Wall clock time and date at job start Tue Mar 31 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47297 * 2 1 4 4 C 1.36003 * 117.00203 * 179.97438 * 3 2 1 5 5 C 1.38512 * 120.06595 * 0.02562 * 4 3 2 6 6 C 1.38458 * 119.99495 * 179.97438 * 5 4 3 7 7 F 1.35097 * 119.93564 * 179.97438 * 6 5 4 8 8 C 1.38443 * 120.12921 * 359.97438 * 6 5 4 9 9 C 1.38242 * 120.13413 * 359.74910 * 8 6 5 10 10 C 1.38685 * 120.00220 * 0.50864 * 9 8 6 11 11 N 1.40117 * 120.06632 * 179.76480 * 10 9 8 12 12 C 1.46501 * 119.99713 * 359.72549 * 11 10 9 13 13 C 1.52999 * 109.47135 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.46716 * 55.00244 * 13 12 11 15 15 C 1.52997 * 109.47317 * 295.00335 * 13 12 11 16 16 C 1.52992 * 109.46961 * 174.99874 * 13 12 11 17 17 C 1.50707 * 109.46966 * 185.00310 * 16 13 12 18 18 H 1.07991 * 119.99895 * 0.02562 * 17 16 13 19 19 C 1.37881 * 120.00104 * 180.02562 * 17 16 13 20 20 N 1.31516 * 119.99811 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00175 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47556 * 90.00047 * 21 19 17 23 23 H 1.48504 * 109.47118 * 210.00306 * 21 19 17 24 24 H 1.48508 * 109.46863 * 330.00026 * 21 19 17 25 25 H 1.08997 * 109.47447 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47175 * 299.99550 * 1 2 3 27 27 H 1.08995 * 109.46953 * 59.99929 * 1 2 3 28 28 H 1.09001 * 109.47219 * 239.99699 * 2 1 3 29 29 H 1.09007 * 109.47357 * 119.99920 * 2 1 3 30 30 H 1.07998 * 120.00196 * 359.94940 * 5 4 3 31 31 H 1.08008 * 119.93090 * 180.02562 * 8 6 5 32 32 H 1.07997 * 119.99951 * 180.27390 * 9 8 6 33 33 H 0.96997 * 119.99928 * 179.71910 * 11 10 9 34 34 H 1.09006 * 109.47030 * 59.99354 * 12 11 10 35 35 H 1.08997 * 109.47272 * 300.00270 * 12 11 10 36 36 H 1.09002 * 109.47153 * 299.99641 * 15 13 12 37 37 H 1.09001 * 109.46832 * 179.97438 * 15 13 12 38 38 H 1.09004 * 109.47261 * 59.99813 * 15 13 12 39 39 H 1.08996 * 109.47729 * 305.00119 * 16 13 12 40 40 H 1.09001 * 109.47563 * 65.00698 * 16 13 12 41 41 H 0.97004 * 120.00016 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.1997 0.4280 0.0005 6 6 5.5721 0.6111 0.0005 7 9 6.3952 -0.4602 0.0010 8 6 6.1025 1.8899 0.0000 9 6 5.2641 2.9890 -0.0057 10 6 3.8886 2.8120 -0.0003 11 7 3.0376 3.9251 -0.0012 12 6 3.6007 5.2776 -0.0017 13 6 2.4650 6.3028 -0.0032 14 1 1.7997 6.1093 0.8383 15 6 1.6788 6.1912 -1.3110 16 6 3.0493 7.7112 0.1220 17 6 1.9283 8.7111 0.2441 18 1 0.9019 8.3755 0.2338 19 6 2.2132 10.0544 0.3689 20 7 3.4631 10.4631 0.3809 21 14 0.8238 11.2936 0.5209 22 1 0.4867 11.4860 1.9543 23 1 1.2500 12.5896 -0.0657 24 1 -0.3700 10.7903 -0.2051 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7881 -0.5705 0.0009 31 1 7.1736 2.0290 -0.0004 32 1 5.6803 3.9856 -0.0106 33 1 2.0757 3.8002 -0.0015 34 1 4.2151 5.4150 -0.8915 35 1 4.2144 5.4160 0.8884 36 1 2.3441 6.3847 -2.1525 37 1 0.8695 6.9213 -1.3118 38 1 1.2626 5.1877 -1.4002 39 1 3.6819 7.7648 1.0080 40 1 3.6436 7.9381 -0.7631 41 1 3.6636 11.4081 0.4691 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602491457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:42 Heat of formation + Delta-G solvation = -79.815167 kcal Electronic energy + Delta-G solvation = -21510.771333 eV Core-core repulsion = 18111.608684 eV Total energy + Delta-G solvation = -3399.162649 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.72003 -40.26105 -37.83708 -36.42154 -33.87842 -32.20316 -31.83684 -30.07019 -28.48724 -26.82542 -25.73387 -24.22362 -22.86280 -22.27562 -21.19389 -19.42556 -18.50576 -17.12249 -16.66779 -16.33804 -16.31178 -15.89356 -15.38718 -14.65679 -14.59128 -14.48954 -14.22939 -14.04164 -13.48833 -13.00128 -12.93110 -12.69930 -12.51897 -12.46224 -12.17576 -11.79249 -11.52495 -11.49919 -11.20721 -10.94350 -10.91804 -10.79741 -10.41186 -10.35659 -9.99475 -9.62469 -9.31676 -9.06529 -8.69426 -8.38358 -7.00523 -6.03070 -4.04804 1.24509 1.41344 3.01640 3.29947 3.36654 3.39193 3.67592 3.68404 4.39167 4.43902 4.63692 4.69235 4.82318 4.96747 5.01506 5.10013 5.31729 5.33052 5.49903 5.54695 5.55300 5.67197 5.73938 5.79681 5.92245 6.06075 6.12367 6.18523 6.30201 6.36606 6.42316 6.73112 6.82464 6.99654 7.02400 7.13714 7.57183 7.60636 7.74347 7.95617 7.98144 8.38228 9.00857 9.59030 11.08338 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021593 B = 0.003386 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.419500 B = 8268.016458 C = 9409.904296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.314 6.314 4 C 0.075 3.925 5 C -0.197 4.197 6 C 0.058 3.942 7 F -0.149 7.149 8 C -0.131 4.131 9 C -0.148 4.148 10 C 0.200 3.800 11 N -0.732 5.732 12 C 0.125 3.875 13 C -0.096 4.096 14 H 0.062 0.938 15 C -0.132 4.132 16 C 0.030 3.970 17 C -0.516 4.516 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.141 0.859 33 H 0.404 0.596 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.031 0.969 39 H 0.017 0.983 40 H 0.019 0.981 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.416 -21.064 -1.311 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.228 6.228 4 C 0.026 3.974 5 C -0.217 4.217 6 C 0.036 3.964 7 F -0.127 7.127 8 C -0.151 4.151 9 C -0.172 4.172 10 C 0.094 3.906 11 N -0.361 5.361 12 C 0.001 3.999 13 C -0.114 4.114 14 H 0.081 0.919 15 C -0.189 4.189 16 C -0.007 4.007 17 C -0.555 4.555 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.159 0.841 33 H 0.240 0.760 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.050 0.950 39 H 0.036 0.964 40 H 0.037 0.963 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.365 -20.588 -1.306 20.633 hybrid contribution -0.771 0.272 0.112 0.826 sum -1.137 -20.316 -1.194 20.383 Atomic orbital electron populations 1.21772 0.92747 1.02715 1.03711 1.22730 0.95799 0.82073 1.01181 1.86022 1.18210 1.29034 1.89542 1.18074 0.82581 0.91845 1.04859 1.20808 0.92396 0.98725 1.09819 1.17053 0.87050 0.83322 1.08926 1.91440 1.71973 1.54671 1.94665 1.20793 1.00585 0.90391 1.03304 1.20398 0.90157 0.99513 1.07084 1.17351 0.90566 0.84987 0.97715 1.44952 1.07837 1.02899 1.80379 1.21676 0.97469 0.80113 1.00595 1.21432 0.95464 0.96855 0.97689 0.91938 1.21721 1.00590 0.99342 0.97288 1.19081 0.96243 0.88061 0.97341 1.21194 0.92946 0.91423 1.49892 0.92552 1.25009 0.95399 0.98608 0.95422 1.69958 1.17509 1.15429 1.50544 0.86617 0.82450 0.80849 0.78221 1.20706 1.21259 1.19907 0.90515 0.91421 0.91428 0.92228 0.92220 0.84801 0.84923 0.84149 0.75987 0.92492 0.92417 0.93481 0.91790 0.95001 0.96433 0.96275 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.51 5.46 37.16 0.20 0.71 16 3 O -0.31 -3.89 9.38 -19.75 -0.19 -4.07 16 4 C 0.08 1.00 6.70 -39.09 -0.26 0.73 16 5 C -0.20 -2.40 9.01 -39.40 -0.36 -2.76 16 6 C 0.06 0.74 7.30 -39.42 -0.29 0.46 16 7 F -0.15 -1.93 17.26 2.25 0.04 -1.89 16 8 C -0.13 -1.61 10.02 -39.50 -0.40 -2.01 16 9 C -0.15 -1.95 9.31 -39.41 -0.37 -2.32 16 10 C 0.20 2.84 6.67 -83.51 -0.56 2.28 16 11 N -0.73 -10.85 5.47 -58.47 -0.32 -11.17 16 12 C 0.12 2.04 4.31 -4.04 -0.02 2.02 16 13 C -0.10 -1.83 2.37 -90.63 -0.22 -2.05 16 14 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.13 -2.38 8.88 37.16 0.33 -2.05 16 16 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 17 C -0.52 -13.99 8.41 -34.44 -0.29 -14.28 16 18 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 21 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 29 H 0.06 0.47 7.66 -51.93 -0.40 0.08 16 30 H 0.13 1.35 6.30 -52.49 -0.33 1.02 16 31 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.14 1.76 6.74 -52.49 -0.35 1.41 16 33 H 0.40 5.92 7.02 -40.82 -0.29 5.64 16 34 H 0.06 0.92 7.94 -51.93 -0.41 0.51 16 35 H 0.06 0.95 7.96 -51.93 -0.41 0.53 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 38 H 0.03 0.49 7.18 -51.93 -0.37 0.12 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 340.72 15.07 5.13 5.13 Total: -1.00 -29.27 340.72 -7.88 -37.16 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.21 Total: 2.04 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -2.05 Total: -17.87 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.42 Total: -36.73 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.19 Total: -4.07 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.27 -7.88 -37.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602491457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.658 kcal (2) G-P(sol) polarization free energy of solvation -29.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds