Wall clock time and date at job start Tue Mar 31 2020 05:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47417 * 2 1 4 4 C 1.50704 * 109.47388 * 179.97438 * 3 2 1 5 5 C 1.33383 * 125.20107 * 89.99695 * 4 3 2 6 6 C 1.38427 * 114.92226 * 179.79395 * 5 4 3 7 7 C 1.33395 * 114.91651 * 0.43333 * 6 5 4 8 8 C 1.50698 * 125.20275 * 179.85778 * 7 6 5 9 9 N 1.46896 * 109.46934 * 89.71694 * 8 7 6 10 10 C 1.46902 * 110.99878 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47143 * 180.02562 * 10 9 8 12 12 C 1.53005 * 109.46746 * 299.99830 * 11 10 9 13 13 C 1.52993 * 109.47587 * 59.99744 * 11 10 9 14 14 C 1.50701 * 109.47045 * 180.02562 * 11 10 9 15 15 H 1.07994 * 120.00260 * 1.23263 * 14 11 10 16 16 C 1.37878 * 119.99979 * 181.24267 * 14 11 10 17 17 N 1.31518 * 120.00088 * 194.11000 * 16 14 11 18 18 Si 1.86798 * 119.99930 * 14.10330 * 16 14 11 19 19 H 1.48497 * 109.47051 * 84.54119 * 18 16 14 20 20 H 1.48506 * 109.47120 * 204.53544 * 18 16 14 21 21 H 1.48498 * 109.47612 * 324.53575 * 18 16 14 22 22 S 1.75881 * 109.59383 * 359.59346 * 7 6 5 23 23 H 1.09000 * 109.47198 * 300.00095 * 1 2 3 24 24 H 1.09000 * 109.46509 * 60.00127 * 1 2 3 25 25 H 1.08995 * 109.47423 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47198 * 239.99904 * 2 1 3 27 27 H 1.08998 * 109.47207 * 120.00112 * 2 1 3 28 28 H 1.08999 * 109.47412 * 60.00154 * 3 2 1 29 29 H 1.08997 * 109.47441 * 299.99898 * 3 2 1 30 30 H 1.08002 * 122.54187 * 0.02920 * 5 4 3 31 31 H 1.07997 * 122.54133 * 180.27727 * 6 5 4 32 32 H 1.09006 * 109.47099 * 329.72351 * 8 7 6 33 33 H 1.08992 * 109.47369 * 209.72181 * 8 7 6 34 34 H 1.00900 * 111.00607 * 303.95750 * 9 8 7 35 35 H 1.09002 * 109.47065 * 300.00379 * 10 9 8 36 36 H 1.08998 * 109.47120 * 60.00176 * 10 9 8 37 37 H 1.08993 * 109.47054 * 69.52219 * 12 11 10 38 38 H 1.09005 * 109.46834 * 189.51839 * 12 11 10 39 39 H 1.09000 * 109.47453 * 309.51271 * 12 11 10 40 40 H 1.09002 * 109.46892 * 60.00057 * 13 11 10 41 41 H 1.08997 * 109.47377 * 180.02562 * 13 11 10 42 42 H 1.09003 * 109.47120 * 300.00250 * 13 11 10 43 43 H 0.96998 * 120.00203 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3164 1.4422 -1.0890 6 6 5.6784 1.4467 -0.8414 7 6 6.0150 1.4415 0.4494 8 6 7.4257 1.4418 0.9793 9 7 7.8838 2.8268 1.1514 10 6 9.2583 2.8663 1.6683 11 6 9.6991 4.3219 1.8345 12 6 9.6435 5.0295 0.4791 13 6 8.7640 5.0290 2.8176 14 6 11.1094 4.3624 2.3643 15 1 11.6454 3.4422 2.5437 16 6 11.7152 5.5742 2.6200 17 7 13.0150 5.6321 2.8122 18 14 10.6899 7.1340 2.6935 19 1 10.1148 7.2846 4.0543 20 1 11.5489 8.3059 2.3867 21 1 9.5911 7.0515 1.6980 22 16 4.5604 1.4419 1.4382 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6768 1.9563 -0.8899 30 1 3.9078 1.4424 -2.0887 31 1 6.4128 1.4515 -1.6332 32 1 8.0789 0.9280 0.2739 33 1 7.4530 0.9280 1.9402 34 1 7.8070 3.3431 0.2879 35 1 9.2979 2.3625 2.6341 36 1 9.9245 2.3622 0.9681 37 1 8.6040 5.1501 0.1745 38 1 10.1140 6.0093 0.5611 39 1 10.1731 4.4333 -0.2640 40 1 8.8036 4.5249 3.7832 41 1 9.0778 6.0661 2.9356 42 1 7.7441 4.9997 2.4340 43 1 13.4413 6.4847 2.9917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598646756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:17 Heat of formation + Delta-G solvation = 25.366479 kcal Electronic energy + Delta-G solvation = -19491.043870 eV Core-core repulsion = 16662.655415 eV Total energy + Delta-G solvation = -2828.388455 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.37477 -37.22351 -35.41980 -33.91619 -31.66879 -30.25852 -27.65881 -26.18456 -25.18221 -24.68589 -23.45989 -22.35791 -21.65545 -18.95068 -18.64875 -17.07740 -16.03960 -15.63969 -15.25119 -15.17207 -14.95299 -14.21719 -13.92855 -13.52351 -13.44467 -12.99787 -12.89006 -12.62969 -12.57068 -12.38609 -11.93342 -11.84664 -11.75973 -11.71424 -11.50228 -11.33972 -11.04784 -10.85510 -10.60641 -10.28684 -10.06168 -10.00128 -9.84794 -8.96367 -8.55833 -8.51304 -8.40722 -8.33868 -7.90093 -6.07177 -4.02849 0.99467 1.64478 2.07271 2.73196 3.34353 3.43836 3.46928 4.45555 4.50530 4.66835 4.70000 4.76888 5.02476 5.11016 5.21600 5.26201 5.32321 5.41761 5.49368 5.54974 5.62546 5.72462 5.79059 5.83455 5.96405 5.97214 6.12327 6.19441 6.28024 6.32050 6.49329 6.54534 6.64898 6.67985 6.85156 6.94696 7.03443 7.36779 7.46279 7.58682 7.78132 7.93951 8.55642 8.97350 9.59076 11.06139 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.038959 B = 0.003140 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.540780 B = 8915.647268 C = 9118.172189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.047 4.047 4 C -0.189 4.189 5 C -0.135 4.135 6 C -0.142 4.142 7 C -0.159 4.159 8 C 0.125 3.875 9 N -0.685 5.685 10 C 0.084 3.916 11 C 0.041 3.959 12 C -0.144 4.144 13 C -0.135 4.135 14 C -0.512 4.512 15 H 0.071 0.929 16 C 0.073 3.927 17 N -0.897 5.897 18 Si 0.888 3.112 19 H -0.287 1.287 20 H -0.309 1.309 21 H -0.248 1.248 22 S 0.117 5.883 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.340 0.660 35 H 0.065 0.935 36 H 0.024 0.976 37 H 0.027 0.973 38 H 0.054 0.946 39 H 0.039 0.961 40 H 0.045 0.955 41 H 0.030 0.970 42 H 0.043 0.957 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.109 -10.207 -7.213 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.086 4.086 4 C -0.306 4.306 5 C -0.166 4.166 6 C -0.173 4.173 7 C -0.277 4.277 8 C -0.006 4.006 9 N -0.317 5.317 10 C -0.044 4.044 11 C 0.040 3.960 12 C -0.202 4.202 13 C -0.192 4.192 14 C -0.550 4.550 15 H 0.089 0.911 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.215 1.215 20 H -0.238 1.238 21 H -0.174 1.174 22 S 0.382 5.618 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.159 0.841 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.487 -10.041 -4.979 25.125 hybrid contribution 0.499 0.694 -2.173 2.335 sum -21.988 -9.347 -7.152 24.940 Atomic orbital electron populations 1.21786 0.95569 1.01777 1.01897 1.21551 0.95654 0.95965 1.02604 1.20149 0.87835 0.97562 1.03059 1.24489 0.99375 1.10476 0.96282 1.19973 0.92848 1.04785 0.98961 1.20057 0.96183 1.05146 0.95932 1.24479 0.98847 1.08189 0.96143 1.20375 0.88083 0.92169 0.99973 1.60657 1.25663 1.10486 1.34940 1.21994 0.84880 0.99066 0.98480 1.18459 0.95133 0.90245 0.92150 1.22301 0.97972 1.01169 0.98719 1.22166 0.98574 0.98529 0.99962 1.20854 0.95896 0.94227 1.44036 0.91083 1.24984 0.94480 0.98942 0.94515 1.69966 1.08887 1.26091 1.48493 0.87251 0.79604 0.82203 0.78817 1.21490 1.23787 1.17410 1.84277 0.96122 1.72396 1.08974 0.92632 0.92660 0.92598 0.91692 0.91772 0.90934 0.90287 0.84918 0.84744 0.93712 0.90294 0.84136 0.91682 0.95778 0.95409 0.92751 0.94198 0.93616 0.95156 0.93776 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 3 C -0.05 -0.39 5.71 -27.88 -0.16 -0.55 16 4 C -0.19 -2.03 5.76 -36.00 -0.21 -2.24 16 5 C -0.14 -1.48 10.05 -41.21 -0.41 -1.89 16 6 C -0.14 -1.71 10.05 -41.20 -0.41 -2.12 16 7 C -0.16 -2.08 6.02 -36.00 -0.22 -2.30 16 8 C 0.12 1.76 6.18 -4.98 -0.03 1.73 16 9 N -0.69 -11.42 5.71 -115.06 -0.66 -12.07 16 10 C 0.08 1.64 4.57 -3.82 -0.02 1.63 16 11 C 0.04 0.94 0.57 -155.66 -0.09 0.85 16 12 C -0.14 -3.10 7.24 37.16 0.27 -2.84 16 13 C -0.14 -3.02 7.54 37.15 0.28 -2.74 16 14 C -0.51 -14.14 8.62 -34.44 -0.30 -14.43 16 15 H 0.07 2.12 7.99 -52.49 -0.42 1.71 16 16 C 0.07 2.09 5.32 -17.82 -0.09 1.99 16 17 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 18 Si 0.89 22.27 22.79 -169.99 -3.87 18.39 16 19 H -0.29 -7.20 7.10 56.52 0.40 -6.80 16 20 H -0.31 -7.86 7.11 56.52 0.40 -7.46 16 21 H -0.25 -5.79 4.65 56.52 0.26 -5.52 16 22 S 0.12 1.44 23.31 -107.50 -2.51 -1.07 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.34 5.58 6.99 -39.29 -0.27 5.30 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.03 0.52 7.06 -51.93 -0.37 0.16 16 38 H 0.05 1.25 4.30 -51.93 -0.22 1.03 16 39 H 0.04 0.82 8.12 -51.93 -0.42 0.40 16 40 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.03 0.71 2.26 -51.93 -0.12 0.59 16 42 H 0.04 0.90 7.60 -51.93 -0.39 0.50 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -29.62 344.53 -9.66 -39.29 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.41 Total: 1.47 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -1.18 Total: -24.49 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.12 Total: -38.78 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -3.87 Total: 18.39 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.51 Total: -1.07 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.62 -9.66 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598646756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.652 kcal (2) G-P(sol) polarization free energy of solvation -29.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds