Wall clock time and date at job start Tue Mar 31 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47145 * 2 1 4 4 N 1.46904 * 109.46994 * 120.00214 * 2 1 3 5 5 C 1.46893 * 110.99984 * 293.45455 * 4 2 1 6 6 C 1.50700 * 109.47017 * 160.07925 * 5 4 2 7 7 C 1.33395 * 125.20006 * 95.40345 * 6 5 4 8 8 C 1.38420 * 114.91915 * 179.97438 * 7 6 5 9 9 C 1.33395 * 114.92438 * 359.97438 * 8 7 6 10 10 S 1.75881 * 125.20626 * 275.09619 * 6 5 4 11 11 C 1.46901 * 110.99605 * 169.50780 * 4 2 1 12 12 C 1.53004 * 109.47192 * 293.95313 * 11 4 2 13 13 H 1.08996 * 109.47512 * 54.99739 * 12 11 4 14 14 C 1.53003 * 109.46922 * 294.99999 * 12 11 4 15 15 C 1.52998 * 109.47302 * 175.00480 * 12 11 4 16 16 C 1.50697 * 109.47125 * 184.99928 * 15 12 11 17 17 H 1.08001 * 120.00326 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00012 * 179.97438 * 16 15 12 19 19 N 1.31512 * 119.99954 * 0.27959 * 18 16 15 20 20 Si 1.86805 * 120.00081 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47362 * 89.99850 * 20 18 16 22 22 H 1.48500 * 109.46869 * 210.00484 * 20 18 16 23 23 H 1.48504 * 109.46845 * 329.99746 * 20 18 16 24 24 H 1.08995 * 109.47192 * 300.55574 * 1 2 3 25 25 H 1.08996 * 109.47078 * 60.55831 * 1 2 3 26 26 H 1.08998 * 109.46789 * 180.55698 * 1 2 3 27 27 H 1.09001 * 109.47155 * 240.00322 * 2 1 3 28 28 H 1.09000 * 109.47342 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47121 * 300.00606 * 3 2 1 30 30 H 1.09001 * 109.46831 * 60.00124 * 3 2 1 31 31 H 1.08997 * 109.47695 * 280.08283 * 5 4 2 32 32 H 1.09003 * 109.46944 * 40.08813 * 5 4 2 33 33 H 1.07995 * 122.54299 * 359.95372 * 7 6 5 34 34 H 1.08002 * 122.53996 * 180.02562 * 8 7 6 35 35 H 1.07997 * 125.20640 * 180.02562 * 9 8 7 36 36 H 1.09007 * 109.47208 * 173.95343 * 11 4 2 37 37 H 1.08999 * 109.47744 * 53.95184 * 11 4 2 38 38 H 1.09000 * 109.47418 * 179.97438 * 14 12 11 39 39 H 1.08999 * 109.47531 * 300.00317 * 14 12 11 40 40 H 1.09008 * 109.47042 * 59.99947 * 14 12 11 41 41 H 1.08998 * 109.47351 * 64.99446 * 15 12 11 42 42 H 1.09001 * 109.46990 * 304.99717 * 15 12 11 43 43 H 0.97005 * 120.00334 * 359.71542 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.6805 0.0578 2.4159 6 6 1.7411 -0.8630 3.6073 7 6 2.7927 -1.0066 4.4154 8 6 2.6159 -1.9123 5.4472 9 6 1.4207 -2.5039 5.4773 10 16 0.4337 -1.9070 4.1496 11 6 3.4665 -0.9322 1.1151 12 6 3.7548 -1.9189 -0.0182 13 1 3.3216 -1.5441 -0.9454 14 6 3.1384 -3.2779 0.3198 15 6 5.2675 -2.0731 -0.1877 16 6 5.5527 -2.9481 -1.3811 17 1 4.7366 -3.3540 -1.9605 18 6 6.8554 -3.2304 -1.7334 19 7 7.8491 -2.7407 -1.0247 20 14 7.2089 -4.3144 -3.2131 21 1 7.3251 -3.4698 -4.4290 22 1 8.4817 -5.0481 -2.9964 23 1 6.1008 -5.2871 -3.3901 24 1 -0.3633 0.5224 0.8849 25 1 -0.3633 0.5051 -0.8949 26 1 -0.3633 -1.0276 0.0100 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.3915 0.8730 2.5501 32 1 0.6738 0.4653 2.3226 33 1 3.7123 -0.4581 4.2752 34 1 3.3870 -2.1234 6.1733 35 1 1.1059 -3.2345 6.2077 36 1 3.8216 -1.3481 2.0581 37 1 3.9798 0.0087 0.9168 38 1 3.3434 -3.9808 -0.4877 39 1 3.5716 -3.6529 1.2470 40 1 2.0607 -3.1681 0.4406 41 1 5.6887 -2.5309 0.7073 42 1 5.7179 -1.0923 -0.3404 43 1 7.6656 -2.1774 -0.2565 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602439740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:30 Heat of formation + Delta-G solvation = -0.639972 kcal Electronic energy + Delta-G solvation = -20543.631635 eV Core-core repulsion = 17714.115456 eV Total energy + Delta-G solvation = -2829.516179 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.32821 -38.40582 -36.81592 -34.37230 -33.13118 -30.62627 -28.48452 -28.25673 -27.44029 -25.98437 -24.52197 -23.79150 -21.76254 -20.07154 -19.88186 -18.92444 -18.11235 -16.72615 -16.55028 -16.39947 -15.92931 -15.60231 -15.20571 -14.92710 -14.56952 -14.17373 -13.91601 -13.68616 -13.61075 -13.42672 -13.11673 -13.09780 -13.08251 -12.91971 -12.60324 -12.50396 -12.21274 -12.11934 -11.95088 -11.86437 -11.79527 -11.58435 -11.35098 -11.15538 -10.55520 -10.51706 -9.59610 -9.30425 -9.20086 -8.65196 -6.33872 0.11023 0.80114 1.16504 1.51459 1.60973 1.78378 1.84288 2.57233 2.99066 3.19043 3.81231 3.90647 4.01672 4.16529 4.22371 4.26732 4.27303 4.37181 4.46750 4.55422 4.67828 4.69767 4.72214 4.77214 4.79032 4.84786 4.92951 4.97766 5.05387 5.13882 5.21755 5.24651 5.31442 5.38680 5.38766 5.43131 5.48798 5.59537 5.64813 6.02668 6.13645 6.19145 6.23933 6.62675 7.46956 8.75316 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017509 B = 0.004639 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.749540 B = 6034.506289 C = 6866.222215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.067 3.933 3 C -0.180 4.180 4 N -0.523 5.523 5 C 0.120 3.880 6 C -0.168 4.168 7 C -0.155 4.155 8 C -0.146 4.146 9 C -0.221 4.221 10 S 0.115 5.885 11 C 0.073 3.927 12 C -0.062 4.062 13 H 0.054 0.946 14 C -0.107 4.107 15 C 0.019 3.981 16 C -0.602 4.602 17 H 0.051 0.949 18 C -0.042 4.042 19 N -0.942 5.942 20 Si 1.117 2.883 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.269 1.269 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.151 0.849 35 H 0.184 0.816 36 H 0.062 0.938 37 H 0.023 0.977 38 H 0.034 0.966 39 H 0.028 0.972 40 H 0.065 0.935 41 H -0.018 1.018 42 H -0.020 1.020 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.914 6.000 9.977 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.041 4.041 3 C -0.239 4.239 4 N -0.246 5.246 5 C -0.008 4.008 6 C -0.286 4.286 7 C -0.186 4.186 8 C -0.176 4.176 9 C -0.357 4.357 10 S 0.378 5.622 11 C -0.055 4.055 12 C -0.081 4.081 13 H 0.073 0.927 14 C -0.164 4.164 15 C -0.018 4.018 16 C -0.640 4.640 17 H 0.069 0.931 18 C -0.238 4.238 19 N -0.580 5.580 20 Si 0.939 3.061 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.194 1.194 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.149 0.851 34 H 0.168 0.832 35 H 0.201 0.799 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.001 0.999 42 H -0.001 1.001 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.441 4.580 8.629 20.868 hybrid contribution 1.375 1.743 1.532 2.697 sum -17.066 6.323 10.161 20.844 Atomic orbital electron populations 1.21792 0.92527 1.02361 1.02449 1.21852 0.96889 0.92618 0.92775 1.22420 1.00570 0.97622 1.03284 1.62166 1.13514 1.47239 1.01688 1.20596 1.02486 0.91990 0.85751 1.24516 0.97996 1.04473 1.01664 1.20314 0.99400 1.01985 0.96905 1.20332 0.98427 0.98437 1.00433 1.25925 0.98354 1.07429 1.03967 1.84049 1.16736 1.37987 1.23442 1.22029 0.87766 0.97000 0.98731 1.20883 0.94829 0.95696 0.96682 0.92742 1.21407 0.99871 0.95924 0.99183 1.19159 0.93395 0.94146 0.95120 1.22424 0.94561 1.32917 1.14064 0.93103 1.27377 0.92847 0.99169 1.04451 1.70889 1.34485 1.33720 1.18910 0.82939 0.76056 0.74916 0.72236 1.19788 1.20967 1.19417 0.91789 0.90894 0.92465 0.91096 0.94399 0.90857 0.91291 0.92798 0.87957 0.85075 0.83183 0.79893 0.91963 0.95840 0.94658 0.95272 0.91592 0.99936 1.00131 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.16 71.98 0.66 -1.94 16 2 C 0.07 1.68 2.80 44.92 0.13 1.80 16 3 C -0.18 -4.10 8.53 71.98 0.61 -3.49 16 4 N -0.52 -14.60 3.82 -875.51 -3.35 -17.95 16 5 C 0.12 2.85 4.07 85.56 0.35 3.19 16 6 C -0.17 -4.19 5.60 24.59 0.14 -4.05 16 7 C -0.15 -3.94 9.00 21.22 0.19 -3.75 16 8 C -0.15 -3.31 10.18 21.22 0.22 -3.10 16 9 C -0.22 -4.58 11.23 66.72 0.75 -3.83 16 10 S 0.11 2.53 23.33 -56.49 -1.32 1.21 16 11 C 0.07 2.55 4.06 86.30 0.35 2.90 16 12 C -0.06 -2.62 2.27 -10.79 -0.02 -2.65 16 13 H 0.05 2.33 6.16 -2.39 -0.01 2.32 16 14 C -0.11 -4.32 8.89 71.98 0.64 -3.68 16 15 C 0.02 1.03 3.76 29.85 0.11 1.14 16 16 C -0.60 -34.96 8.41 25.60 0.22 -34.74 16 17 H 0.05 2.89 7.06 -2.91 -0.02 2.87 16 18 C -0.04 -2.48 5.46 84.65 0.46 -2.01 16 19 N -0.94 -59.91 13.65 21.45 0.29 -59.62 16 20 Si 1.12 51.56 29.90 68.60 2.05 53.61 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H 0.06 1.08 6.29 -2.39 -0.02 1.06 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 2.12 5.99 -2.39 -0.01 2.10 16 28 H 0.04 1.02 6.60 -2.39 -0.02 1.01 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.34 6.75 -2.39 -0.02 1.33 16 31 H 0.05 1.27 7.32 -2.39 -0.02 1.25 16 32 H 0.10 2.03 5.88 -2.39 -0.01 2.01 16 33 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 34 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 35 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 36 H 0.06 2.29 6.61 -2.38 -0.02 2.28 16 37 H 0.02 0.85 6.42 -2.39 -0.02 0.84 16 38 H 0.03 1.53 6.95 -2.39 -0.02 1.51 16 39 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 2.37 7.75 -2.38 -0.02 2.35 16 41 H -0.02 -1.02 8.00 -2.39 -0.02 -1.04 16 42 H -0.02 -1.12 8.01 -2.39 -0.02 -1.14 16 43 H 0.25 16.37 7.22 -92.70 -0.67 15.70 16 Total: -1.00 -66.36 345.19 3.55 -62.81 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.07 Total: 14.14 kcal Atomic # 6 Polarization: -59.00 SS G_CDS: 4.80 Total: -54.20 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -3.05 Total: -77.57 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.05 Total: 53.61 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -1.32 Total: 1.21 kcal Total: -66.36 3.55 -62.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602439740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.170 kcal (2) G-P(sol) polarization free energy of solvation -66.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds