Wall clock time and date at job start Tue Mar 31 2020 05:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47062 * 2 1 4 4 H 1.08993 * 109.47494 * 54.90574 * 3 2 1 5 5 C 1.53002 * 109.46543 * 294.91128 * 3 2 1 6 6 C 1.50708 * 109.46896 * 175.00393 * 5 3 2 7 7 C 1.33387 * 125.20498 * 89.71474 * 6 5 3 8 8 C 1.38425 * 114.91999 * 179.85708 * 7 6 5 9 9 C 1.33385 * 114.91890 * 0.43469 * 8 7 6 10 10 S 1.75882 * 109.59708 * 359.76605 * 9 8 7 11 11 N 1.46897 * 109.47264 * 174.91034 * 3 2 1 12 12 C 1.46895 * 111.00047 * 273.83919 * 11 3 2 13 13 C 1.53011 * 109.46993 * 185.34507 * 12 11 3 14 14 C 1.52997 * 109.46640 * 299.99399 * 13 12 11 15 15 C 1.52999 * 109.47185 * 59.99836 * 13 12 11 16 16 C 1.50694 * 109.46752 * 179.97438 * 13 12 11 17 17 H 1.08004 * 120.00218 * 359.97438 * 16 13 12 18 18 C 1.37881 * 120.00078 * 180.02562 * 16 13 12 19 19 N 1.31518 * 119.99328 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00449 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47209 * 89.99524 * 20 18 16 22 22 H 1.48497 * 109.47277 * 209.99595 * 20 18 16 23 23 H 1.48504 * 109.46913 * 329.99798 * 20 18 16 24 24 H 1.08997 * 109.46963 * 305.83007 * 1 2 3 25 25 H 1.09000 * 109.46522 * 65.83193 * 1 2 3 26 26 H 1.09003 * 109.46937 * 185.82892 * 1 2 3 27 27 H 1.09008 * 109.46802 * 119.99494 * 2 1 3 28 28 H 1.08995 * 109.47582 * 239.99648 * 2 1 3 29 29 H 1.09000 * 109.47070 * 294.99975 * 5 3 2 30 30 H 1.08994 * 109.47704 * 55.00478 * 5 3 2 31 31 H 1.08002 * 122.54038 * 0.02562 * 7 6 5 32 32 H 1.07997 * 122.53794 * 180.20190 * 8 7 6 33 33 H 1.08004 * 125.20457 * 179.78740 * 9 8 7 34 34 H 1.00903 * 110.99827 * 37.79476 * 11 3 2 35 35 H 1.08999 * 109.47045 * 305.34009 * 12 11 3 36 36 H 1.08995 * 109.47621 * 65.34435 * 12 11 3 37 37 H 1.09005 * 109.47296 * 60.00710 * 14 13 12 38 38 H 1.09000 * 109.46798 * 180.02562 * 14 13 12 39 39 H 1.08998 * 109.47651 * 300.00318 * 14 13 12 40 40 H 1.08996 * 109.47258 * 59.99654 * 15 13 12 41 41 H 1.08998 * 109.46524 * 179.97438 * 15 13 12 42 42 H 1.08998 * 109.46837 * 299.99598 * 15 13 12 43 43 H 0.97001 * 119.99325 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9820 0.8408 5 6 1.6371 2.1257 -1.3084 6 6 2.0312 3.5795 -1.2579 7 6 3.2051 4.0723 -1.6559 8 6 3.3395 5.4430 -1.5171 9 6 2.2781 6.0621 -0.9981 10 16 1.0163 4.8849 -0.6583 11 7 3.5038 1.4444 0.1229 12 6 3.9139 1.3937 1.5325 13 6 5.4349 1.5314 1.6265 14 6 6.0989 0.3853 0.8608 15 6 5.8646 2.8678 1.0180 16 6 5.8554 1.4801 3.0727 17 1 5.1122 1.3616 3.8473 18 6 7.1889 1.5855 3.4070 19 7 8.0938 1.7303 2.4637 20 14 7.7102 1.5226 5.1997 21 1 7.9800 0.1147 5.5877 22 1 8.9412 2.3319 5.3859 23 1 6.6237 2.0709 6.0507 24 1 -0.3633 0.6016 0.8332 25 1 -0.3632 0.4208 -0.9376 26 1 -0.3633 -1.0224 0.1044 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 2.1439 1.6407 -2.1426 30 1 0.5584 2.0462 -1.4427 31 1 3.9902 3.4494 -2.0585 32 1 4.2371 5.9706 -1.8038 33 1 2.2046 7.1239 -0.8148 34 1 3.9115 0.6837 -0.3999 35 1 3.4408 2.2102 2.0781 36 1 3.6078 0.4417 1.9660 37 1 5.7946 0.4228 -0.1853 38 1 7.1824 0.4831 0.9281 39 1 5.7927 -0.5668 1.2942 40 1 5.3914 3.6843 1.5635 41 1 6.9480 2.9660 1.0854 42 1 5.5603 2.9053 -0.0280 43 1 9.0319 1.8040 2.6989 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590970577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:23 Heat of formation + Delta-G solvation = 0.583949 kcal Electronic energy + Delta-G solvation = -20709.518568 eV Core-core repulsion = 17880.055462 eV Total energy + Delta-G solvation = -2829.463106 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.57532 -38.29176 -36.99313 -33.97012 -32.24079 -31.74796 -28.04960 -27.45091 -27.21681 -25.94115 -24.43269 -23.60706 -21.41726 -20.38225 -19.90582 -18.10793 -17.75226 -16.77224 -16.37161 -16.06596 -15.75248 -15.40892 -14.99902 -14.50099 -14.41032 -13.96967 -13.76177 -13.51000 -13.34876 -13.12669 -13.06421 -12.91906 -12.82973 -12.71252 -12.42060 -12.38188 -12.21139 -12.09455 -11.99240 -11.83025 -11.57806 -11.45212 -11.25750 -10.87410 -10.56700 -10.32084 -9.34806 -9.20272 -8.95412 -7.95464 -6.11869 0.28876 0.90969 1.23677 1.40297 1.42694 1.50832 2.07809 2.46325 3.26313 3.47538 3.84108 4.08093 4.29024 4.36536 4.37701 4.46558 4.64363 4.67202 4.70200 4.72530 4.88132 4.92721 4.93897 4.99818 5.07085 5.09200 5.20021 5.22361 5.32193 5.35034 5.42029 5.45294 5.51620 5.60045 5.63625 5.71740 5.81233 5.82271 6.24677 6.33708 6.40043 6.53981 6.76083 6.98968 7.55359 9.02203 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016644 B = 0.005217 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.913365 B = 5365.358727 C = 6275.236490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.148 4.148 3 C 0.094 3.906 4 H 0.057 0.943 5 C -0.032 4.032 6 C -0.154 4.154 7 C -0.134 4.134 8 C -0.142 4.142 9 C -0.227 4.227 10 S 0.065 5.935 11 N -0.672 5.672 12 C 0.099 3.901 13 C 0.063 3.937 14 C -0.117 4.117 15 C -0.095 4.095 16 C -0.526 4.526 17 H 0.040 0.960 18 C 0.024 3.976 19 N -0.902 5.902 20 Si 0.940 3.060 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.276 1.276 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.144 0.856 33 H 0.177 0.823 34 H 0.339 0.661 35 H 0.035 0.965 36 H 0.006 0.994 37 H 0.036 0.964 38 H 0.052 0.948 39 H 0.014 0.986 40 H -0.001 1.001 41 H 0.044 0.956 42 H 0.038 0.962 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.564 1.857 -9.762 17.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.187 4.187 3 C -0.017 4.017 4 H 0.075 0.925 5 C -0.071 4.071 6 C -0.271 4.271 7 C -0.163 4.163 8 C -0.172 4.172 9 C -0.362 4.362 10 S 0.327 5.673 11 N -0.303 5.303 12 C -0.030 4.030 13 C 0.063 3.937 14 C -0.175 4.175 15 C -0.153 4.153 16 C -0.565 4.565 17 H 0.058 0.942 18 C -0.175 4.175 19 N -0.541 5.541 20 Si 0.767 3.233 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.201 1.201 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.152 0.848 32 H 0.161 0.839 33 H 0.194 0.806 34 H 0.158 0.842 35 H 0.054 0.946 36 H 0.024 0.976 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.033 0.967 40 H 0.018 0.982 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.753 2.685 -9.220 18.449 hybrid contribution 2.016 -0.849 1.061 2.431 sum -13.737 1.835 -8.160 16.083 Atomic orbital electron populations 1.21748 0.94199 1.02063 1.02314 1.22195 0.97773 0.96806 1.01947 1.21621 0.88179 0.94733 0.97174 0.92503 1.20252 1.01461 0.87499 0.97919 1.24464 0.97811 0.99113 1.05697 1.20139 0.97425 0.94883 1.03849 1.20407 0.99842 0.94687 1.02312 1.25718 0.97767 1.03664 1.09051 1.83951 1.19655 0.98825 1.64861 1.60541 1.07480 1.51190 1.11083 1.21702 0.96849 0.96585 0.87886 1.18097 0.89820 0.92737 0.93075 1.21622 1.02442 0.96832 0.96632 1.21369 1.00412 0.96439 0.97108 1.21462 0.92207 1.49581 0.93276 0.94203 1.25494 0.96875 0.95113 1.00046 1.69971 1.00908 1.50635 1.32597 0.85846 0.77563 0.77889 0.82022 1.20383 1.21052 1.20061 0.93229 0.91169 0.92121 0.93495 0.90715 0.89284 0.89074 0.84796 0.83873 0.80597 0.84189 0.94635 0.97623 0.94470 0.92886 0.96663 0.98171 0.93746 0.94269 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.53 71.98 0.69 -1.92 16 2 C -0.15 -3.31 5.39 30.60 0.16 -3.14 16 3 C 0.09 2.47 2.05 44.92 0.09 2.56 16 4 H 0.06 1.71 7.70 -2.39 -0.02 1.69 16 5 C -0.03 -0.71 5.26 29.85 0.16 -0.55 16 6 C -0.15 -4.08 5.53 24.59 0.14 -3.95 16 7 C -0.13 -3.82 9.88 21.22 0.21 -3.61 16 8 C -0.14 -3.85 10.18 21.22 0.22 -3.63 16 9 C -0.23 -5.67 11.23 66.72 0.75 -4.92 16 10 S 0.07 1.62 23.33 -56.49 -1.32 0.30 16 11 N -0.67 -21.90 4.96 -491.58 -2.44 -24.34 16 12 C 0.10 4.07 4.41 86.31 0.38 4.45 16 13 C 0.06 3.05 0.57 -52.93 -0.03 3.02 16 14 C -0.12 -5.47 7.92 71.98 0.57 -4.90 16 15 C -0.10 -4.69 8.09 71.98 0.58 -4.10 16 16 C -0.53 -28.85 8.01 25.60 0.21 -28.64 16 17 H 0.04 2.21 7.74 -2.91 -0.02 2.18 16 18 C 0.02 1.30 5.15 84.66 0.44 1.74 16 19 N -0.90 -50.79 9.35 21.45 0.20 -50.59 16 20 Si 0.94 43.96 29.54 68.60 2.03 45.99 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 1.05 6.75 -2.39 -0.02 1.03 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 1.22 7.52 -2.38 -0.02 1.21 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 29 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.09 1.69 6.47 -2.39 -0.02 1.67 16 31 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 32 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 33 H 0.18 3.50 8.06 -2.91 -0.02 3.48 16 34 H 0.34 10.65 6.74 -89.69 -0.60 10.04 16 35 H 0.04 1.56 7.92 -2.39 -0.02 1.54 16 36 H 0.01 0.23 7.56 -2.39 -0.02 0.22 16 37 H 0.04 1.49 6.70 -2.38 -0.02 1.48 16 38 H 0.05 2.78 6.07 -2.39 -0.01 2.77 16 39 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.04 2.41 6.07 -2.39 -0.01 2.39 16 42 H 0.04 1.74 7.60 -2.39 -0.02 1.72 16 43 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -58.44 347.85 3.40 -55.04 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.37 Total: 21.20 kcal Atomic # 6 Polarization: -52.16 SS G_CDS: 4.55 Total: -47.60 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -2.24 Total: -74.93 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -1.32 Total: 0.30 kcal Total: -58.44 3.40 -55.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.626 kcal (2) G-P(sol) polarization free energy of solvation -58.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds