Wall clock time and date at job start Tue Mar 31 2020 05:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47620 * 2 1 4 4 C 1.36009 * 117.00404 * 180.02562 * 3 2 1 5 5 C 1.38511 * 120.06219 * 0.02562 * 4 3 2 6 6 C 1.38458 * 119.98981 * 179.97438 * 5 4 3 7 7 F 1.35110 * 119.93321 * 180.02562 * 6 5 4 8 8 C 1.38444 * 120.13219 * 359.73025 * 6 5 4 9 9 C 1.38233 * 120.13304 * 0.55219 * 8 6 5 10 10 C 1.38695 * 120.00329 * 359.44255 * 9 8 6 11 11 N 1.40111 * 120.06658 * 180.25847 * 10 9 8 12 12 C 1.46498 * 119.99973 * 0.02562 * 11 10 9 13 13 C 1.52997 * 109.47556 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.46683 * 305.00283 * 13 12 11 15 15 C 1.53002 * 109.47273 * 64.99609 * 13 12 11 16 16 C 1.52992 * 109.47432 * 184.99871 * 13 12 11 17 17 C 1.50705 * 109.47055 * 174.99586 * 16 13 12 18 18 H 1.07997 * 120.00166 * 0.02562 * 17 16 13 19 19 C 1.37881 * 119.99884 * 179.97438 * 17 16 13 20 20 N 1.31516 * 120.00090 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99812 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47248 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46865 * 120.00699 * 21 19 17 24 24 H 1.48508 * 109.47091 * 240.00451 * 21 19 17 25 25 H 1.08998 * 109.47116 * 300.00223 * 1 2 3 26 26 H 1.09000 * 109.47034 * 59.99790 * 1 2 3 27 27 H 1.08994 * 109.47282 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47116 * 239.99776 * 2 1 3 29 29 H 1.09000 * 109.47034 * 120.00210 * 2 1 3 30 30 H 1.08000 * 120.01027 * 359.96146 * 5 4 3 31 31 H 1.07995 * 119.93160 * 180.27097 * 8 6 5 32 32 H 1.08002 * 120.00157 * 179.72750 * 9 8 6 33 33 H 0.97000 * 120.00079 * 180.02562 * 11 10 9 34 34 H 1.09001 * 109.47387 * 300.00093 * 12 11 10 35 35 H 1.09000 * 109.47341 * 59.99632 * 12 11 10 36 36 H 1.08999 * 109.47147 * 300.00574 * 15 13 12 37 37 H 1.08997 * 109.46941 * 60.00245 * 15 13 12 38 38 H 1.08994 * 109.47543 * 180.02562 * 15 13 12 39 39 H 1.08995 * 109.47278 * 294.99568 * 16 13 12 40 40 H 1.09000 * 109.47475 * 54.99924 * 16 13 12 41 41 H 0.97001 * 119.99714 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3548 1.5254 -0.0005 5 6 4.1997 0.4278 -0.0016 6 6 5.5721 0.6109 -0.0027 7 9 6.3953 -0.4605 -0.0042 8 6 6.1026 1.8897 -0.0084 9 6 5.2643 2.9888 -0.0014 10 6 3.8887 2.8119 -0.0005 11 7 3.0378 3.9250 0.0011 12 6 3.6009 5.2774 0.0011 13 6 2.4653 6.3028 0.0036 14 1 1.7993 6.1092 -0.8373 15 6 1.6802 6.1912 1.3120 16 6 3.0495 7.7112 -0.1221 17 6 1.9285 8.7110 -0.2433 18 1 0.9020 8.3755 -0.2314 19 6 2.2133 10.0543 -0.3682 20 7 3.4633 10.4629 -0.3822 21 14 0.8237 11.2937 -0.5177 22 1 -0.4798 10.5836 -0.4749 23 1 0.8983 12.2591 0.6082 24 1 0.9480 12.0239 -1.8049 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7882 -0.5707 -0.0014 31 1 7.1736 2.0288 -0.0136 32 1 5.6805 3.9854 -0.0014 33 1 2.0759 3.8001 0.0021 34 1 4.2160 5.4150 0.8904 35 1 4.2139 5.4158 -0.8895 36 1 1.2640 5.1877 1.4016 37 1 2.3462 6.3846 2.1529 38 1 0.8709 6.9213 1.3137 39 1 3.6446 7.9379 0.7625 40 1 3.6814 7.7647 -1.0086 41 1 3.6636 11.4079 -0.4705 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602491458.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:44 Heat of formation + Delta-G solvation = -79.841545 kcal Electronic energy + Delta-G solvation = -21510.764617 eV Core-core repulsion = 18111.600825 eV Total energy + Delta-G solvation = -3399.163793 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.71713 -40.26106 -37.83739 -36.42244 -33.87960 -32.20375 -31.83729 -30.07082 -28.48782 -26.82687 -25.73480 -24.22394 -22.86444 -22.27563 -21.19453 -19.42640 -18.50582 -17.12273 -16.66882 -16.33869 -16.31210 -15.89444 -15.38627 -14.65686 -14.59026 -14.49041 -14.22797 -14.04163 -13.48836 -13.00156 -12.92990 -12.70199 -12.52240 -12.46225 -12.17887 -11.79369 -11.52701 -11.49924 -11.20801 -10.94146 -10.91747 -10.80178 -10.40508 -10.35907 -9.99468 -9.62537 -9.31940 -9.05316 -8.69478 -8.38833 -7.00539 -6.03311 -4.04950 1.24490 1.41322 3.01643 3.28907 3.36860 3.40171 3.67551 3.68398 4.39120 4.43814 4.63679 4.69261 4.82314 4.96768 5.01527 5.10018 5.31711 5.32931 5.49874 5.54652 5.55309 5.67156 5.73905 5.79701 5.92204 6.06074 6.12337 6.18496 6.30173 6.36538 6.42259 6.73071 6.82425 6.99590 7.02273 7.13697 7.57170 7.60747 7.74248 7.95546 7.98092 8.38152 9.00969 9.58979 11.08133 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021592 B = 0.003386 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.450873 B = 8268.009800 C = 9409.958490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.314 6.314 4 C 0.075 3.925 5 C -0.197 4.197 6 C 0.058 3.942 7 F -0.149 7.149 8 C -0.131 4.131 9 C -0.148 4.148 10 C 0.200 3.800 11 N -0.732 5.732 12 C 0.125 3.875 13 C -0.096 4.096 14 H 0.062 0.938 15 C -0.132 4.132 16 C 0.030 3.970 17 C -0.515 4.515 18 H 0.057 0.943 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.890 3.110 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.141 0.859 33 H 0.404 0.596 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.031 0.969 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.019 0.981 40 H 0.017 0.983 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 -21.078 1.300 21.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.228 6.228 4 C 0.026 3.974 5 C -0.217 4.217 6 C 0.036 3.964 7 F -0.128 7.128 8 C -0.151 4.151 9 C -0.172 4.172 10 C 0.094 3.906 11 N -0.361 5.361 12 C 0.001 3.999 13 C -0.114 4.114 14 H 0.081 0.919 15 C -0.189 4.189 16 C -0.008 4.008 17 C -0.554 4.554 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.210 1.210 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.159 0.841 33 H 0.240 0.760 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.377 -20.606 1.289 20.650 hybrid contribution -0.760 0.281 -0.098 0.817 sum -1.137 -20.325 1.192 20.392 Atomic orbital electron populations 1.21772 0.92747 1.02714 1.03712 1.22728 0.95799 0.82076 1.01179 1.86022 1.18209 1.29034 1.89545 1.18073 0.82580 0.91844 1.04868 1.20809 0.92395 0.98724 1.09811 1.17058 0.87052 0.83321 1.08929 1.91444 1.71976 1.54666 1.94668 1.20789 1.00586 0.90390 1.03300 1.20399 0.90157 0.99514 1.07084 1.17350 0.90566 0.84987 0.97713 1.44949 1.07839 1.02898 1.80373 1.21675 0.97471 0.80115 1.00595 1.21432 0.95468 0.96853 0.97689 0.91936 1.21720 1.00591 0.99348 0.97285 1.19086 0.96258 0.88073 0.97346 1.21233 0.92976 0.91411 1.49756 0.92493 1.25013 0.95395 0.98622 0.95431 1.69968 1.17483 1.15331 1.50652 0.86565 0.82525 0.81456 0.77633 1.19769 1.21055 1.21044 0.91435 0.91415 0.90514 0.92222 0.92230 0.84799 0.84924 0.84149 0.75986 0.92491 0.92417 0.94998 0.93482 0.91791 0.96278 0.96420 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.51 5.46 37.16 0.20 0.71 16 3 O -0.31 -3.89 9.38 -19.77 -0.19 -4.07 16 4 C 0.08 1.00 6.70 -39.09 -0.26 0.73 16 5 C -0.20 -2.40 9.01 -39.40 -0.36 -2.76 16 6 C 0.06 0.74 7.30 -39.42 -0.29 0.46 16 7 F -0.15 -1.93 17.26 2.25 0.04 -1.90 16 8 C -0.13 -1.61 10.02 -39.51 -0.40 -2.01 16 9 C -0.15 -1.95 9.31 -39.41 -0.37 -2.32 16 10 C 0.20 2.84 6.67 -83.51 -0.56 2.28 16 11 N -0.73 -10.84 5.47 -58.47 -0.32 -11.16 16 12 C 0.12 2.04 4.31 -4.04 -0.02 2.02 16 13 C -0.10 -1.83 2.37 -90.62 -0.22 -2.04 16 14 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.13 -2.37 8.88 37.16 0.33 -2.04 16 16 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 17 C -0.52 -13.97 8.41 -34.44 -0.29 -14.25 16 18 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 21 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.47 7.66 -51.93 -0.40 0.08 16 29 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 30 H 0.13 1.35 6.30 -52.49 -0.33 1.02 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.14 1.76 6.74 -52.49 -0.35 1.40 16 33 H 0.40 5.92 7.02 -40.82 -0.29 5.64 16 34 H 0.06 0.92 7.95 -51.93 -0.41 0.51 16 35 H 0.06 0.95 7.95 -51.93 -0.41 0.53 16 36 H 0.03 0.49 7.18 -51.93 -0.37 0.12 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 340.72 15.07 5.13 5.13 Total: -1.00 -29.29 340.72 -7.88 -37.18 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.21 Total: 2.00 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -2.05 Total: -17.86 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.42 Total: -36.72 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.19 Total: -4.07 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.29 -7.88 -37.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602491458.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.666 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds