Wall clock time and date at job start Tue Mar 31 2020 05:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47245 * 2 1 4 4 C 1.52992 * 109.47115 * 120.00484 * 2 1 3 5 5 C 1.50699 * 109.47162 * 294.99656 * 4 2 1 6 6 H 1.07996 * 120.00139 * 0.02562 * 5 4 2 7 7 C 1.37885 * 120.00183 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99626 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00123 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47151 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47372 * 119.99685 * 9 7 5 12 12 H 1.48495 * 109.47261 * 240.00056 * 9 7 5 13 13 C 1.53001 * 109.46732 * 240.00508 * 2 1 3 14 14 N 1.46498 * 109.47584 * 64.99953 * 13 2 1 15 15 C 1.39664 * 120.00039 * 179.97438 * 14 13 2 16 16 C 1.38973 * 120.04703 * 359.97438 * 15 14 13 17 17 C 1.38116 * 120.03003 * 180.02562 * 16 15 14 18 18 C 1.38216 * 120.13578 * 359.74695 * 17 16 15 19 19 C 1.38779 * 120.08401 * 0.51068 * 18 17 16 20 20 O 1.35897 * 120.00949 * 179.76812 * 19 18 17 21 21 C 1.42898 * 117.00481 * 359.71829 * 20 19 18 22 22 C 1.52997 * 109.47319 * 180.02562 * 21 20 19 23 23 F 1.39906 * 109.47177 * 64.99915 * 22 21 20 24 24 C 1.38609 * 119.96517 * 359.48769 * 19 18 17 25 25 H 1.09001 * 109.47285 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46704 * 300.00065 * 1 2 3 27 27 H 1.09000 * 109.47114 * 59.99468 * 1 2 3 28 28 H 1.09004 * 109.47253 * 54.99965 * 4 2 1 29 29 H 1.09005 * 109.47245 * 174.99414 * 4 2 1 30 30 H 0.96998 * 119.99746 * 180.02562 * 8 7 5 31 31 H 1.09006 * 109.47286 * 304.99724 * 13 2 1 32 32 H 1.09008 * 109.46600 * 185.00259 * 13 2 1 33 33 H 0.97000 * 119.99514 * 359.97438 * 14 13 2 34 34 H 1.07996 * 119.98339 * 0.02562 * 16 15 14 35 35 H 1.08007 * 119.92769 * 179.97438 * 17 16 15 36 36 H 1.07991 * 119.95689 * 180.26971 * 18 17 16 37 37 H 1.09002 * 109.47259 * 300.00417 * 21 20 19 38 38 H 1.09001 * 109.47074 * 60.00439 * 21 20 19 39 39 H 1.09001 * 109.47630 * 185.00204 * 22 21 20 40 40 H 1.09004 * 109.47346 * 305.00335 * 22 21 20 41 41 H 1.08007 * 120.06150 * 180.27477 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0801 0.9740 2.3758 7 6 1.9933 -0.4019 3.7282 8 7 2.6764 -1.5190 3.8510 9 14 1.4987 0.5623 5.2496 10 1 0.7403 1.7729 4.8436 11 1 0.6452 -0.2874 6.1185 12 1 2.7165 0.9679 5.9963 13 6 2.0399 -0.7212 -1.2493 14 7 1.6524 0.0355 -2.4424 15 6 2.0088 -0.4292 -3.7104 16 6 2.7316 -1.6089 -3.8413 17 6 3.0844 -2.0679 -5.0953 18 6 2.7155 -1.3587 -6.2229 19 6 1.9983 -0.1772 -6.0979 20 8 1.6405 0.5213 -7.2074 21 6 2.0412 -0.0157 -8.4695 22 6 1.5523 0.9013 -9.5924 23 9 2.1955 2.1401 -9.4962 24 6 1.6422 0.2869 -4.8413 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6054 -1.7199 1.2950 29 1 3.1264 -0.7996 1.2054 30 1 2.9237 -1.8420 4.7315 31 1 1.6053 -1.7198 -1.2953 32 1 3.1263 -0.7994 -1.2056 33 1 1.1482 0.8592 -2.3517 34 1 3.0176 -2.1671 -2.9621 35 1 3.6465 -2.9847 -5.1952 36 1 2.9891 -1.7225 -7.2022 37 1 3.1283 -0.0862 -8.5058 38 1 1.6083 -1.0081 -8.5960 39 1 1.7798 0.4478 -10.5571 40 1 0.4753 1.0434 -9.5026 41 1 1.0802 1.2039 -4.7425 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602495539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:02 Heat of formation + Delta-G solvation = -84.709601 kcal Electronic energy + Delta-G solvation = -20886.451972 eV Core-core repulsion = 17487.077084 eV Total energy + Delta-G solvation = -3399.374888 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.94402 -40.14229 -38.24786 -36.28825 -33.81787 -32.07781 -31.64799 -29.70496 -28.65072 -26.88165 -25.80226 -23.87201 -23.03087 -22.35047 -20.92961 -19.31147 -18.34568 -16.97966 -16.69250 -16.43715 -16.17645 -15.67952 -15.35114 -15.19084 -15.10470 -14.58429 -14.46765 -13.88031 -13.52907 -13.13800 -12.97970 -12.66754 -12.44428 -12.09055 -11.76687 -11.68512 -11.53778 -11.37110 -11.20684 -10.93843 -10.86871 -10.85385 -10.41417 -10.35958 -10.00577 -9.68315 -9.33313 -9.06030 -8.39375 -8.28939 -7.25975 -6.03765 -4.05482 1.55178 1.69798 2.84749 3.28703 3.36634 3.39990 3.76370 3.95501 4.15079 4.34492 4.43356 4.51741 4.68950 4.86962 5.00059 5.15926 5.32303 5.35727 5.40622 5.43312 5.50984 5.64351 5.66472 5.89958 5.97481 6.17384 6.31905 6.35727 6.37687 6.42605 6.60203 6.66051 6.83527 6.98147 7.02314 7.34354 7.55395 7.60096 7.73321 7.94800 7.95124 8.37393 9.00401 9.58414 11.07688 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.040899 B = 0.002473 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.443479 B =11320.686444 C =11761.404951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.062 0.938 4 C 0.030 3.970 5 C -0.515 4.515 6 H 0.057 0.943 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.125 3.875 14 N -0.735 5.735 15 C 0.261 3.739 16 C -0.231 4.231 17 C -0.034 4.034 18 C -0.277 4.277 19 C 0.170 3.830 20 O -0.314 6.314 21 C 0.027 3.973 22 C 0.067 3.933 23 F -0.211 7.211 24 C -0.237 4.237 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.030 0.970 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.260 0.740 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.399 0.601 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.716 0.299 -24.880 24.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.115 4.115 3 H 0.081 0.919 4 C -0.008 4.008 5 C -0.554 4.554 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.002 3.998 14 N -0.361 5.361 15 C 0.154 3.846 16 C -0.254 4.254 17 C -0.053 4.053 18 C -0.298 4.298 19 C 0.124 3.876 20 O -0.228 6.228 21 C -0.049 4.049 22 C 0.012 3.988 23 F -0.192 7.192 24 C -0.261 4.261 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.234 0.766 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.677 0.273 -24.564 24.622 hybrid contribution -0.226 0.547 0.901 1.077 sum -1.903 0.819 -23.663 23.754 Atomic orbital electron populations 1.21728 0.95892 1.01123 1.00235 1.21448 0.95675 0.99850 0.94545 0.91919 1.19087 0.96293 0.95560 0.89850 1.21225 1.34879 1.08373 0.90886 0.92492 1.25022 0.95247 0.95095 0.99168 1.69967 1.38883 1.21144 1.23424 0.86553 0.78283 0.80077 0.83193 1.19774 1.21052 1.21041 1.21677 0.99221 0.95197 0.83733 1.45064 1.60547 1.27952 1.02577 1.17543 0.90503 0.91541 0.85021 1.20655 1.07836 0.98683 0.98181 1.20624 0.95486 0.97748 0.91444 1.20836 1.10763 0.98813 0.99351 1.18525 0.93179 0.90176 0.85698 1.86046 1.74328 1.49597 1.12792 1.23407 1.01105 0.97847 0.82562 1.22064 0.98320 0.80460 0.97964 1.92812 1.83853 1.45065 1.97513 1.19626 1.13116 1.04543 0.88784 0.93444 0.91728 0.95073 0.96279 0.96411 0.93042 0.92422 0.92351 0.76602 0.85717 0.86120 0.86402 0.90802 0.90211 0.88666 0.89646 0.85724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.88 37.16 0.33 -2.04 16 2 C -0.10 -1.85 2.37 -90.62 -0.22 -2.06 16 3 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.03 0.73 4.45 -27.89 -0.12 0.60 16 5 C -0.52 -14.01 8.41 -34.44 -0.29 -14.30 16 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.13 2.07 4.30 -4.04 -0.02 2.05 16 14 N -0.74 -10.81 5.46 -58.65 -0.32 -11.13 16 15 C 0.26 3.80 6.65 -83.81 -0.56 3.24 16 16 C -0.23 -3.21 9.31 -39.35 -0.37 -3.58 16 17 C -0.03 -0.41 10.03 -39.63 -0.40 -0.81 16 18 C -0.28 -3.24 9.04 -39.39 -0.36 -3.59 16 19 C 0.17 2.22 6.68 -39.24 -0.26 1.96 16 20 O -0.31 -3.77 10.13 -19.42 -0.20 -3.97 16 21 C 0.03 0.21 5.20 37.16 0.19 0.40 16 22 C 0.07 0.41 7.92 37.16 0.29 0.71 16 23 F -0.21 -2.16 17.35 2.25 0.04 -2.12 16 24 C -0.24 -3.31 9.83 -39.24 -0.39 -3.70 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 27 H 0.03 0.47 7.18 -51.93 -0.37 0.10 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 32 H 0.06 0.99 7.95 -51.92 -0.41 0.58 16 33 H 0.40 5.45 7.66 -40.82 -0.31 5.14 16 34 H 0.12 1.72 6.73 -52.49 -0.35 1.36 16 35 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 36 H 0.12 1.07 6.29 -52.49 -0.33 0.74 16 37 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 38 H 0.08 0.45 7.65 -51.93 -0.40 0.06 16 39 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 341.97 15.07 5.15 5.15 Total: -1.00 -30.93 341.97 -8.10 -39.03 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.24 Total: 2.00 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -2.25 Total: -19.64 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.42 Total: -36.78 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.20 Total: -3.97 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.93 -8.10 -39.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602495539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.677 kcal (2) G-P(sol) polarization free energy of solvation -30.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds