Wall clock time and date at job start Tue Mar 31 2020 05:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47245 * 2 1 4 4 C 1.52992 * 109.47115 * 120.00484 * 2 1 3 5 5 C 1.50699 * 109.47162 * 294.99656 * 4 2 1 6 6 H 1.07996 * 120.00139 * 0.02562 * 5 4 2 7 7 C 1.37885 * 120.00183 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99626 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00123 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47151 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47372 * 119.99685 * 9 7 5 12 12 H 1.48495 * 109.47261 * 240.00056 * 9 7 5 13 13 C 1.53001 * 109.46732 * 240.00508 * 2 1 3 14 14 N 1.46498 * 109.47584 * 64.99953 * 13 2 1 15 15 C 1.39664 * 120.00039 * 179.97438 * 14 13 2 16 16 C 1.38973 * 120.04703 * 359.97438 * 15 14 13 17 17 C 1.38116 * 120.03003 * 180.02562 * 16 15 14 18 18 C 1.38216 * 120.13578 * 359.74695 * 17 16 15 19 19 C 1.38779 * 120.08401 * 0.51068 * 18 17 16 20 20 O 1.35897 * 120.00949 * 179.76812 * 19 18 17 21 21 C 1.42898 * 117.00481 * 359.71829 * 20 19 18 22 22 C 1.52997 * 109.47319 * 180.02562 * 21 20 19 23 23 F 1.39906 * 109.47177 * 64.99915 * 22 21 20 24 24 C 1.38609 * 119.96517 * 359.48769 * 19 18 17 25 25 H 1.09001 * 109.47285 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46704 * 300.00065 * 1 2 3 27 27 H 1.09000 * 109.47114 * 59.99468 * 1 2 3 28 28 H 1.09004 * 109.47253 * 54.99965 * 4 2 1 29 29 H 1.09005 * 109.47245 * 174.99414 * 4 2 1 30 30 H 0.96998 * 119.99746 * 180.02562 * 8 7 5 31 31 H 1.09006 * 109.47286 * 304.99724 * 13 2 1 32 32 H 1.09008 * 109.46600 * 185.00259 * 13 2 1 33 33 H 0.97000 * 119.99514 * 359.97438 * 14 13 2 34 34 H 1.07996 * 119.98339 * 0.02562 * 16 15 14 35 35 H 1.08007 * 119.92769 * 179.97438 * 17 16 15 36 36 H 1.07991 * 119.95689 * 180.26971 * 18 17 16 37 37 H 1.09002 * 109.47259 * 300.00417 * 21 20 19 38 38 H 1.09001 * 109.47074 * 60.00439 * 21 20 19 39 39 H 1.09001 * 109.47630 * 185.00204 * 22 21 20 40 40 H 1.09004 * 109.47346 * 305.00335 * 22 21 20 41 41 H 1.08007 * 120.06150 * 180.27477 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0801 0.9740 2.3758 7 6 1.9933 -0.4019 3.7282 8 7 2.6764 -1.5190 3.8510 9 14 1.4987 0.5623 5.2496 10 1 0.7403 1.7729 4.8436 11 1 0.6452 -0.2874 6.1185 12 1 2.7165 0.9679 5.9963 13 6 2.0399 -0.7212 -1.2493 14 7 1.6524 0.0355 -2.4424 15 6 2.0088 -0.4292 -3.7104 16 6 2.7316 -1.6089 -3.8413 17 6 3.0844 -2.0679 -5.0953 18 6 2.7155 -1.3587 -6.2229 19 6 1.9983 -0.1772 -6.0979 20 8 1.6405 0.5213 -7.2074 21 6 2.0412 -0.0157 -8.4695 22 6 1.5523 0.9013 -9.5924 23 9 2.1955 2.1401 -9.4962 24 6 1.6422 0.2869 -4.8413 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6054 -1.7199 1.2950 29 1 3.1264 -0.7996 1.2054 30 1 2.9237 -1.8420 4.7315 31 1 1.6053 -1.7198 -1.2953 32 1 3.1263 -0.7994 -1.2056 33 1 1.1482 0.8592 -2.3517 34 1 3.0176 -2.1671 -2.9621 35 1 3.6465 -2.9847 -5.1952 36 1 2.9891 -1.7225 -7.2022 37 1 3.1283 -0.0862 -8.5058 38 1 1.6083 -1.0081 -8.5960 39 1 1.7798 0.4478 -10.5571 40 1 0.4753 1.0434 -9.5026 41 1 1.0802 1.2039 -4.7425 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602495539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:01 Heat of formation + Delta-G solvation = -102.196531 kcal Electronic energy + Delta-G solvation = -20887.210262 eV Core-core repulsion = 17487.077084 eV Total energy + Delta-G solvation = -3400.133178 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.57525 -41.06891 -39.30499 -37.64551 -35.36840 -33.87280 -32.36566 -30.67690 -29.79504 -28.65814 -27.17520 -25.01775 -24.29672 -23.46076 -21.90097 -20.87828 -19.28127 -18.56077 -17.59638 -17.42058 -17.16342 -16.71561 -16.49245 -16.20534 -16.06925 -15.95336 -15.83359 -14.95336 -14.58449 -14.44265 -14.36181 -14.08146 -13.82140 -13.39083 -13.35002 -12.80778 -12.74909 -12.53158 -12.35890 -12.29410 -12.19297 -12.04404 -11.87360 -11.63886 -11.60986 -11.18284 -11.02885 -10.83171 -10.54741 -9.26786 -8.35469 -8.18480 -6.27176 0.55652 0.69622 1.39850 1.40904 1.53027 2.05288 2.41169 2.67195 2.95324 3.15646 3.61271 3.87903 3.99463 4.04826 4.07437 4.17280 4.25209 4.29558 4.33105 4.37608 4.42182 4.58272 4.67894 4.76256 4.77760 4.88167 4.92542 5.02328 5.19949 5.29341 5.38131 5.40243 5.44463 5.51849 5.63399 5.69479 5.76591 5.86104 6.24634 6.37501 6.51234 6.84122 6.89090 7.41077 8.93719 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.040899 B = 0.002473 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.443479 B =11320.686444 C =11761.404951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.085 4.085 3 H 0.062 0.938 4 C 0.034 3.966 5 C -0.528 4.528 6 H 0.062 0.938 7 C -0.002 4.002 8 N -0.933 5.933 9 Si 0.960 3.040 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.142 3.858 14 N -0.735 5.735 15 C 0.246 3.754 16 C -0.250 4.250 17 C -0.034 4.034 18 C -0.270 4.270 19 C 0.163 3.837 20 O -0.332 6.332 21 C 0.016 3.984 22 C 0.061 3.939 23 F -0.237 7.237 24 C -0.251 4.251 25 H 0.042 0.958 26 H 0.048 0.952 27 H 0.062 0.938 28 H -0.004 1.004 29 H -0.008 1.008 30 H 0.262 0.738 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.404 0.596 34 H 0.119 0.881 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.135 0.865 40 H 0.093 0.907 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 0.547 -26.777 26.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.104 4.104 3 H 0.080 0.920 4 C -0.004 4.004 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.574 5.574 9 Si 0.785 3.215 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.207 1.207 13 C 0.018 3.982 14 N -0.363 5.363 15 C 0.140 3.860 16 C -0.273 4.273 17 C -0.052 4.052 18 C -0.291 4.291 19 C 0.117 3.883 20 O -0.247 6.247 21 C -0.059 4.059 22 C 0.007 3.993 23 F -0.218 7.218 24 C -0.275 4.275 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.014 0.986 29 H 0.010 0.990 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.239 0.761 34 H 0.137 0.863 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.153 0.847 40 H 0.111 0.889 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.230 0.533 -26.500 26.599 hybrid contribution -0.034 0.431 1.330 1.399 sum -2.264 0.964 -25.170 25.290 Atomic orbital electron populations 1.21640 0.94536 1.01102 1.00980 1.21210 0.96683 0.99181 0.93347 0.91983 1.18966 0.94559 0.94820 0.92048 1.21638 1.34427 1.08596 0.91947 0.91985 1.25931 0.95311 0.96101 1.02624 1.70096 1.40223 1.22848 1.24257 0.85467 0.78017 0.78883 0.79097 1.18618 1.20606 1.20676 1.21283 0.98519 0.94878 0.83497 1.44812 1.61280 1.28106 1.02133 1.17657 0.91349 0.92153 0.84837 1.20808 1.08594 0.98851 0.99049 1.20960 0.94982 0.98548 0.90743 1.21184 1.09351 0.97896 1.00640 1.18680 0.93066 0.90627 0.85891 1.86035 1.74478 1.50291 1.13853 1.23780 1.01742 0.99394 0.80984 1.22413 0.98557 0.79184 0.99185 1.92760 1.84414 1.46997 1.97679 1.19743 1.13629 1.04780 0.89323 0.93845 0.93272 0.91935 0.98599 0.98997 0.92924 0.92654 0.93210 0.76053 0.86297 0.83494 0.83388 0.90361 0.87708 0.84720 0.88880 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 8.88 71.98 0.64 -3.78 16 2 C -0.09 -3.31 2.37 -10.79 -0.03 -3.34 16 3 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 4 C 0.03 1.71 4.45 29.85 0.13 1.84 16 5 C -0.53 -29.13 8.41 25.60 0.22 -28.91 16 6 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 7 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 8 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 9 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 C 0.14 4.78 4.30 86.38 0.37 5.15 16 14 N -0.74 -21.45 5.46 -339.46 -1.85 -23.30 16 15 C 0.25 7.06 6.65 38.20 0.25 7.31 16 16 C -0.25 -6.82 9.31 22.42 0.21 -6.61 16 17 C -0.03 -0.75 10.03 22.24 0.22 -0.52 16 18 C -0.27 -5.62 9.04 22.39 0.20 -5.42 16 19 C 0.16 4.02 6.68 22.49 0.15 4.17 16 20 O -0.33 -7.43 10.13 -92.39 -0.94 -8.36 16 21 C 0.02 0.20 5.20 71.98 0.37 0.58 16 22 C 0.06 0.59 7.92 71.98 0.57 1.16 16 23 F -0.24 -4.53 17.35 44.97 0.78 -3.75 16 24 C -0.25 -6.86 9.83 22.49 0.22 -6.64 16 25 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.05 1.87 6.95 -2.39 -0.02 1.85 16 27 H 0.06 1.80 7.18 -2.39 -0.02 1.79 16 28 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 29 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 30 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 31 H 0.06 1.87 7.95 -2.38 -0.02 1.86 16 32 H 0.05 1.74 7.95 -2.38 -0.02 1.72 16 33 H 0.40 10.76 7.66 -92.71 -0.71 10.05 16 34 H 0.12 3.30 6.73 -2.91 -0.02 3.28 16 35 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.15 2.10 6.29 -2.91 -0.02 2.09 16 37 H 0.08 0.92 7.67 -2.39 -0.02 0.90 16 38 H 0.10 0.80 7.65 -2.39 -0.02 0.78 16 39 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -67.74 341.97 4.61 -63.13 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.31 Total: 16.91 kcal Atomic # 6 Polarization: -38.67 SS G_CDS: 4.00 Total: -34.67 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -1.57 Total: -79.29 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.94 Total: -8.36 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.78 Total: -3.75 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -67.74 4.61 -63.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602495539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.071 kcal (2) G-P(sol) polarization free energy of solvation -67.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds