Wall clock time and date at job start Tue Mar 31 2020 05:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47465 * 2 1 4 4 C 1.46896 * 111.00348 * 195.97108 * 3 2 1 5 5 C 1.52997 * 109.47344 * 66.04308 * 4 3 2 6 6 C 1.50700 * 109.47173 * 180.02562 * 5 4 3 7 7 C 1.33390 * 125.20429 * 89.99765 * 6 5 4 8 8 C 1.38422 * 114.92119 * 179.97438 * 7 6 5 9 9 C 1.33391 * 114.92201 * 0.02562 * 8 7 6 10 10 S 1.75884 * 109.59150 * 359.75758 * 9 8 7 11 11 C 1.46899 * 110.99753 * 72.01074 * 3 2 1 12 12 C 1.53001 * 109.46874 * 199.80237 * 11 3 2 13 13 H 1.08999 * 109.47092 * 304.43334 * 12 11 3 14 14 C 1.53001 * 109.47277 * 64.43285 * 12 11 3 15 15 C 1.53002 * 109.47148 * 184.43577 * 12 11 3 16 16 C 1.50705 * 109.47123 * 175.00138 * 15 12 11 17 17 H 1.07994 * 120.00413 * 359.97438 * 16 15 12 18 18 C 1.37877 * 119.99849 * 179.97438 * 16 15 12 19 19 N 1.31522 * 119.99691 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00117 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47024 * 60.00303 * 20 18 16 22 22 H 1.48500 * 109.47494 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47272 * 300.00350 * 20 18 16 24 24 H 1.08990 * 109.47189 * 61.27517 * 1 2 3 25 25 H 1.08993 * 109.46920 * 181.28286 * 1 2 3 26 26 H 1.09001 * 109.46950 * 301.27691 * 1 2 3 27 27 H 1.09002 * 109.46816 * 240.00125 * 2 1 3 28 28 H 1.09000 * 109.47375 * 120.00072 * 2 1 3 29 29 H 1.09005 * 109.46921 * 306.04431 * 4 3 2 30 30 H 1.08998 * 109.47093 * 186.04955 * 4 3 2 31 31 H 1.09000 * 109.46955 * 299.99906 * 5 4 3 32 32 H 1.08996 * 109.47175 * 60.00161 * 5 4 3 33 33 H 1.08001 * 122.54201 * 359.95469 * 7 6 5 34 34 H 1.07998 * 122.53871 * 180.02562 * 8 7 6 35 35 H 1.07998 * 125.20300 * 180.02562 * 9 8 7 36 36 H 1.08999 * 109.47521 * 319.80131 * 11 3 2 37 37 H 1.08998 * 109.46829 * 79.80340 * 11 3 2 38 38 H 1.08999 * 109.47107 * 65.04561 * 14 12 11 39 39 H 1.09002 * 109.47357 * 185.04096 * 14 12 11 40 40 H 1.08994 * 109.46932 * 305.04218 * 14 12 11 41 41 H 1.08999 * 109.46863 * 294.99944 * 15 12 11 42 42 H 1.09001 * 109.47311 * 54.99498 * 15 12 11 43 43 H 0.97007 * 119.99611 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4383 1.4418 -0.3773 5 6 3.5968 0.9997 -1.8334 6 6 5.0522 1.0574 -2.2203 7 6 5.9227 0.0551 -2.0904 8 6 7.2089 0.3410 -2.5148 9 6 7.3830 1.5756 -2.9888 10 16 5.8612 2.4545 -2.9182 11 6 1.7959 2.0224 1.3044 12 6 1.8440 3.5432 1.1437 13 1 2.7903 3.8304 0.6851 14 6 0.6866 3.9989 0.2529 15 6 1.7215 4.2054 2.5176 16 6 1.8917 5.6959 2.3739 17 1 2.0700 6.1277 1.4002 18 6 1.8200 6.5083 3.4856 19 7 1.6024 5.9824 4.6713 20 14 2.0317 8.3556 3.3076 21 1 0.9806 8.8896 2.4047 22 1 1.9114 8.9984 4.6409 23 1 3.3706 8.6476 2.7357 24 1 -0.3633 0.4939 -0.9011 25 1 -0.3633 -1.0274 0.0230 26 1 -0.3633 0.5335 0.8783 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.0129 0.7779 0.2686 30 1 3.8033 2.4628 -0.2658 31 1 3.2319 -0.0214 -1.9449 32 1 3.0222 1.6635 -2.4793 33 1 5.6452 -0.9065 -1.6846 34 1 8.0107 -0.3809 -2.4658 35 1 8.3148 1.9732 -3.3630 36 1 0.8196 1.7285 1.6897 37 1 2.5719 1.7060 2.0013 38 1 -0.2597 3.7922 0.7527 39 1 0.7721 5.0692 0.0651 40 1 0.7228 3.4599 -0.6938 41 1 0.7390 3.9908 2.9379 42 1 2.4935 3.8136 3.1799 43 1 1.5515 6.5541 5.4534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602448177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:57 Heat of formation + Delta-G solvation = 12.871096 kcal Electronic energy + Delta-G solvation = -19819.389738 eV Core-core repulsion = 16990.459443 eV Total energy + Delta-G solvation = -2828.930295 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.60779 -37.65395 -34.70758 -32.87170 -32.05017 -30.05068 -27.76829 -26.69501 -25.31530 -23.90183 -22.98487 -22.27701 -20.41398 -19.29076 -18.85661 -17.20322 -16.29975 -15.68034 -15.42777 -14.92279 -14.62687 -14.39327 -13.81511 -13.73213 -13.23795 -12.88304 -12.79609 -12.47434 -12.34699 -12.16023 -11.94499 -11.65615 -11.53061 -11.36481 -11.29177 -11.01314 -10.82639 -10.78848 -10.61360 -10.46674 -10.24102 -10.20033 -9.53976 -9.06962 -8.93291 -8.69890 -8.53926 -8.28604 -7.99432 -5.93817 -3.94598 0.92293 1.57560 1.95684 2.65159 3.37132 3.41205 3.44006 4.08471 4.51583 4.82679 4.94281 5.00804 5.19094 5.24065 5.33282 5.41403 5.42099 5.46161 5.58631 5.69796 5.71134 5.85263 5.91013 5.97961 6.08902 6.11556 6.13983 6.21442 6.23651 6.35712 6.42739 6.46751 6.60958 6.77585 7.07388 7.19760 7.25642 7.42894 7.47867 7.73771 7.90431 8.06754 8.51327 9.11648 9.68559 11.17749 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014154 B = 0.004198 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.751470 B = 6668.512034 C = 8103.662408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 N -0.534 5.534 4 C 0.060 3.940 5 C -0.047 4.047 6 C -0.162 4.162 7 C -0.148 4.148 8 C -0.134 4.134 9 C -0.223 4.223 10 S 0.106 5.894 11 C 0.059 3.941 12 C -0.078 4.078 13 H 0.054 0.946 14 C -0.121 4.121 15 C 0.027 3.973 16 C -0.511 4.511 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.032 0.968 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.161 0.839 36 H 0.071 0.929 37 H 0.029 0.971 38 H 0.038 0.962 39 H 0.049 0.951 40 H 0.044 0.956 41 H 0.015 0.985 42 H 0.011 0.989 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.313 -13.889 -14.762 21.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 N -0.259 5.259 4 C -0.068 4.068 5 C -0.086 4.086 6 C -0.280 4.280 7 C -0.178 4.178 8 C -0.165 4.165 9 C -0.359 4.359 10 S 0.370 5.630 11 C -0.068 4.068 12 C -0.097 4.097 13 H 0.072 0.928 14 C -0.178 4.178 15 C -0.010 4.010 16 C -0.549 4.549 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.178 0.822 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.580 -12.120 -15.329 20.322 hybrid contribution 1.204 -0.816 1.106 1.827 sum 6.784 -12.936 -14.223 20.387 Atomic orbital electron populations 1.21774 0.95026 1.00756 1.02870 1.22122 0.96214 0.89774 1.00107 1.62048 1.16560 1.15921 1.31346 1.22100 0.88970 1.02031 0.93716 1.20207 0.88346 1.02843 0.97253 1.24566 1.00419 0.96787 1.06268 1.20098 0.92821 1.00300 1.04613 1.20135 0.97645 0.96780 1.01899 1.25616 1.01836 0.98564 1.09891 1.84501 1.01373 1.16131 1.61001 1.22360 1.00394 0.96584 0.87468 1.21178 0.98263 0.91003 0.99271 0.92791 1.21559 0.97543 1.00417 0.98295 1.19130 0.96910 0.94911 0.90080 1.21201 1.48261 0.92112 0.93343 0.92656 1.25012 0.95572 0.98500 0.95424 1.69963 1.50208 1.35209 0.98404 0.86707 0.78669 0.85870 0.77050 1.20272 1.21403 1.20322 0.92017 0.92977 0.92301 0.91255 0.95315 0.94975 0.89903 0.90161 0.89824 0.84609 0.84613 0.82155 0.91087 0.95246 0.94297 0.93144 0.93744 0.96668 0.97065 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.00 37.16 0.37 -1.32 16 2 C 0.05 0.56 5.55 -3.82 -0.02 0.53 16 3 N -0.53 -7.76 3.74 -234.63 -0.88 -8.63 16 4 C 0.06 0.83 4.77 -3.83 -0.02 0.81 16 5 C -0.05 -0.54 5.67 -27.88 -0.16 -0.70 16 6 C -0.16 -1.87 5.76 -36.00 -0.21 -2.08 16 7 C -0.15 -1.57 10.05 -41.21 -0.41 -1.99 16 8 C -0.13 -1.32 10.18 -41.21 -0.42 -1.74 16 9 C -0.22 -2.24 11.23 29.04 0.33 -1.91 16 10 S 0.11 1.21 23.33 -107.50 -2.51 -1.30 16 11 C 0.06 1.03 4.22 -3.82 -0.02 1.01 16 12 C -0.08 -1.62 2.39 -90.62 -0.22 -1.84 16 13 H 0.05 1.15 6.68 -51.93 -0.35 0.80 16 14 C -0.12 -2.37 8.86 37.16 0.33 -2.04 16 15 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 16 C -0.51 -14.46 8.47 -34.44 -0.29 -14.75 16 17 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 20 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.76 6.50 -51.93 -0.34 0.42 16 27 H 0.07 0.73 5.94 -51.93 -0.31 0.42 16 28 H 0.03 0.35 8.05 -51.93 -0.42 -0.06 16 29 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 30 H 0.08 1.30 6.58 -51.93 -0.34 0.95 16 31 H 0.08 0.81 6.28 -51.93 -0.33 0.49 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.07 1.24 6.23 -51.93 -0.32 0.91 16 37 H 0.03 0.53 8.00 -51.93 -0.42 0.12 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 1.05 7.10 -51.93 -0.37 0.68 16 40 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 41 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -29.97 353.75 -10.61 -40.58 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -7.31 Total: -2.47 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -0.96 Total: -23.92 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: -0.14 Total: -35.14 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.51 Total: -1.30 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.97 -10.61 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602448177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.452 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds