Wall clock time and date at job start Tue Mar 31 2020 05:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47312 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47105 * 120.00272 * 9 7 5 12 12 H 1.48501 * 109.47040 * 239.99861 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 O 1.42895 * 109.47135 * 64.99661 * 16 15 14 18 18 C 1.35959 * 117.00421 * 179.97438 * 17 16 15 19 19 C 1.38661 * 120.05878 * 0.02562 * 18 17 16 20 20 C 1.38179 * 119.97010 * 179.97438 * 19 18 17 21 21 C 1.38265 * 120.09408 * 0.02562 * 20 19 18 22 22 C 1.38255 * 120.12723 * 359.97438 * 21 20 19 23 23 C 1.38340 * 120.02638 * 359.70071 * 22 21 20 24 24 F 1.35099 * 120.04317 * 180.27762 * 23 22 21 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 32 32 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 33 33 H 1.00902 * 111.00150 * 56.04186 * 14 13 2 34 34 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 35 35 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 36 36 H 1.08997 * 109.47390 * 185.00282 * 16 15 14 37 37 H 1.09004 * 109.47097 * 305.00370 * 16 15 14 38 38 H 1.08001 * 120.01647 * 359.95240 * 19 18 17 39 39 H 1.07998 * 119.95042 * 179.97438 * 20 19 18 40 40 H 1.07999 * 119.93104 * 179.97438 * 21 20 19 41 41 H 1.07991 * 119.98559 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 0.7433 1.7749 -4.8434 11 1 2.7182 0.9681 -5.9958 12 1 0.6461 -0.2856 -6.1189 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 8 0.2779 0.1956 4.9902 18 6 -0.2654 0.8827 6.0301 19 6 0.5563 1.5394 6.9335 20 6 0.0023 2.2375 7.9894 21 6 -1.3707 2.2820 8.1468 22 6 -2.1937 1.6286 7.2484 23 6 -1.6447 0.9337 6.1856 24 9 -2.4488 0.2998 5.3042 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 2.9246 -1.8413 -4.7316 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 0.6528 0.1793 2.4752 34 1 1.6920 -1.6245 3.7300 35 1 3.2126 -0.7037 3.6401 36 1 2.1301 -0.2521 5.7887 37 1 2.0628 1.2151 4.7832 38 1 1.6290 1.5049 6.8122 39 1 0.6426 2.7486 8.6931 40 1 -1.8009 2.8281 8.9733 41 1 -3.2657 1.6645 7.3737 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602507415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:23 Heat of formation + Delta-G solvation = -76.254191 kcal Electronic energy + Delta-G solvation = -21148.811702 eV Core-core repulsion = 17749.803468 eV Total energy + Delta-G solvation = -3399.008234 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.92661 -40.27392 -37.96870 -36.76595 -34.09522 -32.11139 -31.02191 -30.36236 -28.81178 -26.75476 -25.22529 -23.72653 -22.77184 -22.29266 -21.44841 -18.94167 -18.76276 -17.31457 -16.85097 -16.53712 -16.38909 -15.66861 -15.38763 -15.17807 -14.72104 -14.56793 -14.30569 -13.99018 -13.53470 -13.24518 -12.91570 -12.60765 -12.31084 -12.19380 -12.02668 -11.87146 -11.59922 -11.39927 -11.24881 -11.13013 -10.84419 -10.71303 -10.29253 -10.15034 -9.68667 -9.27740 -9.12108 -8.92350 -8.47356 -8.30663 -8.17027 -5.95177 -3.95982 0.79679 0.95024 2.82856 3.26095 3.34198 3.41659 3.46194 3.97365 4.29859 4.39106 4.48981 4.51689 4.76981 4.87659 4.91461 5.03152 5.12664 5.15021 5.40763 5.53278 5.62439 5.67441 5.73646 5.80679 5.84783 5.87183 6.03970 6.11213 6.30010 6.34901 6.51264 6.60981 6.96078 7.05308 7.15634 7.20783 7.35463 7.66253 7.73023 7.89170 8.05458 8.49589 9.10622 9.67342 11.16461 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.002705 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.197945 B =10350.215706 C =10802.521106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.691 5.691 15 C 0.060 3.940 16 C 0.059 3.941 17 O -0.306 6.306 18 C 0.106 3.894 19 C -0.184 4.184 20 C -0.090 4.090 21 C -0.134 4.134 22 C -0.118 4.118 23 C 0.066 3.934 24 F -0.131 7.131 25 H 0.032 0.968 26 H 0.062 0.938 27 H 0.041 0.959 28 H 0.015 0.985 29 H 0.014 0.986 30 H 0.259 0.741 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.346 0.654 34 H 0.038 0.962 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 5.471 26.480 27.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.324 5.324 15 C -0.070 4.070 16 C -0.016 4.016 17 O -0.219 6.219 18 C 0.059 3.941 19 C -0.203 4.203 20 C -0.109 4.109 21 C -0.153 4.153 22 C -0.136 4.136 23 C 0.046 3.954 24 F -0.110 7.110 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.166 0.834 34 H 0.056 0.944 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.382 5.635 26.116 27.074 hybrid contribution -0.732 -0.387 -0.929 1.244 sum -5.114 5.248 25.186 26.231 Atomic orbital electron populations 1.21743 0.96608 1.00512 1.00336 1.21218 0.94951 1.00032 0.94068 0.91668 1.19120 0.96100 0.95406 0.90390 1.21284 1.34439 1.08236 0.90972 0.92496 1.25027 0.95366 0.95118 0.99117 1.69976 1.39203 1.21327 1.23235 0.86571 0.78237 0.80143 0.83275 1.19735 1.21104 1.21124 1.22155 1.00262 0.94577 0.89526 1.60636 1.20620 1.49976 1.01144 1.21992 1.00823 0.95394 0.88798 1.23077 0.77737 1.01975 0.98771 1.86142 1.23794 1.67899 1.44077 1.19049 0.91312 0.94406 0.89333 1.21217 1.00254 1.02012 0.96808 1.21026 0.95186 0.97659 0.96986 1.20918 0.93302 1.01103 0.99956 1.21042 1.01264 0.97752 0.93574 1.17063 0.85265 1.00932 0.92131 1.91525 1.72375 1.80007 1.67066 0.94878 0.91864 0.94004 0.96664 0.96724 0.93181 0.95694 0.91435 0.83409 0.94360 0.88927 0.91568 0.90649 0.84404 0.85109 0.84950 0.84149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 8.77 37.16 0.33 -2.33 16 2 C -0.08 -1.77 2.55 -90.62 -0.23 -2.00 16 3 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.54 8.41 -34.44 -0.29 -14.83 16 6 H 0.06 1.59 7.06 -52.49 -0.37 1.22 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 9 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 13 C 0.06 1.13 5.14 -3.83 -0.02 1.11 16 14 N -0.69 -10.58 6.50 -113.78 -0.74 -11.32 16 15 C 0.06 0.72 6.11 -3.82 -0.02 0.69 16 16 C 0.06 0.61 5.08 37.16 0.19 0.80 16 17 O -0.31 -3.90 9.52 -19.61 -0.19 -4.08 16 18 C 0.11 1.21 6.69 -39.18 -0.26 0.95 16 19 C -0.18 -1.60 9.04 -39.45 -0.36 -1.96 16 20 C -0.09 -0.64 10.04 -39.59 -0.40 -1.04 16 21 C -0.13 -0.94 10.04 -39.57 -0.40 -1.34 16 22 C -0.12 -1.02 10.02 -39.54 -0.40 -1.41 16 23 C 0.07 0.77 7.31 -39.30 -0.29 0.48 16 24 F -0.13 -1.80 17.11 2.25 0.04 -1.76 16 25 H 0.03 0.57 6.68 -51.93 -0.35 0.22 16 26 H 0.06 1.33 6.95 -51.93 -0.36 0.97 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 33 H 0.35 5.50 6.54 -39.29 -0.26 5.24 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16 37 H 0.08 0.74 7.66 -51.93 -0.40 0.34 16 38 H 0.14 0.95 6.30 -52.49 -0.33 0.62 16 39 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 40 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 41 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -31.74 342.85 -8.62 -40.36 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.25 Total: 0.05 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -2.37 Total: -18.82 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.00 Total: -37.89 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.19 Total: -4.08 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.74 -8.62 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602507415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.897 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds