Wall clock time and date at job start Tue Mar 31 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47145 * 2 1 4 4 N 1.46904 * 109.46994 * 120.00214 * 2 1 3 5 5 C 1.46893 * 110.99984 * 293.45455 * 4 2 1 6 6 C 1.50700 * 109.47017 * 160.07925 * 5 4 2 7 7 C 1.33395 * 125.20006 * 95.40345 * 6 5 4 8 8 C 1.38420 * 114.91915 * 179.97438 * 7 6 5 9 9 C 1.33395 * 114.92438 * 359.97438 * 8 7 6 10 10 S 1.75881 * 125.20626 * 275.09619 * 6 5 4 11 11 C 1.46901 * 110.99605 * 169.50780 * 4 2 1 12 12 C 1.53004 * 109.47192 * 293.95313 * 11 4 2 13 13 H 1.08996 * 109.47512 * 54.99739 * 12 11 4 14 14 C 1.53003 * 109.46922 * 294.99999 * 12 11 4 15 15 C 1.52998 * 109.47302 * 175.00480 * 12 11 4 16 16 C 1.50697 * 109.47125 * 184.99928 * 15 12 11 17 17 H 1.08001 * 120.00326 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00012 * 179.97438 * 16 15 12 19 19 N 1.31512 * 119.99954 * 0.27959 * 18 16 15 20 20 Si 1.86805 * 120.00081 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47362 * 89.99850 * 20 18 16 22 22 H 1.48500 * 109.46869 * 210.00484 * 20 18 16 23 23 H 1.48504 * 109.46845 * 329.99746 * 20 18 16 24 24 H 1.08995 * 109.47192 * 300.55574 * 1 2 3 25 25 H 1.08996 * 109.47078 * 60.55831 * 1 2 3 26 26 H 1.08998 * 109.46789 * 180.55698 * 1 2 3 27 27 H 1.09001 * 109.47155 * 240.00322 * 2 1 3 28 28 H 1.09000 * 109.47342 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47121 * 300.00606 * 3 2 1 30 30 H 1.09001 * 109.46831 * 60.00124 * 3 2 1 31 31 H 1.08997 * 109.47695 * 280.08283 * 5 4 2 32 32 H 1.09003 * 109.46944 * 40.08813 * 5 4 2 33 33 H 1.07995 * 122.54299 * 359.95372 * 7 6 5 34 34 H 1.08002 * 122.53996 * 180.02562 * 8 7 6 35 35 H 1.07997 * 125.20640 * 180.02562 * 9 8 7 36 36 H 1.09007 * 109.47208 * 173.95343 * 11 4 2 37 37 H 1.08999 * 109.47744 * 53.95184 * 11 4 2 38 38 H 1.09000 * 109.47418 * 179.97438 * 14 12 11 39 39 H 1.08999 * 109.47531 * 300.00317 * 14 12 11 40 40 H 1.09008 * 109.47042 * 59.99947 * 14 12 11 41 41 H 1.08998 * 109.47351 * 64.99446 * 15 12 11 42 42 H 1.09001 * 109.46990 * 304.99717 * 15 12 11 43 43 H 0.97005 * 120.00334 * 359.71542 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.6805 0.0578 2.4159 6 6 1.7411 -0.8630 3.6073 7 6 2.7927 -1.0066 4.4154 8 6 2.6159 -1.9123 5.4472 9 6 1.4207 -2.5039 5.4773 10 16 0.4337 -1.9070 4.1496 11 6 3.4665 -0.9322 1.1151 12 6 3.7548 -1.9189 -0.0182 13 1 3.3216 -1.5441 -0.9454 14 6 3.1384 -3.2779 0.3198 15 6 5.2675 -2.0731 -0.1877 16 6 5.5527 -2.9481 -1.3811 17 1 4.7366 -3.3540 -1.9605 18 6 6.8554 -3.2304 -1.7334 19 7 7.8491 -2.7407 -1.0247 20 14 7.2089 -4.3144 -3.2131 21 1 7.3251 -3.4698 -4.4290 22 1 8.4817 -5.0481 -2.9964 23 1 6.1008 -5.2871 -3.3901 24 1 -0.3633 0.5224 0.8849 25 1 -0.3633 0.5051 -0.8949 26 1 -0.3633 -1.0276 0.0100 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.3915 0.8730 2.5501 32 1 0.6738 0.4653 2.3226 33 1 3.7123 -0.4581 4.2752 34 1 3.3870 -2.1234 6.1733 35 1 1.1059 -3.2345 6.2077 36 1 3.8216 -1.3481 2.0581 37 1 3.9798 0.0087 0.9168 38 1 3.3434 -3.9808 -0.4877 39 1 3.5716 -3.6529 1.2470 40 1 2.0607 -3.1681 0.4406 41 1 5.6887 -2.5309 0.7073 42 1 5.7179 -1.0923 -0.3404 43 1 7.6656 -2.1774 -0.2565 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602439740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:30 Heat of formation + Delta-G solvation = 15.403805 kcal Electronic energy + Delta-G solvation = -20542.935925 eV Core-core repulsion = 17714.115456 eV Total energy + Delta-G solvation = -2828.820469 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.15249 -37.40505 -35.02259 -32.46805 -31.98539 -29.41664 -27.26879 -26.62558 -26.12010 -24.51875 -22.93511 -22.54673 -20.30871 -19.12357 -18.49993 -17.22309 -16.64483 -15.66109 -15.36948 -15.23798 -14.44539 -13.93423 -13.69004 -13.46455 -13.13977 -13.00081 -12.78863 -12.68258 -12.21545 -12.17063 -12.13458 -11.70860 -11.56653 -11.34253 -11.14906 -11.06421 -10.92210 -10.71014 -10.67352 -10.54701 -10.16234 -10.06359 -9.60363 -9.37047 -8.63946 -8.43234 -8.36876 -8.25757 -8.02775 -6.28860 -3.96477 1.05470 1.72072 2.09608 2.79819 3.46499 3.50526 3.66050 4.14025 4.59723 4.84897 4.93884 5.08526 5.11728 5.21562 5.37465 5.43111 5.47738 5.57987 5.61178 5.62237 5.71844 5.73009 5.85546 5.91919 6.01808 6.13632 6.16498 6.22534 6.32171 6.35089 6.39708 6.51944 6.55347 6.67456 6.95060 7.11828 7.17579 7.32596 7.37852 7.48356 7.65533 8.31572 8.54815 8.96695 9.74820 11.11570 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017509 B = 0.004639 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.749540 B = 6034.506289 C = 6866.222215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.071 3.929 3 C -0.186 4.186 4 N -0.521 5.521 5 C 0.117 3.883 6 C -0.150 4.150 7 C -0.143 4.143 8 C -0.130 4.130 9 C -0.225 4.225 10 S 0.107 5.893 11 C 0.056 3.944 12 C -0.071 4.071 13 H 0.057 0.943 14 C -0.120 4.120 15 C 0.015 3.985 16 C -0.591 4.591 17 H 0.049 0.951 18 C 0.012 3.988 19 N -0.917 5.917 20 Si 1.069 2.931 21 H -0.289 1.289 22 H -0.285 1.285 23 H -0.289 1.289 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.159 0.841 36 H 0.070 0.930 37 H 0.030 0.970 38 H 0.053 0.947 39 H 0.036 0.964 40 H 0.043 0.957 41 H 0.006 0.994 42 H 0.001 0.999 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.902 6.127 10.061 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.038 4.038 3 C -0.245 4.245 4 N -0.245 5.245 5 C -0.012 4.012 6 C -0.268 4.268 7 C -0.174 4.174 8 C -0.161 4.161 9 C -0.360 4.360 10 S 0.370 5.630 11 C -0.071 4.071 12 C -0.090 4.090 13 H 0.075 0.925 14 C -0.177 4.177 15 C -0.023 4.023 16 C -0.629 4.629 17 H 0.068 0.932 18 C -0.191 4.191 19 N -0.554 5.554 20 Si 0.898 3.102 21 H -0.216 1.216 22 H -0.211 1.211 23 H -0.215 1.215 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.177 0.823 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.024 0.976 42 H 0.020 0.980 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.398 4.688 8.702 19.147 hybrid contribution 0.779 1.685 1.449 2.355 sum -15.619 6.373 10.151 19.688 Atomic orbital electron populations 1.21853 0.94787 1.02309 1.00989 1.21794 0.95202 0.92422 0.94345 1.22482 1.02082 0.98090 1.01814 1.62225 1.16086 1.45927 1.00240 1.20561 1.01499 0.92225 0.86920 1.24396 0.97368 1.03708 1.01325 1.20135 0.99354 1.01581 0.96307 1.20121 0.97529 0.98302 1.00124 1.25569 0.98842 1.07605 1.04021 1.84133 1.17191 1.38394 1.23283 1.22398 0.85424 0.98411 1.00848 1.21064 0.98519 0.94207 0.95215 0.92518 1.21545 0.98686 0.96995 1.00464 1.19243 0.89979 0.96065 0.96980 1.22049 0.94387 1.33002 1.13492 0.93235 1.25799 0.92657 0.98417 1.02194 1.70748 1.33745 1.32472 1.18443 0.83549 0.75606 0.75996 0.75092 1.21599 1.21102 1.21505 0.93134 0.92469 0.91825 0.88800 0.92150 0.92215 0.92868 0.92949 0.89863 0.84713 0.84643 0.82311 0.91124 0.95192 0.92834 0.94464 0.93795 0.97618 0.98042 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.16 37.16 0.34 -1.22 16 2 C 0.07 0.94 2.80 -67.71 -0.19 0.75 16 3 C -0.19 -2.25 8.53 37.16 0.32 -1.93 16 4 N -0.52 -7.55 3.82 -228.08 -0.87 -8.42 16 5 C 0.12 1.47 4.07 -4.98 -0.02 1.45 16 6 C -0.15 -1.96 5.60 -36.00 -0.20 -2.16 16 7 C -0.14 -1.86 9.00 -41.21 -0.37 -2.23 16 8 C -0.13 -1.55 10.18 -41.21 -0.42 -1.97 16 9 C -0.22 -2.55 11.23 29.04 0.33 -2.22 16 10 S 0.11 1.28 23.33 -107.50 -2.51 -1.23 16 11 C 0.06 0.98 4.06 -3.82 -0.02 0.96 16 12 C -0.07 -1.48 2.27 -90.62 -0.21 -1.69 16 13 H 0.06 1.20 6.16 -51.93 -0.32 0.88 16 14 C -0.12 -2.43 8.89 37.16 0.33 -2.10 16 15 C 0.01 0.38 3.76 -27.89 -0.10 0.28 16 16 C -0.59 -16.88 8.41 -34.44 -0.29 -17.17 16 17 H 0.05 1.40 7.06 -52.49 -0.37 1.03 16 18 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 19 N -0.92 -28.52 13.65 55.43 0.76 -27.76 16 20 Si 1.07 25.80 29.90 -169.99 -5.08 20.72 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H 0.05 0.51 6.29 -51.93 -0.33 0.18 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.09 1.43 5.99 -51.93 -0.31 1.12 16 28 H 0.06 0.83 6.60 -51.93 -0.34 0.48 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.58 6.75 -51.93 -0.35 0.23 16 31 H 0.05 0.65 7.32 -51.93 -0.38 0.27 16 32 H 0.08 0.94 5.88 -51.93 -0.31 0.63 16 33 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.07 1.28 6.61 -51.93 -0.34 0.93 16 37 H 0.03 0.53 6.42 -51.93 -0.33 0.19 16 38 H 0.05 1.17 6.95 -51.93 -0.36 0.81 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.81 7.75 -51.92 -0.40 0.41 16 41 H 0.01 0.15 8.00 -51.93 -0.42 -0.26 16 42 H 0.00 0.04 8.01 -51.93 -0.42 -0.38 16 43 H 0.27 8.31 7.22 -40.82 -0.29 8.01 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -30.59 345.19 -10.13 -40.72 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -7.03 Total: -0.24 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: -0.60 Total: -28.99 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.12 Total: -36.18 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.72 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.51 Total: -1.23 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.59 -10.13 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602439740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.128 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds