Wall clock time and date at job start Tue Mar 31 2020 05:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35953 * 116.99841 * 2 1 4 4 C 1.38660 * 120.06414 * 0.02562 * 3 2 1 5 5 C 1.38183 * 119.96745 * 179.70752 * 4 3 2 6 6 C 1.38270 * 120.09471 * 0.54889 * 5 4 3 7 7 C 1.50701 * 119.93709 * 179.72849 * 6 5 4 8 8 N 1.46900 * 109.46738 * 269.72583 * 7 6 5 9 9 C 1.46897 * 110.99727 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.46940 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47448 * 304.99654 * 10 9 8 12 12 C 1.53001 * 109.47080 * 65.00472 * 10 9 8 13 13 C 1.53002 * 109.46893 * 184.99774 * 10 9 8 14 14 C 1.50706 * 109.47153 * 174.99718 * 13 10 9 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 C 1.38259 * 120.12395 * 359.44975 * 6 5 4 23 23 C 1.38333 * 120.02976 * 0.27870 * 22 6 5 24 24 F 1.35094 * 120.04360 * 179.97438 * 23 22 6 25 25 H 1.09000 * 109.47407 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47303 * 300.00629 * 1 2 3 27 27 H 1.09004 * 109.46810 * 60.00545 * 1 2 3 28 28 H 1.07994 * 120.01804 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.95635 * 180.29354 * 5 4 3 30 30 H 1.08995 * 109.47182 * 149.72328 * 7 6 5 31 31 H 1.09003 * 109.47063 * 29.72369 * 7 6 5 32 32 H 1.00902 * 111.00039 * 56.04720 * 8 7 6 33 33 H 1.08997 * 109.47423 * 60.00043 * 9 8 7 34 34 H 1.09001 * 109.47481 * 299.99662 * 9 8 7 35 35 H 1.09000 * 109.47309 * 59.99633 * 12 10 9 36 36 H 1.09000 * 109.46932 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.46866 * 299.99538 * 12 10 9 38 38 H 1.09004 * 109.47178 * 55.00508 * 13 10 9 39 39 H 1.08993 * 109.47411 * 295.00191 * 13 10 9 40 40 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 41 41 H 1.08002 * 119.98039 * 180.25474 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9216 3.6053 0.0066 6 6 3.3024 3.6777 0.0008 7 6 3.9851 5.0212 0.0013 8 7 4.2067 5.4583 -1.3836 9 6 4.8713 6.7677 -1.4223 10 6 5.0852 7.1882 -2.8778 11 1 5.6329 6.4071 -3.4050 12 6 3.7283 7.4030 -3.5513 13 6 5.8872 8.4905 -2.9198 14 6 6.2035 8.8398 -4.3513 15 1 5.8659 8.1973 -5.1511 16 6 6.9238 9.9794 -4.6399 17 7 7.3304 10.7645 -3.6663 18 14 7.3153 10.4126 -6.4143 19 1 8.0886 11.6797 -6.4555 20 1 8.1184 9.3225 -7.0244 21 1 6.0502 10.5799 -7.1736 22 6 4.0580 2.5198 0.0002 23 6 3.4333 1.2855 -0.0002 24 9 4.1713 0.1540 -0.0013 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2137 2.3201 0.0005 29 1 1.3342 4.5115 0.0119 30 1 4.9431 4.9417 0.5150 31 1 3.3563 5.7480 0.5155 32 1 3.3399 5.4777 -1.8997 33 1 5.8355 6.7008 -0.9184 34 1 4.2483 7.5065 -0.9181 35 1 3.1806 8.1842 -3.0241 36 1 3.8807 7.7021 -4.5883 37 1 3.1569 6.4752 -3.5214 38 1 6.8157 8.3635 -2.3632 39 1 5.3013 9.2926 -2.4710 40 1 7.1269 10.5397 -2.7449 41 1 5.1364 2.5790 -0.0002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602505476.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:10 Heat of formation + Delta-G solvation = -79.396597 kcal Electronic energy + Delta-G solvation = -21077.582406 eV Core-core repulsion = 17678.437907 eV Total energy + Delta-G solvation = -3399.144499 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.92720 -40.33695 -38.31294 -36.79081 -34.22650 -32.24927 -31.00644 -30.37068 -27.97789 -26.57209 -25.95540 -24.17044 -23.03635 -22.29201 -21.44023 -19.27638 -18.60303 -17.27131 -16.95063 -16.73126 -16.42867 -15.75703 -15.29083 -15.10090 -14.61210 -14.52710 -14.37924 -13.81076 -13.66168 -13.52719 -13.11184 -12.67497 -12.52065 -12.36866 -12.00195 -11.77414 -11.67853 -11.42383 -11.33657 -11.25722 -11.02787 -10.69233 -10.24499 -10.07120 -9.85652 -9.46464 -9.17651 -8.50413 -8.45194 -8.28978 -8.19420 -6.31470 -3.99585 0.88105 0.94880 2.80141 3.25424 3.46118 3.48145 3.66587 3.96734 4.36576 4.38137 4.54827 4.59415 4.72367 4.74661 4.87205 4.98102 5.06660 5.22847 5.28192 5.44675 5.49657 5.63866 5.66402 5.68995 5.81349 5.88055 5.94429 6.13698 6.27019 6.34897 6.37127 6.44789 6.79244 6.95040 7.00730 7.02882 7.21516 7.42840 7.51337 7.62139 8.27637 8.51331 8.93583 9.71779 11.08962 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033524 B = 0.002582 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.028541 B =10843.265527 C =10894.485309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.091 3.909 4 C -0.182 4.182 5 C -0.084 4.084 6 C -0.084 4.084 7 C 0.098 3.902 8 N -0.685 5.685 9 C 0.063 3.937 10 C -0.077 4.077 11 H 0.067 0.933 12 C -0.133 4.133 13 C 0.015 3.985 14 C -0.594 4.594 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.916 5.916 18 Si 1.067 2.933 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.289 1.289 22 C -0.093 4.093 23 C 0.068 3.932 24 F -0.133 7.133 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.340 0.660 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.033 0.967 38 H 0.006 0.994 39 H 0.005 0.995 40 H 0.268 0.732 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.897 -18.514 10.175 25.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.044 3.956 4 C -0.200 4.200 5 C -0.103 4.103 6 C -0.085 4.085 7 C -0.031 4.031 8 N -0.317 5.317 9 C -0.065 4.065 10 C -0.096 4.096 11 H 0.086 0.914 12 C -0.191 4.191 13 C -0.023 4.023 14 C -0.632 4.632 15 H 0.068 0.932 16 C -0.191 4.191 17 N -0.552 5.552 18 Si 0.896 3.104 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.215 1.215 22 C -0.112 4.112 23 C 0.048 3.952 24 F -0.112 7.112 25 H 0.120 0.880 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.155 0.845 29 H 0.148 0.852 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.159 0.841 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.024 0.976 39 H 0.023 0.977 40 H 0.078 0.922 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.446 -17.970 9.150 24.237 hybrid contribution -1.679 -0.654 1.239 2.187 sum -15.125 -18.623 10.389 26.144 Atomic orbital electron populations 1.23109 0.77986 1.04220 1.01518 1.86132 1.21679 1.25905 1.88819 1.19004 0.90832 0.85584 1.00150 1.21077 1.00174 0.91390 1.07386 1.20941 0.94000 0.97307 0.98060 1.19628 0.92999 0.94968 1.00875 1.20854 0.99614 0.91169 0.91442 1.60626 1.29456 1.30224 1.11365 1.22181 0.98070 0.87178 0.99118 1.21086 0.96669 0.99718 0.92157 0.91432 1.21732 0.96520 0.98666 1.02159 1.19241 0.94017 0.91265 0.97761 1.22030 1.38091 1.10901 0.92185 0.93213 1.25823 0.94049 0.93351 1.05879 1.70783 1.44756 1.38793 1.00912 0.83570 0.76381 0.76234 0.74257 1.20865 1.21465 1.21531 1.20939 1.01339 0.89420 0.99527 1.16970 0.85888 0.83045 1.09264 1.91497 1.76410 1.48997 1.94306 0.88000 0.92482 0.92373 0.84549 0.85178 0.89980 0.94262 0.84108 0.91384 0.95745 0.94116 0.91706 0.94817 0.97572 0.97684 0.92201 0.83713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.31 10.36 -19.59 -0.20 -3.52 16 3 C 0.09 1.01 6.69 -39.18 -0.26 0.74 16 4 C -0.18 -1.64 9.04 -39.45 -0.36 -2.00 16 5 C -0.08 -0.79 9.69 -39.59 -0.38 -1.18 16 6 C -0.08 -0.91 5.39 -104.60 -0.56 -1.47 16 7 C 0.10 1.13 5.81 -4.98 -0.03 1.10 16 8 N -0.68 -9.68 6.49 -115.06 -0.75 -10.42 16 9 C 0.06 1.05 5.14 -3.82 -0.02 1.03 16 10 C -0.08 -1.57 2.55 -90.62 -0.23 -1.80 16 11 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 12 C -0.13 -2.48 8.77 37.16 0.33 -2.15 16 13 C 0.01 0.37 3.76 -27.88 -0.10 0.27 16 14 C -0.59 -16.80 8.41 -34.44 -0.29 -17.09 16 15 H 0.05 1.39 7.06 -52.49 -0.37 1.02 16 16 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 17 N -0.92 -28.24 13.65 55.43 0.76 -27.49 16 18 Si 1.07 25.51 29.90 -169.99 -5.08 20.43 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.09 -1.07 9.67 -39.54 -0.38 -1.45 16 23 C 0.07 0.84 7.31 -39.30 -0.29 0.55 16 24 F -0.13 -1.80 17.11 2.25 0.04 -1.77 16 25 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 27 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 28 H 0.14 0.87 6.30 -52.49 -0.33 0.54 16 29 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.34 4.60 6.98 -39.29 -0.27 4.33 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.32 6.95 -51.93 -0.36 0.96 16 37 H 0.03 0.52 6.68 -51.93 -0.35 0.18 16 38 H 0.01 0.16 8.01 -51.93 -0.42 -0.25 16 39 H 0.00 0.13 8.00 -51.93 -0.42 -0.29 16 40 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 41 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -32.03 341.86 -7.97 -40.01 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.20 Total: -0.35 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -1.69 Total: -22.05 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.01 Total: -37.91 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: -0.20 Total: -3.52 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.08 Total: 20.43 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.03 -7.97 -40.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602505476.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.389 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds