Wall clock time and date at job start Tue Mar 31 2020 05:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.46991 * 2 1 4 4 C 1.46901 * 110.99872 * 299.28800 * 3 2 1 5 5 C 1.53004 * 109.47382 * 293.94688 * 4 3 2 6 6 C 1.50699 * 109.47264 * 185.13724 * 5 4 3 7 7 C 1.33386 * 125.20235 * 90.00112 * 6 5 4 8 8 C 1.38424 * 114.91873 * 179.97438 * 7 6 5 9 9 C 1.33393 * 114.92207 * 359.97438 * 8 7 6 10 10 S 1.75879 * 125.19956 * 269.69292 * 6 5 4 11 11 C 1.46890 * 111.00257 * 63.24330 * 3 2 1 12 12 C 1.53002 * 109.47313 * 69.15014 * 11 3 2 13 13 H 1.09004 * 109.47184 * 303.09774 * 12 11 3 14 14 C 1.53003 * 109.47324 * 183.09785 * 12 11 3 15 15 C 1.52999 * 109.46989 * 63.09635 * 12 11 3 16 16 C 1.50698 * 109.47042 * 185.00142 * 15 12 11 17 17 H 1.07990 * 120.00289 * 0.02562 * 16 15 12 18 18 C 1.37887 * 119.99690 * 179.97438 * 16 15 12 19 19 N 1.31513 * 119.99827 * 179.72122 * 18 16 15 20 20 Si 1.86800 * 119.99961 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47098 * 269.71856 * 20 18 16 22 22 H 1.48501 * 109.47409 * 29.72568 * 20 18 16 23 23 H 1.48506 * 109.46735 * 149.72063 * 20 18 16 24 24 H 1.09000 * 109.46975 * 299.68137 * 1 2 3 25 25 H 1.08997 * 109.47271 * 59.68742 * 1 2 3 26 26 H 1.09008 * 109.46747 * 179.68611 * 1 2 3 27 27 H 1.08997 * 109.47087 * 239.99637 * 2 1 3 28 28 H 1.08996 * 109.47016 * 119.99987 * 2 1 3 29 29 H 1.08999 * 109.47201 * 53.94424 * 4 3 2 30 30 H 1.08993 * 109.47110 * 173.94171 * 4 3 2 31 31 H 1.09005 * 109.47136 * 305.13823 * 5 4 3 32 32 H 1.09001 * 109.47155 * 65.13498 * 5 4 3 33 33 H 1.08001 * 122.54286 * 359.95112 * 7 6 5 34 34 H 1.08002 * 122.54075 * 180.02562 * 8 7 6 35 35 H 1.08001 * 125.20065 * 180.02562 * 9 8 7 36 36 H 1.09004 * 109.47287 * 309.15423 * 11 3 2 37 37 H 1.09000 * 109.47333 * 189.15219 * 11 3 2 38 38 H 1.08996 * 109.47236 * 294.79354 * 14 12 11 39 39 H 1.08997 * 109.46747 * 54.79606 * 14 12 11 40 40 H 1.09003 * 109.46880 * 174.79292 * 14 12 11 41 41 H 1.09006 * 109.47035 * 64.99983 * 15 12 11 42 42 H 1.09005 * 109.47241 * 305.00419 * 15 12 11 43 43 H 0.97001 * 119.99943 * 180.27746 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5626 2.1049 -1.1961 5 6 2.2090 1.4905 -2.4394 6 6 1.8406 2.3059 -3.6521 7 6 2.5345 3.3445 -4.1201 8 6 2.0020 3.9398 -5.2506 9 6 0.8759 3.3844 -5.7010 10 16 0.4342 2.0286 -4.6712 11 6 1.6131 2.0872 1.2245 12 6 2.3689 1.5055 2.4209 13 1 2.1805 0.4337 2.4835 14 6 1.8893 2.1835 3.7059 15 6 3.8689 1.7501 2.2444 16 6 4.6230 1.0715 3.3587 17 1 4.0863 0.5204 4.1167 18 6 5.9985 1.1532 3.4098 19 7 6.6563 0.5656 4.3853 20 14 6.9269 2.1057 2.0983 21 1 7.2768 1.1945 0.9792 22 1 6.0729 3.2091 1.5899 23 1 8.1694 2.6709 2.6834 24 1 -0.3633 0.5089 0.8928 25 1 -0.3634 0.5187 -0.8871 26 1 -0.3633 -1.0277 -0.0056 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.4782 2.0275 -1.2746 30 1 1.8472 3.1543 -1.1195 31 1 3.2925 1.4852 -2.3206 32 1 1.8524 0.4684 -2.5668 33 1 3.4428 3.6946 -3.6522 34 1 2.4637 4.7892 -5.7321 35 1 0.3224 3.7142 -6.5677 36 1 0.5410 1.9618 1.3763 37 1 1.8449 3.1479 1.1291 38 1 2.1606 3.2389 3.6829 39 1 0.8063 2.0884 3.7843 40 1 2.3592 1.7061 4.5657 41 1 4.0678 2.8215 2.2708 42 1 4.1930 1.3439 1.2862 43 1 7.6236 0.6265 4.4236 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602448176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:55 Heat of formation + Delta-G solvation = 3.762433 kcal Electronic energy + Delta-G solvation = -20040.012074 eV Core-core repulsion = 17210.686798 eV Total energy + Delta-G solvation = -2829.325276 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.92681 -38.66809 -36.46414 -34.33564 -33.37303 -30.90542 -29.66327 -28.62416 -26.30136 -25.36421 -24.55787 -23.42836 -21.32493 -20.10095 -20.07510 -18.85669 -18.07803 -17.00046 -16.76282 -16.39898 -16.11820 -15.32371 -15.12891 -14.96988 -14.50195 -14.19451 -14.08463 -13.73086 -13.57229 -13.50402 -13.23655 -13.01566 -12.94769 -12.88310 -12.74882 -12.53835 -12.22307 -12.15032 -11.91347 -11.75800 -11.68204 -11.43099 -11.37498 -11.04609 -10.87225 -10.66822 -9.54715 -9.37484 -9.02692 -8.21476 -6.21306 0.09763 0.73787 1.11566 1.38660 1.39154 1.52511 1.86059 2.42123 3.02967 3.15360 3.92123 3.98598 4.08969 4.19518 4.27858 4.31105 4.36635 4.39581 4.50307 4.54656 4.66319 4.71497 4.72849 4.74756 4.85018 4.89263 4.97190 5.03502 5.13013 5.18467 5.20219 5.27828 5.33786 5.43285 5.45741 5.51459 5.61494 5.65783 5.77329 5.82921 6.26709 6.31016 6.41719 6.86806 7.42083 8.95582 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.004201 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.228288 B = 6663.785420 C = 7642.682928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.044 3.956 3 N -0.547 5.547 4 C 0.066 3.934 5 C -0.042 4.042 6 C -0.177 4.177 7 C -0.152 4.152 8 C -0.142 4.142 9 C -0.217 4.217 10 S 0.086 5.914 11 C 0.068 3.932 12 C -0.070 4.070 13 H 0.050 0.950 14 C -0.129 4.129 15 C 0.008 3.992 16 C -0.513 4.513 17 H 0.032 0.968 18 C 0.001 3.999 19 N -0.957 5.957 20 Si 0.947 3.053 21 H -0.270 1.270 22 H -0.250 1.250 23 H -0.289 1.289 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.185 0.815 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.034 0.966 41 H 0.005 0.995 42 H 0.024 0.976 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.403 5.423 -20.979 26.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.084 4.084 3 N -0.271 5.271 4 C -0.063 4.063 5 C -0.081 4.081 6 C -0.295 4.295 7 C -0.182 4.182 8 C -0.172 4.172 9 C -0.352 4.352 10 S 0.349 5.651 11 C -0.059 4.059 12 C -0.089 4.089 13 H 0.068 0.932 14 C -0.187 4.187 15 C -0.029 4.029 16 C -0.551 4.551 17 H 0.050 0.950 18 C -0.194 4.194 19 N -0.600 5.600 20 Si 0.771 3.229 21 H -0.196 1.196 22 H -0.173 1.173 23 H -0.215 1.215 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.159 0.841 34 H 0.175 0.825 35 H 0.203 0.797 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.023 0.977 42 H 0.043 0.957 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.919 4.358 -20.942 26.664 hybrid contribution 1.271 1.110 0.118 1.692 sum -14.648 5.469 -20.824 26.041 Atomic orbital electron populations 1.22328 0.97086 1.02887 1.01900 1.22198 0.93728 0.89921 1.02520 1.62072 1.60295 1.02735 1.01948 1.22066 0.97680 0.97780 0.88733 1.20069 1.01785 0.97535 0.88756 1.24528 0.99984 1.02561 1.02394 1.20414 1.02470 0.97065 0.98244 1.20414 0.96703 1.02699 0.97344 1.25916 1.02402 1.01055 1.05838 1.84234 1.26414 1.32252 1.22217 1.22126 0.97153 0.97696 0.88932 1.20926 0.95391 0.98814 0.93807 0.93168 1.21627 0.99807 1.00044 0.97173 1.19408 0.93284 0.95011 0.95237 1.21589 0.91807 1.31433 1.10319 0.94952 1.25936 0.98999 0.96580 0.97881 1.70080 1.08093 1.47077 1.34710 0.85704 0.77760 0.80040 0.79350 1.19576 1.17340 1.21516 0.92736 0.91928 0.91171 0.90215 0.91997 0.93593 0.91278 0.90098 0.90379 0.84083 0.82518 0.79745 0.93301 0.91388 0.93245 0.91810 0.94709 0.97653 0.95724 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.89 9.27 71.98 0.67 -3.23 16 2 C 0.04 1.17 5.67 86.30 0.49 1.66 16 3 N -0.55 -15.88 3.97 -896.25 -3.56 -19.44 16 4 C 0.07 1.56 4.71 86.30 0.41 1.97 16 5 C -0.04 -0.93 5.50 29.85 0.16 -0.77 16 6 C -0.18 -3.68 5.76 24.59 0.14 -3.54 16 7 C -0.15 -3.04 10.05 21.22 0.21 -2.83 16 8 C -0.14 -2.37 10.18 21.22 0.22 -2.15 16 9 C -0.22 -3.36 11.23 66.72 0.75 -2.61 16 10 S 0.09 1.53 23.33 -56.49 -1.32 0.21 16 11 C 0.07 2.08 4.22 86.31 0.36 2.44 16 12 C -0.07 -2.72 2.29 -10.79 -0.02 -2.74 16 13 H 0.05 2.04 6.47 -2.39 -0.02 2.03 16 14 C -0.13 -4.69 8.92 71.98 0.64 -4.04 16 15 C 0.01 0.38 3.45 29.85 0.10 0.49 16 16 C -0.51 -30.02 9.03 25.60 0.23 -29.79 16 17 H 0.03 2.07 7.30 -2.92 -0.02 2.05 16 18 C 0.00 0.09 5.47 84.66 0.46 0.55 16 19 N -0.96 -61.66 13.96 21.45 0.30 -61.36 16 20 Si 0.95 46.37 27.47 68.60 1.88 48.26 16 21 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.25 -11.50 6.54 99.48 0.65 -10.85 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 24 H 0.05 1.21 6.31 -2.39 -0.02 1.20 16 25 H 0.06 1.21 6.27 -2.39 -0.01 1.20 16 26 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.08 1.94 6.55 -2.39 -0.02 1.92 16 28 H 0.06 1.93 6.40 -2.39 -0.02 1.91 16 29 H 0.05 1.01 6.01 -2.39 -0.01 0.99 16 30 H 0.07 1.71 7.89 -2.39 -0.02 1.69 16 31 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.08 1.64 6.79 -2.39 -0.02 1.62 16 33 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 34 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.19 1.85 8.06 -2.91 -0.02 1.82 16 36 H 0.05 1.30 5.99 -2.39 -0.01 1.29 16 37 H 0.07 2.05 7.87 -2.39 -0.02 2.03 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.03 1.45 7.11 -2.39 -0.02 1.44 16 41 H 0.01 0.25 7.20 -2.38 -0.02 0.23 16 42 H 0.02 1.19 6.98 -2.38 -0.02 1.17 16 43 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -67.02 345.42 3.04 -63.97 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.91 Total: 12.95 kcal Atomic # 6 Polarization: -49.41 SS G_CDS: 4.83 Total: -44.59 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -3.26 Total: -80.80 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.88 Total: 48.26 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.32 Total: 0.21 kcal Total: -67.02 3.04 -63.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602448176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.735 kcal (2) G-P(sol) polarization free energy of solvation -67.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds