Wall clock time and date at job start Tue Mar 31 2020 05:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47112 * 2 1 4 4 C 1.53001 * 109.46729 * 240.00340 * 2 1 3 5 5 N 1.46892 * 109.47185 * 120.00521 * 2 1 3 6 6 C 1.46905 * 110.99927 * 208.65525 * 5 2 1 7 7 C 1.53001 * 109.46893 * 91.12991 * 6 5 2 8 8 C 1.53010 * 109.46689 * 185.47576 * 7 6 5 9 9 C 1.50693 * 109.46689 * 179.97438 * 8 7 6 10 10 H 1.08005 * 120.00727 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99788 * 179.97438 * 9 8 7 12 12 N 1.31521 * 119.99852 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00057 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47143 * 89.99940 * 13 11 9 15 15 H 1.48499 * 109.47076 * 209.99905 * 13 11 9 16 16 H 1.48500 * 109.47115 * 329.99866 * 13 11 9 17 17 C 1.46898 * 111.00511 * 84.70192 * 5 2 1 18 18 C 1.50703 * 109.47042 * 291.16780 * 17 5 2 19 19 C 1.38426 * 122.53890 * 104.44596 * 18 17 5 20 20 C 1.33387 * 114.91816 * 179.97438 * 19 18 17 21 21 S 1.75877 * 109.59539 * 359.97438 * 20 19 18 22 22 C 1.33389 * 122.53834 * 284.42236 * 18 17 5 23 23 H 1.08998 * 109.46877 * 305.59554 * 1 2 3 24 24 H 1.09000 * 109.47467 * 65.60021 * 1 2 3 25 25 H 1.09000 * 109.47038 * 185.60310 * 1 2 3 26 26 H 1.08994 * 109.47475 * 180.73491 * 3 2 1 27 27 H 1.09000 * 109.47740 * 300.73711 * 3 2 1 28 28 H 1.09008 * 109.46957 * 60.73476 * 3 2 1 29 29 H 1.08996 * 109.47283 * 310.83535 * 4 2 1 30 30 H 1.09004 * 109.47184 * 70.83420 * 4 2 1 31 31 H 1.09003 * 109.47052 * 190.83482 * 4 2 1 32 32 H 1.09000 * 109.47052 * 211.13099 * 6 5 2 33 33 H 1.08995 * 109.46733 * 331.12909 * 6 5 2 34 34 H 1.09000 * 109.46956 * 305.46599 * 7 6 5 35 35 H 1.08989 * 109.47364 * 65.47379 * 7 6 5 36 36 H 1.08999 * 109.46692 * 300.00009 * 8 7 6 37 37 H 1.08997 * 109.47129 * 59.99991 * 8 7 6 38 38 H 0.97003 * 119.99415 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.47732 * 171.16282 * 17 5 2 40 40 H 1.08999 * 109.47229 * 51.16328 * 17 5 2 41 41 H 1.07993 * 122.54224 * 359.70392 * 19 18 17 42 42 H 1.08004 * 125.20234 * 179.97438 * 20 19 18 43 43 H 1.07999 * 125.20184 * 0.05382 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0197 -0.6926 1.1993 6 6 3.3298 -0.1706 1.6106 7 6 3.1330 0.9730 2.6077 8 6 4.4879 1.6060 2.9316 9 6 4.2939 2.7328 3.9132 10 1 3.3035 2.9732 4.2708 11 6 5.3810 3.4563 4.3559 12 7 5.2118 4.4394 5.2130 13 14 7.0941 3.0401 3.7382 14 1 7.3831 3.8272 2.5126 15 1 8.0923 3.3717 4.7864 16 1 7.1686 1.5905 3.4245 17 6 2.0758 -2.1444 0.9829 18 6 0.6755 -2.6905 0.8732 19 6 0.1133 -3.0607 -0.3364 20 6 -1.1346 -3.5250 -0.2574 21 16 -1.6644 -3.5103 1.4196 22 6 -0.1160 -2.8540 1.9344 23 1 -0.3633 0.5982 0.8356 24 1 -0.3634 0.4245 -0.9359 25 1 -0.3633 -1.0228 0.1003 26 1 3.1299 1.4425 -0.0132 27 1 1.6660 1.9602 -0.8833 28 1 1.6874 1.9525 0.8966 29 1 1.5275 -1.6778 -1.3512 30 1 1.8429 -0.1080 -2.1287 31 1 3.1127 -0.8916 -1.1581 32 1 3.9070 -0.9670 2.0804 33 1 3.8649 0.1983 0.7356 34 1 2.4753 1.7254 2.1724 35 1 2.6855 0.5846 3.5224 36 1 5.1456 0.8536 3.3668 37 1 4.9354 1.9945 2.0168 38 1 5.9766 4.9485 5.5240 39 1 2.5856 -2.6175 1.8222 40 1 2.6205 -2.3538 0.0623 41 1 0.6433 -2.9758 -1.2735 42 1 -1.7288 -3.8590 -1.0952 43 1 0.1529 -2.6193 2.9537 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595603624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:18 Heat of formation + Delta-G solvation = 49.229739 kcal Electronic energy + Delta-G solvation = -20677.349670 eV Core-core repulsion = 17849.996004 eV Total energy + Delta-G solvation = -2827.353666 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.11935 -37.44140 -34.08836 -32.62723 -31.70549 -29.60884 -28.38285 -27.17922 -25.97521 -25.36358 -22.76308 -22.28632 -20.05430 -19.14580 -18.20586 -17.56007 -16.66170 -16.37271 -15.35512 -15.26876 -14.17427 -13.96685 -13.83292 -13.54293 -13.21735 -13.03059 -12.86256 -12.67167 -12.51301 -12.20128 -11.96496 -11.84817 -11.71686 -11.34794 -11.30385 -11.16379 -10.85703 -10.84269 -10.76538 -10.51952 -10.34388 -9.84576 -9.51575 -9.38636 -9.09242 -8.85074 -8.48759 -8.38079 -7.95606 -5.99497 -3.96512 0.97189 1.60605 1.93226 2.59904 3.32711 3.40123 3.43866 4.13458 4.48980 4.81275 4.95128 4.98410 5.04658 5.24805 5.31472 5.33763 5.34875 5.50827 5.56943 5.61026 5.69537 5.78361 5.84540 5.86901 5.96601 5.99690 6.06626 6.15553 6.24244 6.32553 6.33349 6.39802 6.45803 6.57015 6.71098 6.79657 7.04909 7.37370 7.40246 7.51343 7.56623 7.86596 8.61156 9.07114 9.63644 11.14224 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028210 B = 0.003802 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.304060 B = 7362.856793 C = 7649.525761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.109 3.891 3 C -0.161 4.161 4 C -0.184 4.184 5 N -0.521 5.521 6 C 0.048 3.952 7 C -0.102 4.102 8 C -0.014 4.014 9 C -0.515 4.515 10 H 0.071 0.929 11 C 0.064 3.936 12 N -0.906 5.906 13 Si 0.879 3.121 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.266 1.266 17 C 0.104 3.896 18 C -0.089 4.089 19 C -0.127 4.127 20 C -0.220 4.220 21 S 0.077 5.923 22 C -0.184 4.184 23 H 0.057 0.943 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.012 0.988 37 H 0.007 0.993 38 H 0.262 0.738 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.141 0.859 42 H 0.160 0.840 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.231 -16.878 -13.672 24.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.019 3.981 3 C -0.217 4.217 4 C -0.243 4.243 5 N -0.245 5.245 6 C -0.079 4.079 7 C -0.139 4.139 8 C -0.051 4.051 9 C -0.553 4.553 10 H 0.089 0.911 11 C -0.136 4.136 12 N -0.545 5.545 13 Si 0.707 3.293 14 H -0.204 1.204 15 H -0.215 1.215 16 H -0.191 1.191 17 C -0.026 4.026 18 C -0.101 4.101 19 C -0.158 4.158 20 C -0.355 4.355 21 S 0.340 5.660 22 C -0.320 4.320 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.030 0.970 37 H 0.025 0.975 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.158 0.842 42 H 0.178 0.822 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.815 -17.069 -12.438 24.704 hybrid contribution 2.814 0.222 -1.631 3.260 sum -10.001 -16.847 -14.068 24.119 Atomic orbital electron populations 1.22082 0.94158 1.03040 1.00803 1.21005 0.95518 0.93897 0.87654 1.22421 1.01916 0.94894 1.02510 1.22706 1.01045 1.01623 0.98902 1.62326 1.27651 1.01718 1.32783 1.22463 0.88292 0.98527 0.98619 1.21722 0.99490 0.95429 0.97290 1.19560 0.93344 0.96034 0.96207 1.21159 0.95618 1.13994 1.24527 0.91056 1.25044 0.99023 0.94786 0.94756 1.69927 1.30840 1.21252 1.32495 0.86786 0.84643 0.79330 0.78552 1.20417 1.21489 1.19085 1.20925 0.91468 0.89052 1.01195 1.18786 0.97972 1.01441 0.91899 1.20189 0.95183 1.01521 0.98866 1.25501 1.00149 1.10096 0.99766 1.84275 1.16883 1.63839 1.01023 1.25463 0.96070 1.07007 1.03453 0.92376 0.93489 0.91129 0.91617 0.93024 0.90199 0.91448 0.92493 0.92865 0.92285 0.93781 0.91453 0.92614 0.96989 0.97464 0.92857 0.90124 0.93275 0.84192 0.82232 0.81666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.42 37.16 0.31 -1.48 16 2 C 0.11 1.40 0.68 -131.61 -0.09 1.31 16 3 C -0.16 -2.30 6.99 37.15 0.26 -2.04 16 4 C -0.18 -2.03 7.07 37.16 0.26 -1.77 16 5 N -0.52 -7.25 4.24 -220.41 -0.94 -8.19 16 6 C 0.05 0.77 4.54 -3.82 -0.02 0.75 16 7 C -0.10 -2.02 5.04 -26.73 -0.13 -2.15 16 8 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 9 C -0.51 -14.86 9.66 -34.44 -0.33 -15.20 16 10 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 11 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 12 N -0.91 -28.32 13.96 55.43 0.77 -27.55 16 13 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 17 C 0.10 1.23 4.77 -4.98 -0.02 1.21 16 18 C -0.09 -0.98 3.22 -106.25 -0.34 -1.32 16 19 C -0.13 -1.23 7.09 -41.21 -0.29 -1.52 16 20 C -0.22 -1.98 11.09 29.04 0.32 -1.66 16 21 S 0.08 0.74 23.34 -107.50 -2.51 -1.77 16 22 C -0.18 -2.04 10.80 29.04 0.31 -1.73 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.85 3.45 -51.93 -0.18 0.67 16 26 H 0.07 1.00 5.78 -51.93 -0.30 0.70 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.29 5.69 -51.92 -0.30 1.00 16 29 H 0.07 0.66 3.37 -51.93 -0.17 0.49 16 30 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 31 H 0.05 0.61 7.25 -51.93 -0.38 0.23 16 32 H 0.06 0.92 7.45 -51.93 -0.39 0.53 16 33 H 0.04 0.70 5.54 -51.93 -0.29 0.41 16 34 H 0.07 1.36 4.81 -51.93 -0.25 1.11 16 35 H 0.06 1.16 8.14 -51.94 -0.42 0.74 16 36 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 37 H 0.01 0.17 7.57 -51.93 -0.39 -0.23 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.08 0.95 7.71 -51.93 -0.40 0.55 16 40 H 0.05 0.54 5.57 -51.93 -0.29 0.25 16 41 H 0.14 1.20 5.91 -52.49 -0.31 0.89 16 42 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 43 H 0.17 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 329.03 15.07 4.96 4.96 Total: -1.00 -30.41 329.03 -8.91 -39.33 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.56 Total: 0.13 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 0.03 Total: -24.22 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.16 Total: -35.74 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.51 Total: -1.77 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.41 -8.91 -39.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595603624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.556 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds