Wall clock time and date at job start Tue Mar 31 2020 05:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47322 * 2 1 4 4 H 1.09001 * 109.47556 * 55.00388 * 3 2 1 5 5 C 1.52998 * 109.47263 * 175.00636 * 3 2 1 6 6 C 1.50698 * 109.47105 * 184.99886 * 5 3 2 7 7 C 1.33395 * 125.20253 * 89.99736 * 6 5 3 8 8 C 1.38424 * 114.91870 * 179.97438 * 7 6 5 9 9 C 1.33390 * 114.92089 * 0.24743 * 8 7 6 10 10 S 1.75878 * 125.20449 * 269.95543 * 6 5 3 11 11 N 1.46901 * 109.47007 * 295.00054 * 3 2 1 12 12 C 1.46901 * 111.00260 * 299.61422 * 11 3 2 13 13 C 1.52993 * 109.46935 * 174.82848 * 12 11 3 14 14 C 1.53005 * 109.47614 * 299.99737 * 13 12 11 15 15 C 1.52998 * 109.47385 * 60.00218 * 13 12 11 16 16 C 1.50700 * 109.47201 * 179.97438 * 13 12 11 17 17 H 1.08007 * 119.99452 * 357.60045 * 16 13 12 18 18 C 1.37879 * 120.00541 * 177.59172 * 16 13 12 19 19 N 1.31511 * 120.00165 * 199.24785 * 18 16 13 20 20 Si 1.86800 * 119.99475 * 19.25690 * 18 16 13 21 21 H 1.48503 * 109.47265 * 84.41115 * 20 18 16 22 22 H 1.48503 * 109.47024 * 204.40897 * 20 18 16 23 23 H 1.48498 * 109.47214 * 324.40911 * 20 18 16 24 24 H 1.09000 * 109.47337 * 185.10317 * 1 2 3 25 25 H 1.08996 * 109.46880 * 305.10620 * 1 2 3 26 26 H 1.09006 * 109.46820 * 65.09930 * 1 2 3 27 27 H 1.09001 * 109.47460 * 239.99866 * 2 1 3 28 28 H 1.09002 * 109.46926 * 119.99950 * 2 1 3 29 29 H 1.08996 * 109.47283 * 64.99633 * 5 3 2 30 30 H 1.09008 * 109.46824 * 304.99504 * 5 3 2 31 31 H 1.07995 * 122.54151 * 359.97438 * 7 6 5 32 32 H 1.08002 * 122.53747 * 179.97438 * 8 7 6 33 33 H 1.07999 * 125.20167 * 179.75422 * 9 8 7 34 34 H 1.00897 * 110.99816 * 175.65386 * 11 3 2 35 35 H 1.08998 * 109.46886 * 294.82998 * 12 11 3 36 36 H 1.09003 * 109.46726 * 54.82909 * 12 11 3 37 37 H 1.09001 * 109.46797 * 69.92665 * 14 13 12 38 38 H 1.09001 * 109.47539 * 189.92736 * 14 13 12 39 39 H 1.08995 * 109.47007 * 309.93106 * 14 13 12 40 40 H 1.08998 * 109.47165 * 59.99405 * 15 13 12 41 41 H 1.09002 * 109.47352 * 179.97438 * 15 13 12 42 42 H 1.09005 * 109.46806 * 299.99848 * 15 13 12 43 43 H 0.97008 * 119.99734 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5649 1.4443 0.1256 6 6 4.0570 2.8633 0.2490 7 6 4.2189 3.5239 1.3965 8 6 4.6845 4.8206 1.2623 9 6 4.8958 5.2147 0.0056 10 16 4.5069 3.9013 -1.0976 11 7 1.6514 2.0992 -1.2552 12 6 2.2279 1.4038 -2.4137 13 6 1.6990 2.0358 -3.7028 14 6 0.1743 1.9146 -3.7421 15 6 2.0945 3.5131 -3.7462 16 6 2.2908 1.3228 -4.8913 17 1 3.0054 0.5267 -4.7426 18 6 1.9200 1.6867 -6.1685 19 7 2.1176 0.8593 -7.1714 20 14 1.1373 3.3550 -6.4741 21 1 2.2009 4.3796 -6.6307 22 1 0.3186 3.2984 -7.7117 23 1 0.2704 3.7134 -5.3230 24 1 -0.3634 -1.0236 0.0914 25 1 -0.3633 0.5910 0.8407 26 1 -0.3633 0.4327 -0.9322 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.0029 0.9835 -0.7598 30 1 3.8571 0.8800 1.0112 31 1 4.0031 3.0808 2.3574 32 1 4.8591 5.4659 2.1106 33 1 5.2532 6.1902 -0.2892 34 1 1.9147 3.0732 -1.2503 35 1 3.3141 1.4902 -2.3857 36 1 1.9461 0.3513 -2.3828 37 1 -0.2619 2.5719 -2.9900 38 1 -0.1877 2.2015 -4.7294 39 1 -0.1137 0.8840 -3.5349 40 1 3.1807 3.5995 -3.7182 41 1 1.7181 3.9632 -4.6648 42 1 1.6667 4.0291 -2.8866 43 1 1.8570 1.1155 -8.0701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590970578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:26 Heat of formation + Delta-G solvation = 36.104731 kcal Electronic energy + Delta-G solvation = -21090.261866 eV Core-core repulsion = 18262.339057 eV Total energy + Delta-G solvation = -2827.922809 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.76685 -37.39788 -35.44732 -31.99327 -31.63741 -30.39257 -27.31013 -26.14011 -25.31979 -24.65786 -23.95512 -22.38703 -20.07532 -19.08639 -18.46470 -16.93496 -16.31084 -15.83917 -15.42314 -14.97722 -14.44085 -13.86743 -13.78524 -13.21312 -12.92844 -12.88413 -12.73795 -12.58207 -12.44632 -12.35582 -11.94554 -11.88434 -11.70173 -11.46438 -11.05399 -10.76795 -10.61348 -10.55193 -10.46228 -10.08665 -10.01506 -9.95286 -9.65812 -8.97073 -8.68500 -8.53014 -8.35702 -8.24240 -7.73082 -6.06563 -3.98011 1.05852 1.73185 2.11942 2.76682 3.35170 3.44987 3.47478 4.48306 4.65320 4.77189 5.08207 5.10285 5.26151 5.28975 5.36727 5.46210 5.58258 5.61204 5.79545 5.81453 5.97558 6.03542 6.08322 6.13892 6.21360 6.28376 6.33291 6.36376 6.46401 6.53444 6.61119 6.67946 6.70122 6.84643 6.92263 7.00895 7.14340 7.48657 7.58047 7.68506 7.91422 7.99238 8.59363 9.00827 9.62599 11.06829 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016550 B = 0.006560 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.472401 B = 4267.505959 C = 5373.050176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.094 3.906 4 H 0.076 0.924 5 C -0.092 4.092 6 C -0.169 4.169 7 C -0.150 4.150 8 C -0.136 4.136 9 C -0.231 4.231 10 S 0.128 5.872 11 N -0.680 5.680 12 C 0.079 3.921 13 C 0.045 3.955 14 C -0.123 4.123 15 C -0.148 4.148 16 C -0.514 4.514 17 H 0.069 0.931 18 C 0.077 3.923 19 N -0.892 5.892 20 Si 0.876 3.124 21 H -0.288 1.288 22 H -0.307 1.307 23 H -0.245 1.245 24 H 0.042 0.958 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.159 0.841 34 H 0.336 0.664 35 H 0.020 0.980 36 H 0.070 0.930 37 H 0.032 0.968 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.045 0.955 41 H 0.039 0.961 42 H 0.032 0.968 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.376 4.723 17.423 18.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C -0.018 4.018 4 H 0.094 0.906 5 C -0.134 4.134 6 C -0.287 4.287 7 C -0.180 4.180 8 C -0.167 4.167 9 C -0.367 4.367 10 S 0.392 5.608 11 N -0.311 5.311 12 C -0.050 4.050 13 C 0.044 3.956 14 C -0.181 4.181 15 C -0.205 4.205 16 C -0.551 4.551 17 H 0.087 0.913 18 C -0.125 4.125 19 N -0.529 5.529 20 Si 0.708 3.292 21 H -0.215 1.215 22 H -0.235 1.235 23 H -0.170 1.170 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.177 0.823 34 H 0.156 0.844 35 H 0.038 0.962 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.803 4.202 15.607 16.262 hybrid contribution 0.762 1.514 1.218 2.087 sum 2.564 5.715 16.825 17.953 Atomic orbital electron populations 1.21620 0.95113 1.00258 1.02796 1.21599 0.97010 0.95183 1.01676 1.21657 0.90146 0.95996 0.93957 0.90585 1.21079 0.98889 0.89792 1.03593 1.24607 1.07094 1.00914 0.96035 1.20039 1.04726 0.94799 0.98429 1.20087 1.03107 0.96460 0.97018 1.25726 1.10180 1.03814 0.96938 1.85068 1.62794 1.04141 1.08823 1.60751 1.62789 1.06324 1.01249 1.22060 0.95154 0.98337 0.89408 1.18419 0.93000 0.91460 0.92768 1.22022 0.97443 0.99543 0.99068 1.22414 1.00109 0.99176 0.98838 1.20826 1.26441 1.19020 0.88853 0.91277 1.24926 0.94716 0.96620 0.96204 1.70024 1.47996 1.34470 1.00410 0.87454 0.79808 0.85694 0.76254 1.21543 1.23548 1.17039 0.93847 0.93583 0.91012 0.91164 0.92565 0.89929 0.90110 0.84765 0.84857 0.82314 0.84362 0.96234 0.91213 0.94916 0.94140 0.94204 0.93612 0.94246 0.94889 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.74 37.16 0.36 -1.44 16 2 C -0.12 -1.49 5.21 -26.73 -0.14 -1.63 16 3 C 0.09 1.25 2.53 -67.71 -0.17 1.07 16 4 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 5 C -0.09 -1.17 4.96 -27.88 -0.14 -1.31 16 6 C -0.17 -2.21 5.14 -36.00 -0.19 -2.39 16 7 C -0.15 -1.75 10.05 -41.21 -0.41 -2.17 16 8 C -0.14 -1.52 10.18 -41.21 -0.42 -1.94 16 9 C -0.23 -2.75 11.23 29.04 0.33 -2.42 16 10 S 0.13 1.80 22.02 -107.50 -2.37 -0.57 16 11 N -0.68 -10.93 5.28 -106.73 -0.56 -11.49 16 12 C 0.08 1.50 3.76 -3.83 -0.01 1.48 16 13 C 0.04 1.00 0.57 -155.66 -0.09 0.92 16 14 C -0.12 -2.73 7.54 37.16 0.28 -2.45 16 15 C -0.15 -3.17 7.38 37.16 0.27 -2.89 16 16 C -0.51 -14.02 8.61 -34.44 -0.30 -14.32 16 17 H 0.07 2.05 7.99 -52.48 -0.42 1.63 16 18 C 0.08 2.21 5.23 -17.82 -0.09 2.12 16 19 N -0.89 -27.15 13.96 55.43 0.77 -26.37 16 20 Si 0.88 21.93 22.96 -169.99 -3.90 18.02 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.31 -7.83 7.11 56.52 0.40 -7.43 16 23 H -0.24 -5.72 4.66 56.52 0.26 -5.46 16 24 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 1.08 7.90 -51.93 -0.41 0.67 16 27 H 0.07 1.00 6.05 -51.93 -0.31 0.69 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.18 6.25 -51.93 -0.32 0.85 16 30 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 31 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 34 H 0.34 5.50 5.38 -39.29 -0.21 5.29 16 35 H 0.02 0.38 6.40 -51.93 -0.33 0.05 16 36 H 0.07 1.38 5.95 -51.93 -0.31 1.07 16 37 H 0.03 0.66 7.89 -51.93 -0.41 0.25 16 38 H 0.04 0.95 4.32 -51.93 -0.22 0.72 16 39 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 40 H 0.04 0.95 7.93 -51.93 -0.41 0.54 16 41 H 0.04 0.90 2.37 -51.93 -0.12 0.77 16 42 H 0.03 0.62 6.70 -51.93 -0.35 0.28 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 331.67 15.07 5.00 5.00 Total: -1.00 -29.13 331.67 -8.69 -37.83 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.91 Total: 4.96 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: -0.72 Total: -27.37 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.21 Total: -37.87 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -3.90 Total: 18.02 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.37 Total: -0.57 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.13 -8.69 -37.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.933 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds