -0.67 -11.34 4.96 -106.73 -0.53 -11.87 16 12 C 0.08 1.64 4.41 -3.82 -0.02 1.62 16 13 C 0.07 1.71 0.57 -155.66 -0.09 1.63 16 14 C -0.13 -3.05 7.92 37.16 0.29 -2.76 16 15 C -0.11 -2.78 8.09 37.16 0.30 -2.48 16 16 C -0.51 -13.70 8.01 -34.44 -0.28 -13.98 16 17 H 0.05 1.36 7.74 -52.48 -0.41 0.96 16 18 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 19 N -0.88 -24.65 9.35 55.43 0.52 -24.13 16 20 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.51 6.75 -51.93 -0.35 0.16 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.89 7.52 -51.92 -0.39 0.50 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.76 6.47 -51.93 -0.34 0.43 16 31 H 0.14 2.09 8.06 -52.49 -0.42 1.66 16 32 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.33 5.56 6.74 -39.29 -0.26 5.29 16 35 H 0.05 1.15 7.92 -51.93 -0.41 0.74 16 36 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 37 H 0.01 0.23 6.70 -51.93 -0.35 -0.12 16 38 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 1.91 6.07 -51.93 -0.32 1.60 16 42 H 0.02 0.49 7.60 -51.93 -0.39 0.10 16 43 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 347.85 15.07 5.24 5.24 Total: -1.00 -27.47 347.85 -10.22 -37.69 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.26 Total: 4.62 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: -0.65 Total: -26.08 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.01 Total: -36.00 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.51 Total: -1.78 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.47 -10.22 -37.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.134 kcal (2) G-P(sol) polarization free energy of solvation -27.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds