Wall clock time and date at job start Tue Mar 31 2020 05:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47164 * 2 1 4 4 N 1.46899 * 109.47402 * 120.00076 * 2 1 3 5 5 C 1.46899 * 111.00159 * 149.31103 * 4 2 1 6 6 C 1.50699 * 109.47076 * 286.12867 * 5 4 2 7 7 C 1.33383 * 125.20802 * 96.50779 * 6 5 4 8 8 C 1.38423 * 114.92516 * 179.97438 * 7 6 5 9 9 C 1.33392 * 114.91899 * 359.97438 * 8 7 6 10 10 S 1.75887 * 109.59343 * 359.75966 * 9 8 7 11 11 C 1.46899 * 110.99783 * 273.26744 * 4 2 1 12 12 C 1.52995 * 109.47580 * 77.20895 * 11 4 2 13 13 H 1.08996 * 109.47138 * 296.24297 * 12 11 4 14 14 C 1.53002 * 109.46977 * 56.23913 * 12 11 4 15 15 C 1.52998 * 109.47159 * 176.23668 * 12 11 4 16 16 C 1.50707 * 109.47000 * 175.00364 * 15 12 11 17 17 H 1.08007 * 119.99632 * 359.97438 * 16 15 12 18 18 C 1.37872 * 120.00059 * 180.02562 * 16 15 12 19 19 N 1.31517 * 120.00174 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99943 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47339 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47100 * 120.00060 * 20 18 16 23 23 H 1.48498 * 109.47042 * 240.00089 * 20 18 16 24 24 H 1.08999 * 109.46997 * 314.08440 * 1 2 3 25 25 H 1.09007 * 109.47123 * 74.07758 * 1 2 3 26 26 H 1.08998 * 109.47060 * 194.07675 * 1 2 3 27 27 H 1.09003 * 109.47320 * 239.99905 * 2 1 3 28 28 H 1.09000 * 109.47202 * 170.15923 * 3 2 1 29 29 H 1.09001 * 109.46652 * 290.15437 * 3 2 1 30 30 H 1.08994 * 109.47261 * 50.15601 * 3 2 1 31 31 H 1.09001 * 109.47261 * 46.12532 * 5 4 2 32 32 H 1.09000 * 109.47177 * 166.12737 * 5 4 2 33 33 H 1.07999 * 122.53639 * 359.95306 * 7 6 5 34 34 H 1.08004 * 122.53890 * 180.02562 * 8 7 6 35 35 H 1.08002 * 125.20027 * 180.02562 * 9 8 7 36 36 H 1.09003 * 109.46994 * 317.20663 * 11 4 2 37 37 H 1.09003 * 109.47078 * 197.21041 * 11 4 2 38 38 H 1.08998 * 109.47691 * 180.02562 * 14 12 11 39 39 H 1.09003 * 109.47283 * 59.99720 * 14 12 11 40 40 H 1.09012 * 109.46955 * 299.99846 * 14 12 11 41 41 H 1.09001 * 109.47456 * 294.99666 * 15 12 11 42 42 H 1.08995 * 109.47518 * 55.00629 * 15 12 11 43 43 H 0.96995 * 119.99987 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3071 -1.3502 0.9388 6 6 3.0824 -2.5763 0.0918 7 6 3.2123 -2.6290 -1.2346 8 6 2.9543 -3.8672 -1.7972 9 6 2.6154 -4.8201 -0.9276 10 16 2.6172 -4.1589 0.7023 11 6 2.1215 0.2321 2.3364 12 6 0.7273 0.4880 2.9121 13 1 0.1114 0.9874 2.1642 14 6 0.0819 -0.8448 3.2969 15 6 0.8430 1.3757 4.1529 16 6 -0.5359 1.7286 4.6484 17 1 -1.4075 1.3573 4.1297 18 6 -0.6846 2.5264 5.7629 19 7 0.3767 2.9790 6.3941 20 14 -2.3937 2.9645 6.3766 21 1 -3.4118 2.3342 5.4982 22 1 -2.5633 2.4676 7.7657 23 1 -2.5647 4.4394 6.3541 24 1 -0.3633 0.7150 0.7382 25 1 -0.3634 0.2819 -0.9883 26 1 -0.3633 -0.9968 0.2499 27 1 1.8934 -0.5139 -0.8900 28 1 3.1158 1.4476 0.1756 29 1 1.8273 1.9031 -0.9648 30 1 1.5404 2.0046 0.7890 31 1 3.9673 -0.6610 0.4123 32 1 3.7647 -1.6408 1.8845 33 1 3.4969 -1.7706 -1.8250 34 1 3.0231 -4.0481 -2.8598 35 1 2.3804 -5.8425 -1.1845 36 1 2.5546 1.1744 2.0007 37 1 2.7573 -0.2064 3.1055 38 1 -0.9115 -0.6626 3.7067 39 1 0.6979 -1.3442 4.0448 40 1 -0.0005 -1.4772 2.4129 41 1 1.3835 0.8404 4.9336 42 1 1.3820 2.2881 3.8980 43 1 0.2720 3.5405 7.1780 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602439741.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:32 Heat of formation + Delta-G solvation = 13.689769 kcal Electronic energy + Delta-G solvation = -20507.111402 eV Core-core repulsion = 17678.216608 eV Total energy + Delta-G solvation = -2828.894795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.33491 -38.41976 -36.26578 -34.07542 -33.35294 -30.75760 -28.89368 -28.24764 -27.07523 -25.94767 -24.58790 -23.60032 -21.07968 -20.34095 -19.93638 -18.41084 -17.92261 -17.13680 -16.61339 -16.31018 -16.16140 -15.32384 -14.90696 -14.68842 -14.31163 -14.18520 -13.80124 -13.55916 -13.54747 -13.44526 -13.21025 -13.14556 -12.84259 -12.73123 -12.59019 -12.33067 -12.23377 -12.13090 -12.00846 -11.84903 -11.67160 -11.50597 -11.20372 -10.88222 -10.72672 -10.49394 -9.54168 -9.29462 -9.09192 -8.15461 -6.23735 0.17390 0.84376 1.26052 1.39646 1.40514 1.53246 1.91420 2.43124 3.07486 3.18116 3.89367 3.97965 4.09884 4.27977 4.30912 4.34086 4.46191 4.46421 4.60754 4.64093 4.76942 4.81013 4.82137 4.86488 4.92750 4.97881 5.01270 5.06536 5.21010 5.27821 5.31123 5.41068 5.46098 5.48160 5.54478 5.61450 5.65651 5.68128 5.88283 5.98550 6.18355 6.30331 6.37685 6.92665 7.44333 8.96733 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027827 B = 0.003884 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.981142 B = 7207.271093 C = 7499.530671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.080 3.920 3 C -0.177 4.177 4 N -0.527 5.527 5 C 0.121 3.879 6 C -0.166 4.166 7 C -0.142 4.142 8 C -0.140 4.140 9 C -0.221 4.221 10 S 0.084 5.916 11 C 0.062 3.938 12 C -0.072 4.072 13 H 0.066 0.934 14 C -0.108 4.108 15 C 0.034 3.966 16 C -0.523 4.523 17 H 0.058 0.942 18 C -0.002 4.002 19 N -0.935 5.935 20 Si 0.957 3.043 21 H -0.263 1.263 22 H -0.281 1.281 23 H -0.279 1.279 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.149 0.851 34 H 0.159 0.841 35 H 0.181 0.819 36 H 0.046 0.954 37 H 0.055 0.945 38 H 0.031 0.969 39 H 0.028 0.972 40 H 0.065 0.935 41 H -0.015 1.015 42 H -0.014 1.014 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.082 -12.650 -18.312 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 C -0.235 4.235 4 N -0.251 5.251 5 C -0.008 4.008 6 C -0.284 4.284 7 C -0.174 4.174 8 C -0.170 4.170 9 C -0.356 4.356 10 S 0.347 5.653 11 C -0.066 4.066 12 C -0.090 4.090 13 H 0.084 0.916 14 C -0.165 4.165 15 C -0.004 4.004 16 C -0.562 4.562 17 H 0.077 0.923 18 C -0.198 4.198 19 N -0.577 5.577 20 Si 0.782 3.218 21 H -0.187 1.187 22 H -0.207 1.207 23 H -0.205 1.205 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.166 0.834 34 H 0.177 0.823 35 H 0.198 0.802 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.004 0.996 42 H 0.004 0.996 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.494 -13.528 -16.612 22.117 hybrid contribution 0.179 1.693 -0.575 1.797 sum 5.674 -11.836 -17.187 21.625 Atomic orbital electron populations 1.22009 0.94750 1.01881 1.01375 1.21720 0.95948 0.92529 0.92611 1.22394 1.00785 0.97903 1.02422 1.62164 1.26436 1.31333 1.05136 1.20542 0.90798 0.91212 0.98285 1.24386 1.08299 0.98112 0.97581 1.20343 1.04223 0.99512 0.93290 1.20384 1.02582 0.92137 1.01905 1.25924 1.09798 1.04788 0.95122 1.84565 1.67876 1.03077 1.09778 1.22247 0.97451 0.94870 0.91987 1.21150 0.95219 0.96109 0.96533 0.91628 1.21436 0.98800 0.96417 0.99890 1.19012 0.95308 0.93279 0.92792 1.21654 0.93720 1.29530 1.11246 0.92342 1.25908 1.00558 0.96217 0.97166 1.70106 1.30779 1.36146 1.20633 0.85511 0.80131 0.77933 0.78181 1.18659 1.20660 1.20501 0.93279 0.91524 0.92736 0.89286 0.92622 0.90879 0.93488 0.91813 0.90477 0.83390 0.82325 0.80184 0.93552 0.92625 0.95024 0.95314 0.91580 0.99628 0.99607 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 8.62 71.98 0.62 -3.16 16 2 C 0.08 1.98 2.66 44.92 0.12 2.10 16 3 C -0.18 -4.36 7.76 71.98 0.56 -3.80 16 4 N -0.53 -14.61 3.33 -875.52 -2.92 -17.53 16 5 C 0.12 2.87 5.40 85.56 0.46 3.33 16 6 C -0.17 -3.67 5.60 24.59 0.14 -3.54 16 7 C -0.14 -2.67 8.88 21.21 0.19 -2.48 16 8 C -0.14 -2.33 10.18 21.22 0.22 -2.12 16 9 C -0.22 -3.86 11.23 66.72 0.75 -3.11 16 10 S 0.08 1.85 23.33 -56.49 -1.32 0.53 16 11 C 0.06 2.11 3.98 86.30 0.34 2.45 16 12 C -0.07 -2.94 1.75 -10.80 -0.02 -2.96 16 13 H 0.07 2.71 4.48 -2.39 -0.01 2.70 16 14 C -0.11 -4.29 8.80 71.98 0.63 -3.66 16 15 C 0.03 1.78 4.45 29.85 0.13 1.92 16 16 C -0.52 -29.91 8.41 25.60 0.22 -29.69 16 17 H 0.06 3.25 7.06 -2.91 -0.02 3.22 16 18 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 19 N -0.94 -57.67 13.29 21.45 0.28 -57.39 16 20 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 H 0.05 1.53 5.05 -2.39 -0.01 1.51 16 25 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.05 1.52 7.60 -2.39 -0.02 1.50 16 27 H 0.09 1.93 6.01 -2.39 -0.01 1.92 16 28 H 0.05 1.30 7.23 -2.39 -0.02 1.28 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.42 6.11 -2.39 -0.01 1.40 16 31 H 0.06 1.35 7.58 -2.39 -0.02 1.33 16 32 H 0.08 1.91 7.62 -2.39 -0.02 1.89 16 33 H 0.15 2.29 7.84 -2.91 -0.02 2.27 16 34 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.05 1.57 5.11 -2.39 -0.01 1.56 16 37 H 0.06 1.96 7.59 -2.39 -0.02 1.94 16 38 H 0.03 1.34 6.95 -2.39 -0.02 1.32 16 39 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 2.34 6.74 -2.38 -0.02 2.33 16 41 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 42 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 43 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -64.04 342.11 3.87 -60.17 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.98 Total: 11.47 kcal Atomic # 6 Polarization: -49.15 SS G_CDS: 4.82 Total: -44.33 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -2.63 Total: -74.92 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -1.32 Total: 0.53 kcal Total: -64.04 3.87 -60.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602439741.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.855 kcal (2) G-P(sol) polarization free energy of solvation -64.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds