Wall clock time and date at job start Tue Mar 31 2020 05:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.46991 * 2 1 4 4 C 1.46901 * 110.99872 * 299.28800 * 3 2 1 5 5 C 1.53004 * 109.47382 * 293.94688 * 4 3 2 6 6 C 1.50699 * 109.47264 * 185.13724 * 5 4 3 7 7 C 1.33386 * 125.20235 * 90.00112 * 6 5 4 8 8 C 1.38424 * 114.91873 * 179.97438 * 7 6 5 9 9 C 1.33393 * 114.92207 * 359.97438 * 8 7 6 10 10 S 1.75879 * 125.19956 * 269.69292 * 6 5 4 11 11 C 1.46890 * 111.00257 * 63.24330 * 3 2 1 12 12 C 1.53002 * 109.47313 * 69.15014 * 11 3 2 13 13 H 1.09004 * 109.47184 * 303.09774 * 12 11 3 14 14 C 1.53003 * 109.47324 * 183.09785 * 12 11 3 15 15 C 1.52999 * 109.46989 * 63.09635 * 12 11 3 16 16 C 1.50698 * 109.47042 * 185.00142 * 15 12 11 17 17 H 1.07990 * 120.00289 * 0.02562 * 16 15 12 18 18 C 1.37887 * 119.99690 * 179.97438 * 16 15 12 19 19 N 1.31513 * 119.99827 * 179.72122 * 18 16 15 20 20 Si 1.86800 * 119.99961 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47098 * 269.71856 * 20 18 16 22 22 H 1.48501 * 109.47409 * 29.72568 * 20 18 16 23 23 H 1.48506 * 109.46735 * 149.72063 * 20 18 16 24 24 H 1.09000 * 109.46975 * 299.68137 * 1 2 3 25 25 H 1.08997 * 109.47271 * 59.68742 * 1 2 3 26 26 H 1.09008 * 109.46747 * 179.68611 * 1 2 3 27 27 H 1.08997 * 109.47087 * 239.99637 * 2 1 3 28 28 H 1.08996 * 109.47016 * 119.99987 * 2 1 3 29 29 H 1.08999 * 109.47201 * 53.94424 * 4 3 2 30 30 H 1.08993 * 109.47110 * 173.94171 * 4 3 2 31 31 H 1.09005 * 109.47136 * 305.13823 * 5 4 3 32 32 H 1.09001 * 109.47155 * 65.13498 * 5 4 3 33 33 H 1.08001 * 122.54286 * 359.95112 * 7 6 5 34 34 H 1.08002 * 122.54075 * 180.02562 * 8 7 6 35 35 H 1.08001 * 125.20065 * 180.02562 * 9 8 7 36 36 H 1.09004 * 109.47287 * 309.15423 * 11 3 2 37 37 H 1.09000 * 109.47333 * 189.15219 * 11 3 2 38 38 H 1.08996 * 109.47236 * 294.79354 * 14 12 11 39 39 H 1.08997 * 109.46747 * 54.79606 * 14 12 11 40 40 H 1.09003 * 109.46880 * 174.79292 * 14 12 11 41 41 H 1.09006 * 109.47035 * 64.99983 * 15 12 11 42 42 H 1.09005 * 109.47241 * 305.00419 * 15 12 11 43 43 H 0.97001 * 119.99943 * 180.27746 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5626 2.1049 -1.1961 5 6 2.2090 1.4905 -2.4394 6 6 1.8406 2.3059 -3.6521 7 6 2.5345 3.3445 -4.1201 8 6 2.0020 3.9398 -5.2506 9 6 0.8759 3.3844 -5.7010 10 16 0.4342 2.0286 -4.6712 11 6 1.6131 2.0872 1.2245 12 6 2.3689 1.5055 2.4209 13 1 2.1805 0.4337 2.4835 14 6 1.8893 2.1835 3.7059 15 6 3.8689 1.7501 2.2444 16 6 4.6230 1.0715 3.3587 17 1 4.0863 0.5204 4.1167 18 6 5.9985 1.1532 3.4098 19 7 6.6563 0.5656 4.3853 20 14 6.9269 2.1057 2.0983 21 1 7.2768 1.1945 0.9792 22 1 6.0729 3.2091 1.5899 23 1 8.1694 2.6709 2.6834 24 1 -0.3633 0.5089 0.8928 25 1 -0.3634 0.5187 -0.8871 26 1 -0.3633 -1.0277 -0.0056 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.4782 2.0275 -1.2746 30 1 1.8472 3.1543 -1.1195 31 1 3.2925 1.4852 -2.3206 32 1 1.8524 0.4684 -2.5668 33 1 3.4428 3.6946 -3.6522 34 1 2.4637 4.7892 -5.7321 35 1 0.3224 3.7142 -6.5677 36 1 0.5410 1.9618 1.3763 37 1 1.8449 3.1479 1.1291 38 1 2.1606 3.2389 3.6829 39 1 0.8063 2.0884 3.7843 40 1 2.3592 1.7061 4.5657 41 1 4.0678 2.8215 2.2708 42 1 4.1930 1.3439 1.2862 43 1 7.6236 0.6265 4.4236 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602448176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:55 Heat of formation + Delta-G solvation = 20.479426 kcal Electronic energy + Delta-G solvation = -20039.287171 eV Core-core repulsion = 17210.686798 eV Total energy + Delta-G solvation = -2828.600373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.81174 -37.81214 -34.89306 -32.69858 -31.91785 -29.82768 -28.00028 -27.38332 -25.09858 -24.37339 -23.09499 -22.10686 -20.09292 -19.34238 -18.57542 -17.28946 -16.63502 -15.91463 -15.69232 -15.40988 -14.35600 -14.17203 -13.77781 -13.47030 -13.24927 -13.06351 -12.82091 -12.60110 -12.33489 -12.18827 -12.14983 -11.94073 -11.82119 -11.52108 -11.21979 -11.04763 -10.95862 -10.88048 -10.79233 -10.49102 -10.15208 -9.81974 -9.53196 -9.32161 -8.92182 -8.74975 -8.63257 -8.40406 -7.88648 -5.92195 -3.87384 0.85325 1.48611 1.85451 2.61287 3.40919 3.47302 3.53797 4.12065 4.57643 4.80821 4.90840 4.96587 5.17424 5.19398 5.34434 5.40748 5.43550 5.44545 5.53104 5.54358 5.66213 5.72350 5.84989 5.94541 5.98393 6.04262 6.10980 6.16405 6.20171 6.23351 6.35691 6.36805 6.38981 6.50257 6.89223 7.01231 7.15982 7.39554 7.43571 7.57176 7.72488 7.96710 8.68373 9.14198 9.72444 11.21600 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.004201 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.228288 B = 6663.785420 C = 7642.682928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.044 3.956 3 N -0.527 5.527 4 C 0.058 3.942 5 C -0.049 4.049 6 C -0.158 4.158 7 C -0.145 4.145 8 C -0.130 4.130 9 C -0.222 4.222 10 S 0.084 5.916 11 C 0.058 3.942 12 C -0.074 4.074 13 H 0.061 0.939 14 C -0.133 4.133 15 C -0.001 4.001 16 C -0.511 4.511 17 H 0.069 0.931 18 C 0.063 3.937 19 N -0.910 5.910 20 Si 0.879 3.121 21 H -0.278 1.278 22 H -0.265 1.265 23 H -0.293 1.293 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.161 0.839 36 H 0.028 0.972 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.029 0.971 40 H 0.065 0.935 41 H 0.008 0.992 42 H 0.027 0.973 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.984 4.083 -18.351 23.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.084 4.084 3 N -0.249 5.249 4 C -0.070 4.070 5 C -0.089 4.089 6 C -0.275 4.275 7 C -0.175 4.175 8 C -0.160 4.160 9 C -0.358 4.358 10 S 0.347 5.653 11 C -0.069 4.069 12 C -0.093 4.093 13 H 0.080 0.920 14 C -0.191 4.191 15 C -0.038 4.038 16 C -0.549 4.549 17 H 0.087 0.913 18 C -0.136 4.136 19 N -0.550 5.550 20 Si 0.707 3.293 21 H -0.204 1.204 22 H -0.190 1.190 23 H -0.219 1.219 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.178 0.822 36 H 0.046 0.954 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.046 0.954 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.477 3.019 -18.304 23.532 hybrid contribution 0.869 1.581 -0.726 1.945 sum -13.608 4.600 -19.030 23.843 Atomic orbital electron populations 1.22429 0.98990 1.01974 1.01761 1.22232 0.92154 0.90709 1.03270 1.62138 1.59238 1.02025 1.01506 1.22109 0.97100 0.98337 0.89472 1.20210 1.02763 0.97192 0.88732 1.24566 0.98889 1.02051 1.02031 1.20209 1.02413 0.97094 0.97762 1.20194 0.96359 1.01941 0.97536 1.25555 1.02606 1.02000 1.05619 1.84271 1.27090 1.31688 1.22236 1.22337 0.96656 0.97970 0.89983 1.21028 0.97803 0.98966 0.91454 0.92032 1.21696 0.97914 1.00463 0.99015 1.19528 0.90679 0.96158 0.97474 1.21246 0.91463 1.32134 1.10045 0.91269 1.25014 0.97799 0.95327 0.95505 1.69927 1.07666 1.45044 1.32399 0.86780 0.79115 0.81083 0.82285 1.20442 1.18990 1.21903 0.92252 0.92899 0.92368 0.91100 0.89576 0.94621 0.90824 0.88705 0.90780 0.84075 0.84444 0.82183 0.95386 0.91604 0.93608 0.95148 0.91549 0.97376 0.95423 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.27 9.27 37.16 0.34 -1.92 16 2 C 0.04 0.61 5.67 -3.82 -0.02 0.59 16 3 N -0.53 -8.02 3.97 -234.63 -0.93 -8.96 16 4 C 0.06 0.75 4.71 -3.82 -0.02 0.73 16 5 C -0.05 -0.58 5.50 -27.88 -0.15 -0.74 16 6 C -0.16 -1.77 5.76 -36.00 -0.21 -1.98 16 7 C -0.15 -1.58 10.05 -41.21 -0.41 -1.99 16 8 C -0.13 -1.24 10.18 -41.21 -0.42 -1.66 16 9 C -0.22 -2.03 11.23 29.04 0.33 -1.71 16 10 S 0.08 0.84 23.33 -107.50 -2.51 -1.66 16 11 C 0.06 0.93 4.22 -3.83 -0.02 0.92 16 12 C -0.07 -1.43 2.29 -90.62 -0.21 -1.64 16 13 H 0.06 1.24 6.47 -51.93 -0.34 0.90 16 14 C -0.13 -2.46 8.92 37.16 0.33 -2.13 16 15 C 0.00 -0.02 3.45 -27.88 -0.10 -0.12 16 16 C -0.51 -14.53 9.03 -34.44 -0.31 -14.84 16 17 H 0.07 2.11 7.30 -52.49 -0.38 1.73 16 18 C 0.06 1.87 5.47 -17.82 -0.10 1.78 16 19 N -0.91 -28.51 13.96 55.43 0.77 -27.74 16 20 Si 0.88 22.39 27.47 -169.99 -4.67 17.72 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H 0.06 0.73 6.31 -51.93 -0.33 0.41 16 25 H 0.05 0.59 6.27 -51.93 -0.33 0.26 16 26 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.07 0.90 6.55 -51.93 -0.34 0.56 16 28 H 0.09 1.34 6.40 -51.93 -0.33 1.01 16 29 H 0.04 0.44 6.01 -51.93 -0.31 0.13 16 30 H 0.07 0.98 7.89 -51.93 -0.41 0.57 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 0.83 6.79 -51.93 -0.35 0.48 16 33 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.03 0.41 5.99 -51.93 -0.31 0.10 16 37 H 0.07 1.07 7.87 -51.93 -0.41 0.66 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 1.36 7.11 -51.93 -0.37 0.99 16 41 H 0.01 0.20 7.20 -51.93 -0.37 -0.18 16 42 H 0.03 0.67 6.98 -51.93 -0.36 0.31 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -30.75 345.42 -10.16 -40.92 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.07 Total: -0.77 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -0.96 Total: -24.71 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.16 Total: -36.70 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.67 Total: 17.72 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.66 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.75 -10.16 -40.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602448176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.395 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds