Wall clock time and date at job start Tue Mar 31 2020 05:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46835 * 2 1 4 4 C 1.50701 * 109.47088 * 180.02562 * 3 2 1 5 5 C 1.33383 * 125.20317 * 89.71330 * 4 3 2 6 6 C 1.38427 * 114.91952 * 180.26832 * 5 4 3 7 7 C 1.33394 * 114.92011 * 359.97438 * 6 5 4 8 8 C 1.50701 * 125.20310 * 180.02562 * 7 6 5 9 9 N 1.46903 * 109.47125 * 89.99711 * 8 7 6 10 10 C 1.46904 * 110.99856 * 169.99946 * 9 8 7 11 11 C 1.50701 * 109.46828 * 284.27644 * 10 9 8 12 12 H 1.08000 * 120.00426 * 4.02391 * 11 10 9 13 13 C 1.37882 * 119.99643 * 184.02022 * 11 10 9 14 14 N 1.31520 * 119.99614 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00195 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.46760 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47218 * 119.99868 * 15 13 11 18 18 H 1.48500 * 109.47291 * 240.00505 * 15 13 11 19 19 C 1.46896 * 111.00237 * 293.95841 * 9 8 7 20 20 C 1.53001 * 109.46894 * 171.01666 * 19 9 8 21 21 C 1.52999 * 109.47080 * 291.01191 * 19 9 8 22 22 S 1.75877 * 109.59317 * 0.02562 * 7 6 5 23 23 H 1.09003 * 109.46951 * 60.00644 * 1 2 3 24 24 H 1.08998 * 109.46568 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47321 * 300.00048 * 1 2 3 26 26 H 1.08992 * 109.47321 * 239.99952 * 2 1 3 27 27 H 1.09003 * 109.46951 * 119.99356 * 2 1 3 28 28 H 1.08997 * 109.47554 * 59.99575 * 3 2 1 29 29 H 1.09003 * 109.46825 * 299.99433 * 3 2 1 30 30 H 1.07994 * 122.54377 * 0.24422 * 5 4 3 31 31 H 1.07996 * 122.53920 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.47203 * 210.00034 * 8 7 6 33 33 H 1.09007 * 109.47043 * 330.00554 * 8 7 6 34 34 H 1.08992 * 109.47074 * 44.28014 * 10 9 8 35 35 H 1.08996 * 109.46629 * 164.27896 * 10 9 8 36 36 H 0.97005 * 119.99635 * 179.97438 * 14 13 11 37 37 H 1.09004 * 109.47403 * 51.01468 * 19 9 8 38 38 H 1.08998 * 109.47603 * 66.06344 * 20 19 9 39 39 H 1.09006 * 109.46692 * 186.06158 * 20 19 9 40 40 H 1.08994 * 109.47169 * 306.06020 * 20 19 9 41 41 H 1.09004 * 109.46786 * 60.00191 * 21 19 9 42 42 H 1.08995 * 109.47235 * 179.97438 * 21 19 9 43 43 H 1.08994 * 109.47388 * 300.00385 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3155 1.4374 -1.0908 6 6 5.6776 1.4327 -0.8443 7 6 6.0152 1.4348 0.4462 8 6 7.4264 1.4313 0.9751 9 7 7.8897 2.8151 1.1434 10 6 9.1630 2.8587 1.8747 11 6 8.9099 2.6091 3.3392 12 1 7.9138 2.3713 3.6823 13 6 9.9500 2.6844 4.2412 14 7 11.1629 2.9745 3.8234 15 14 9.6366 2.3743 6.0564 16 1 8.1983 2.0692 6.2652 17 1 10.4574 1.2233 6.5109 18 1 10.0048 3.5835 6.8359 19 6 8.0045 3.4934 -0.1545 20 6 8.2693 4.9835 0.0705 21 6 9.1620 2.8839 -0.9479 22 16 4.5615 1.4422 1.4362 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6767 1.9563 -0.8901 30 1 3.9061 1.4364 -2.0902 31 1 6.4113 1.4287 -1.6367 32 1 7.4526 0.9197 1.9372 33 1 8.0772 0.9135 0.2704 34 1 9.8319 2.0912 1.4856 35 1 9.6218 3.8391 1.7472 36 1 11.8946 3.0278 4.4580 37 1 7.0764 3.3696 -0.7126 38 1 9.2480 5.1129 0.5325 39 1 8.2475 5.5049 -0.8865 40 1 7.5011 5.3942 0.7256 41 1 8.9733 1.8223 -1.1082 42 1 9.2469 3.3869 -1.9111 43 1 10.0900 3.0077 -0.3899 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598678337.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:21 Heat of formation + Delta-G solvation = -1.765835 kcal Electronic energy + Delta-G solvation = -19986.154787 eV Core-core repulsion = 17156.589787 eV Total energy + Delta-G solvation = -2829.565000 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.93480 -38.48639 -35.81365 -34.86572 -33.05913 -31.37549 -29.31261 -28.00978 -27.49917 -25.20068 -24.32473 -23.53923 -22.25514 -20.31655 -19.61636 -18.69403 -17.69310 -16.79356 -16.44238 -16.21145 -15.79052 -15.71588 -14.97748 -14.78101 -14.51288 -14.30061 -14.14011 -13.80784 -13.68774 -13.32607 -13.17932 -12.94704 -12.83504 -12.76852 -12.45133 -12.34829 -12.33075 -12.13717 -12.09203 -12.04418 -11.88564 -11.61252 -11.36443 -11.27521 -11.26628 -10.57781 -9.34052 -9.31203 -8.90383 -8.18436 -6.27439 0.15521 0.78805 1.25214 1.38370 1.39397 1.52601 1.89408 2.40291 3.12692 3.40256 3.84678 3.97411 4.07916 4.14058 4.23391 4.24641 4.37114 4.47827 4.52298 4.60704 4.68949 4.77420 4.82363 4.85198 4.90171 4.92033 4.94650 5.01428 5.05217 5.15281 5.22906 5.25906 5.32566 5.39178 5.41584 5.45022 5.45904 5.48508 5.68625 5.74160 6.11779 6.41046 6.69528 6.88356 7.41579 8.91502 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.004573 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.229797 B = 6121.186033 C = 7300.708467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.045 4.045 4 C -0.177 4.177 5 C -0.139 4.139 6 C -0.136 4.136 7 C -0.168 4.168 8 C 0.132 3.868 9 N -0.532 5.532 10 C 0.212 3.788 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.005 3.995 14 N -0.932 5.932 15 Si 0.961 3.039 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.278 1.278 19 C 0.070 3.930 20 C -0.134 4.134 21 C -0.175 4.175 22 S 0.076 5.924 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.161 0.839 31 H 0.145 0.855 32 H 0.060 0.940 33 H 0.045 0.955 34 H -0.035 1.035 35 H 0.018 0.982 36 H 0.263 0.737 37 H 0.090 0.910 38 H 0.034 0.966 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.691 -3.625 -11.901 21.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.084 4.084 4 C -0.295 4.295 5 C -0.169 4.169 6 C -0.167 4.167 7 C -0.286 4.286 8 C 0.002 3.998 9 N -0.256 5.256 10 C 0.086 3.914 11 C -0.558 4.558 12 H 0.072 0.928 13 C -0.193 4.193 14 N -0.573 5.573 15 Si 0.786 3.214 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.038 4.038 20 C -0.192 4.192 21 C -0.234 4.234 22 S 0.340 5.660 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.179 0.821 31 H 0.163 0.837 32 H 0.079 0.921 33 H 0.063 0.937 34 H -0.017 1.017 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.053 0.947 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -18.133 -3.336 -9.984 20.967 hybrid contribution 1.641 -0.526 -0.662 1.846 sum -16.492 -3.863 -10.646 20.006 Atomic orbital electron populations 1.21762 0.94274 1.02258 1.02378 1.21524 0.96699 0.95194 1.02105 1.20251 0.85908 0.98342 1.03876 1.24819 1.00379 1.09391 0.94901 1.20193 0.92006 1.04619 1.00078 1.20252 0.97168 1.04144 0.95180 1.24310 0.97843 1.09634 0.96804 1.20296 0.89313 0.90856 0.99287 1.62274 1.31178 1.14244 1.17951 1.19366 0.85147 0.94751 0.92160 1.21521 0.94488 1.46530 0.93284 0.92798 1.25805 0.94767 0.95210 1.03532 1.70079 1.00771 1.50335 1.36125 0.85458 0.78398 0.77881 0.79663 1.19167 1.20347 1.20324 1.21813 0.98106 0.94505 0.89413 1.21767 1.00727 0.95034 1.01633 1.22369 0.98966 1.01018 1.01039 1.84494 0.97193 1.73160 1.11109 0.91670 0.92142 0.92608 0.91520 0.93051 0.90975 0.88397 0.82113 0.83741 0.92129 0.93670 1.01746 0.96386 0.92785 0.89187 0.94663 0.90185 0.93239 0.92913 0.90211 0.94721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 71.98 0.71 -1.10 16 2 C -0.12 -1.85 5.92 30.60 0.18 -1.67 16 3 C -0.04 -0.78 5.71 29.85 0.17 -0.61 16 4 C -0.18 -4.25 5.76 24.59 0.14 -4.11 16 5 C -0.14 -3.22 10.05 21.22 0.21 -3.01 16 6 C -0.14 -3.73 8.43 21.22 0.18 -3.55 16 7 C -0.17 -5.60 5.46 24.59 0.13 -5.47 16 8 C 0.13 5.25 5.16 85.56 0.44 5.69 16 9 N -0.53 -23.28 4.37 -880.06 -3.85 -27.13 16 10 C 0.21 11.27 3.38 85.56 0.29 11.56 16 11 C -0.52 -30.08 8.60 25.60 0.22 -29.86 16 12 H 0.05 3.14 7.68 -2.91 -0.02 3.11 16 13 C 0.00 0.27 5.46 84.65 0.46 0.74 16 14 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 15 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 16 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 C 0.07 2.51 2.77 44.92 0.12 2.63 16 20 C -0.13 -4.70 9.00 71.98 0.65 -4.05 16 21 C -0.18 -5.84 8.54 71.98 0.61 -5.22 16 22 S 0.08 2.36 23.31 -56.49 -1.32 1.04 16 23 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 31 H 0.14 3.53 7.98 -2.91 -0.02 3.51 16 32 H 0.06 2.72 7.34 -2.39 -0.02 2.70 16 33 H 0.05 1.74 6.35 -2.38 -0.02 1.73 16 34 H -0.04 -2.01 7.31 -2.39 -0.02 -2.03 16 35 H 0.02 1.04 5.92 -2.39 -0.01 1.02 16 36 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 37 H 0.09 2.92 5.77 -2.38 -0.01 2.91 16 38 H 0.03 1.39 6.47 -2.39 -0.02 1.38 16 39 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.05 1.69 6.54 -2.38 -0.02 1.67 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.03 1.35 6.79 -2.39 -0.02 1.33 16 Total: -1.00 -64.40 351.89 2.64 -61.76 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.96 Total: 11.21 kcal Atomic # 6 Polarization: -42.56 SS G_CDS: 4.53 Total: -38.03 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -3.56 Total: -83.37 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -1.32 Total: 1.04 kcal Total: -64.40 2.64 -61.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598678337.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.997 kcal (2) G-P(sol) polarization free energy of solvation -64.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds