Wall clock time and date at job start Tue Mar 31 2020 05:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35951 * 117.00120 * 2 1 4 4 C 1.38659 * 120.06659 * 0.02562 * 3 2 1 5 5 C 1.38183 * 119.97106 * 179.70692 * 4 3 2 6 6 C 1.38259 * 120.09539 * 0.54839 * 5 4 3 7 7 C 1.50696 * 119.93820 * 179.73009 * 6 5 4 8 8 N 1.46904 * 109.46800 * 269.72718 * 7 6 5 9 9 C 1.46899 * 111.00029 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47254 * 179.97438 * 9 8 7 11 11 H 1.09008 * 109.47017 * 54.99767 * 10 9 8 12 12 C 1.53001 * 109.47242 * 295.00236 * 10 9 8 13 13 C 1.52994 * 109.47404 * 174.99689 * 10 9 8 14 14 C 1.50701 * 109.47248 * 184.99754 * 13 10 9 15 15 H 1.07997 * 120.00120 * 0.02562 * 14 13 10 16 16 C 1.37881 * 119.99825 * 179.97438 * 14 13 10 17 17 N 1.31509 * 120.00260 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99910 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46938 * 60.00454 * 18 16 14 20 20 H 1.48501 * 109.47358 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47398 * 300.00402 * 18 16 14 22 22 C 1.38260 * 120.12469 * 359.45055 * 6 5 4 23 23 C 1.38337 * 120.03080 * 0.27575 * 22 6 5 24 24 F 1.35091 * 120.04725 * 179.97438 * 23 22 6 25 25 H 1.09000 * 109.47276 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47036 * 300.00599 * 1 2 3 27 27 H 1.09007 * 109.46513 * 60.00467 * 1 2 3 28 28 H 1.08002 * 120.01097 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.95240 * 180.29698 * 5 4 3 30 30 H 1.08995 * 109.47455 * 149.72655 * 7 6 5 31 31 H 1.09003 * 109.47449 * 29.71888 * 7 6 5 32 32 H 1.00902 * 111.00190 * 56.03702 * 8 7 6 33 33 H 1.09002 * 109.47043 * 299.99792 * 9 8 7 34 34 H 1.09001 * 109.47354 * 59.99854 * 9 8 7 35 35 H 1.08996 * 109.47271 * 180.02562 * 12 10 9 36 36 H 1.09008 * 109.46731 * 299.99706 * 12 10 9 37 37 H 1.08998 * 109.47430 * 59.99652 * 12 10 9 38 38 H 1.09001 * 109.47698 * 305.00111 * 13 10 9 39 39 H 1.09009 * 109.47010 * 65.00116 * 13 10 9 40 40 H 0.97000 * 120.00592 * 179.97438 * 17 16 14 41 41 H 1.08002 * 119.98259 * 180.25464 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2924 2.3751 0.0005 5 6 1.9218 3.6053 0.0067 6 6 3.3025 3.6776 0.0008 7 6 3.9852 5.0211 0.0014 8 7 4.2068 5.4582 -1.3835 9 6 4.8726 6.7671 -1.4223 10 6 5.0864 7.1877 -2.8777 11 1 4.1326 7.1694 -3.4051 12 6 6.0600 6.2182 -3.5509 13 6 5.6654 8.6032 -2.9197 14 6 5.7614 9.0644 -4.3512 15 1 5.4411 8.4131 -5.1510 16 6 6.2572 10.3182 -4.6398 17 7 6.6467 11.1114 -3.6659 18 14 6.3755 10.8901 -6.4142 19 1 5.0222 10.8900 -7.0255 20 1 6.9375 12.2640 -6.4550 21 1 7.2613 9.9707 -7.1726 22 6 4.0581 2.5197 0.0003 23 6 3.4334 1.2854 -0.0002 24 9 4.1713 0.1539 -0.0012 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 0.2138 2.3201 0.0005 29 1 1.3344 4.5115 0.0119 30 1 4.9432 4.9416 0.5150 31 1 3.3564 5.7480 0.5155 32 1 3.3400 5.4775 -1.8997 33 1 4.2503 7.5063 -0.9178 34 1 5.8369 6.6993 -0.9186 35 1 6.2127 6.5181 -4.5876 36 1 7.0138 6.2365 -3.0235 37 1 5.6476 5.2097 -3.5210 38 1 5.0153 9.2784 -2.3633 39 1 6.6587 8.6030 -2.4707 40 1 6.9959 11.9934 -3.8689 41 1 5.1364 2.5790 -0.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602505464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:08 Heat of formation + Delta-G solvation = -75.905708 kcal Electronic energy + Delta-G solvation = -21040.806789 eV Core-core repulsion = 17641.813667 eV Total energy + Delta-G solvation = -3398.993122 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.90235 -40.30434 -38.25744 -36.60369 -34.04692 -32.13441 -30.97426 -30.39374 -27.97510 -26.83893 -25.81097 -24.13274 -23.00746 -22.24005 -21.41922 -19.14293 -18.55888 -17.19415 -16.91761 -16.40822 -16.30580 -15.42073 -15.26229 -15.06866 -14.72867 -14.52529 -14.44991 -14.15927 -13.59218 -13.45557 -12.77822 -12.52992 -12.43267 -12.19707 -12.08010 -11.65372 -11.50023 -11.40572 -11.27964 -11.24443 -10.83789 -10.75185 -10.28527 -10.24679 -9.69514 -9.18862 -9.12110 -8.96668 -8.41678 -8.32009 -8.11737 -5.97001 -3.98114 0.91484 0.98474 2.82862 3.29116 3.34961 3.39293 3.41943 3.99863 4.40450 4.41633 4.49505 4.60761 4.76249 4.77674 4.91057 5.01953 5.08924 5.26978 5.32694 5.38722 5.55135 5.67719 5.72395 5.84283 5.86385 5.93359 6.15667 6.31643 6.39296 6.41763 6.54725 6.69511 6.97712 7.01046 7.18654 7.20337 7.32612 7.60473 7.69907 7.85744 8.03124 8.47191 9.08058 9.65179 11.14492 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033925 B = 0.002571 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.160002 B =10886.832111 C =10938.469679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.090 3.910 4 C -0.182 4.182 5 C -0.084 4.084 6 C -0.083 4.083 7 C 0.098 3.902 8 N -0.683 5.683 9 C 0.063 3.937 10 C -0.082 4.082 11 H 0.053 0.947 12 C -0.123 4.123 13 C 0.027 3.973 14 C -0.513 4.513 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.093 4.093 23 C 0.068 3.932 24 F -0.134 7.134 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.136 0.864 29 H 0.131 0.869 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.339 0.661 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.012 0.988 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.335 -19.262 10.406 25.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.044 3.956 4 C -0.200 4.200 5 C -0.103 4.103 6 C -0.083 4.083 7 C -0.031 4.031 8 N -0.314 5.314 9 C -0.065 4.065 10 C -0.101 4.101 11 H 0.072 0.928 12 C -0.181 4.181 13 C -0.010 4.010 14 C -0.551 4.551 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.112 4.112 23 C 0.048 3.952 24 F -0.113 7.113 25 H 0.120 0.880 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.154 0.846 29 H 0.149 0.851 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.156 0.844 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.031 0.969 39 H 0.035 0.965 40 H 0.070 0.930 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.552 -19.664 10.378 25.057 hybrid contribution -0.789 0.965 -0.702 1.430 sum -12.341 -18.699 9.676 24.405 Atomic orbital electron populations 1.23104 0.78009 1.04188 1.01519 1.86128 1.21660 1.25944 1.88845 1.19004 0.90835 0.85571 1.00231 1.21079 1.00160 0.91413 1.07392 1.20947 0.94034 0.97296 0.98000 1.19639 0.92978 0.95013 1.00715 1.20850 0.99553 0.91091 0.91557 1.60585 1.29065 1.30536 1.11184 1.22188 0.98085 0.86963 0.99271 1.21199 0.98894 0.98099 0.91908 0.92849 1.21592 0.98286 0.97510 1.00664 1.19120 0.95917 0.88980 0.97001 1.21202 1.41534 0.99758 0.92644 0.92622 1.25020 0.95676 0.96896 0.96963 1.69950 1.43377 1.09015 1.31371 0.86690 0.78330 0.77711 0.85452 1.20330 1.21384 1.20255 1.20936 1.01312 0.89415 0.99579 1.16976 0.85880 0.83043 1.09327 1.91493 1.76423 1.49028 1.94321 0.88033 0.92484 0.92383 0.84590 0.85136 0.90038 0.94257 0.84375 0.95627 0.91389 0.92792 0.94151 0.93910 0.96941 0.96537 0.93045 0.83745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.33 10.36 -19.58 -0.20 -3.53 16 3 C 0.09 1.00 6.69 -39.18 -0.26 0.74 16 4 C -0.18 -1.65 9.04 -39.45 -0.36 -2.01 16 5 C -0.08 -0.79 9.69 -39.59 -0.38 -1.17 16 6 C -0.08 -0.89 5.39 -104.61 -0.56 -1.45 16 7 C 0.10 1.11 5.81 -4.98 -0.03 1.09 16 8 N -0.68 -9.42 5.94 -115.06 -0.68 -10.10 16 9 C 0.06 1.05 5.07 -3.83 -0.02 1.03 16 10 C -0.08 -1.65 2.48 -90.62 -0.22 -1.87 16 11 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 12 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 13 C 0.03 0.69 4.45 -27.89 -0.12 0.57 16 14 C -0.51 -14.34 8.41 -34.44 -0.29 -14.63 16 15 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 18 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.09 -1.06 9.67 -39.54 -0.38 -1.44 16 23 C 0.07 0.83 7.31 -39.29 -0.29 0.54 16 24 F -0.13 -1.80 17.11 2.25 0.04 -1.77 16 25 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 27 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 28 H 0.14 0.88 6.30 -52.49 -0.33 0.55 16 29 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 30 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 31 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.34 4.48 8.72 -39.29 -0.34 4.14 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 36 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 38 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 345.43 15.07 5.21 5.21 Total: -1.00 -31.23 345.43 -8.01 -39.24 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.38 Total: -1.48 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -1.70 Total: -18.04 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.05 Total: -36.32 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: -0.20 Total: -3.53 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.23 -8.01 -39.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602505464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.666 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds