Wall clock time and date at job start Tue Mar 31 2020 05:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46916 * 2 1 4 4 C 1.52992 * 109.47004 * 120.00137 * 2 1 3 5 5 C 1.50711 * 109.47037 * 294.99945 * 4 2 1 6 6 H 1.07999 * 119.99683 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99738 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00276 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99813 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47191 * 60.00070 * 9 7 5 11 11 H 1.48505 * 109.47076 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47117 * 299.99749 * 9 7 5 13 13 C 1.52995 * 109.47109 * 240.00105 * 2 1 3 14 14 N 1.46902 * 109.47308 * 64.99906 * 13 2 1 15 15 C 1.46900 * 111.00308 * 180.02562 * 14 13 2 16 16 C 1.53004 * 109.47207 * 180.02562 * 15 14 13 17 17 O 1.42893 * 109.47267 * 64.99934 * 16 15 14 18 18 C 1.35956 * 117.00026 * 179.97438 * 17 16 15 19 19 C 1.38657 * 120.06128 * 359.97438 * 18 17 16 20 20 C 1.38184 * 119.96964 * 180.02562 * 19 18 17 21 21 C 1.38265 * 120.09281 * 359.97438 * 20 19 18 22 22 C 1.38248 * 120.12705 * 0.02562 * 21 20 19 23 23 C 1.38332 * 120.03366 * 359.97438 * 22 21 20 24 24 F 1.35103 * 120.05240 * 180.02562 * 23 22 21 25 25 H 1.09004 * 109.47257 * 60.00020 * 1 2 3 26 26 H 1.08998 * 109.46916 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46908 * 300.00267 * 1 2 3 28 28 H 1.09000 * 109.47580 * 54.99940 * 4 2 1 29 29 H 1.09002 * 109.47074 * 175.00401 * 4 2 1 30 30 H 0.97003 * 119.99886 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47466 * 305.00121 * 13 2 1 32 32 H 1.09002 * 109.47142 * 184.99714 * 13 2 1 33 33 H 1.00897 * 111.00090 * 303.95259 * 14 13 2 34 34 H 1.08997 * 109.47263 * 59.99365 * 15 14 13 35 35 H 1.09007 * 109.46933 * 299.99823 * 15 14 13 36 36 H 1.08994 * 109.46599 * 304.99408 * 16 15 14 37 37 H 1.09001 * 109.46881 * 185.00066 * 16 15 14 38 38 H 1.08004 * 120.01774 * 0.03769 * 19 18 17 39 39 H 1.08000 * 119.95526 * 180.27319 * 20 19 18 40 40 H 1.08001 * 119.93128 * 179.97438 * 21 20 19 41 41 H 1.07998 * 119.98480 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0807 0.9746 2.3756 7 6 1.9932 -0.4017 3.7282 8 7 2.6764 -1.5188 3.8511 9 14 1.4984 0.5627 5.2496 10 1 0.0183 0.6681 5.3092 11 1 1.9935 -0.1373 6.4622 12 1 2.0895 1.9236 5.1871 13 6 2.0400 -0.7212 -1.2492 14 7 1.6514 0.0375 -2.4456 15 6 2.1248 -0.6271 -3.6672 16 6 1.7024 0.1911 -4.8892 17 8 2.3645 1.4572 -4.8668 18 6 2.0978 2.3114 -5.8904 19 6 1.2179 1.9384 -6.8950 20 6 0.9486 2.8079 -7.9347 21 6 1.5550 4.0498 -7.9745 22 6 2.4329 4.4258 -6.9749 23 6 2.7063 3.5595 -5.9316 24 9 3.5638 3.9266 -4.9543 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6054 -1.7198 1.2951 29 1 3.1263 -0.7994 1.2056 30 1 2.9242 -1.8413 4.7317 31 1 1.6054 -1.7197 -1.2952 32 1 3.1264 -0.7994 -1.2056 33 1 0.6529 0.1793 -2.4753 34 1 1.6905 -1.6248 -3.7297 35 1 3.2117 -0.7050 -3.6406 36 1 0.6236 0.3447 -4.8683 37 1 1.9754 -0.3457 -5.7978 38 1 0.7431 0.9688 -6.8648 39 1 0.2598 2.5189 -8.7147 40 1 1.3429 4.7272 -8.7885 41 1 2.9049 5.3966 -7.0080 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602507416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:25 Heat of formation + Delta-G solvation = -73.642757 kcal Electronic energy + Delta-G solvation = -21091.731293 eV Core-core repulsion = 17692.836300 eV Total energy + Delta-G solvation = -3398.894993 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.82654 -40.19439 -37.89980 -36.79750 -34.11956 -32.11119 -30.96978 -30.33133 -28.77423 -26.77410 -25.22880 -23.69318 -22.69405 -22.27069 -21.53170 -18.93921 -18.71175 -17.32403 -16.79520 -16.49891 -16.27889 -15.59799 -15.38034 -15.09785 -14.60960 -14.55938 -14.18427 -13.96807 -13.49095 -13.38697 -12.97097 -12.59299 -12.35205 -12.19479 -12.04730 -11.79204 -11.58820 -11.33962 -11.21599 -11.08794 -10.85063 -10.71639 -10.31311 -10.18135 -9.68768 -9.22910 -9.12411 -8.94584 -8.39530 -8.29711 -8.13977 -5.94608 -3.95641 0.84512 1.00789 2.90198 3.31030 3.37098 3.41094 3.44056 4.04138 4.27861 4.42698 4.51830 4.52808 4.76346 4.89652 4.90675 4.95057 5.10326 5.21792 5.41073 5.43325 5.66437 5.70546 5.77980 5.78740 5.86705 5.89474 6.07456 6.07896 6.25695 6.40253 6.48306 6.58138 6.94211 7.12806 7.14551 7.20101 7.35797 7.63337 7.73066 7.89149 8.05677 8.49676 9.10433 9.67573 11.16933 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027391 B = 0.002738 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.973194 B =10224.002121 C =10708.402982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 H 0.066 0.934 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.065 3.935 14 N -0.684 5.684 15 C 0.057 3.943 16 C 0.063 3.937 17 O -0.285 6.285 18 C 0.104 3.896 19 C -0.189 4.189 20 C -0.091 4.091 21 C -0.136 4.136 22 C -0.118 4.118 23 C 0.068 3.932 24 F -0.129 7.129 25 H 0.031 0.969 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.014 0.986 29 H 0.015 0.985 30 H 0.260 0.740 31 H 0.023 0.977 32 H 0.068 0.932 33 H 0.337 0.663 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.779 5.969 -26.253 27.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.064 4.064 14 N -0.316 5.316 15 C -0.072 4.072 16 C -0.012 4.012 17 O -0.198 6.198 18 C 0.057 3.943 19 C -0.207 4.207 20 C -0.109 4.109 21 C -0.155 4.155 22 C -0.136 4.136 23 C 0.048 3.952 24 F -0.108 7.108 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.156 0.844 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.994 6.290 -25.863 26.784 hybrid contribution -0.861 -0.409 0.906 1.316 sum -3.855 5.880 -24.956 25.928 Atomic orbital electron populations 1.21741 0.96736 1.00330 1.00280 1.21223 0.94813 1.00237 0.94083 0.91527 1.19107 0.96165 0.95308 0.90350 1.21209 1.34658 1.08244 0.91000 0.92609 1.25019 0.95344 0.95104 0.99089 1.69959 1.39080 1.21257 1.23457 0.86687 0.78830 0.80186 0.82462 1.20333 1.21386 1.20238 1.22153 1.00515 0.94230 0.89457 1.60538 1.19419 1.50539 1.01143 1.21997 1.02281 0.94020 0.88934 1.22973 0.96755 0.82489 0.99033 1.86332 1.65128 1.26254 1.42069 1.19152 0.95663 0.90130 0.89354 1.21189 1.01651 1.02047 0.95860 1.21002 0.98865 0.93506 0.97560 1.20894 0.98256 0.97132 0.99199 1.21043 0.99622 0.99638 0.93342 1.17061 0.95676 0.92595 0.89881 1.91539 1.67412 1.91434 1.60380 0.95039 0.94070 0.91832 0.96783 0.96632 0.93064 0.95832 0.91332 0.84441 0.93160 0.89807 0.91923 0.91588 0.84643 0.85244 0.85031 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.77 37.16 0.33 -2.20 16 2 C -0.08 -1.78 2.54 -90.62 -0.23 -2.01 16 3 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 4 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.61 8.41 -34.44 -0.29 -14.90 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.06 1.14 5.14 -3.83 -0.02 1.12 16 14 N -0.68 -10.34 6.45 -113.78 -0.73 -11.08 16 15 C 0.06 0.68 6.07 -3.82 -0.02 0.66 16 16 C 0.06 0.64 5.02 37.16 0.19 0.83 16 17 O -0.29 -3.88 9.95 -19.60 -0.20 -4.07 16 18 C 0.10 1.25 6.69 -39.18 -0.26 0.99 16 19 C -0.19 -1.69 9.04 -39.45 -0.36 -2.04 16 20 C -0.09 -0.67 10.04 -39.59 -0.40 -1.07 16 21 C -0.14 -1.00 10.04 -39.57 -0.40 -1.40 16 22 C -0.12 -1.08 10.02 -39.54 -0.40 -1.47 16 23 C 0.07 0.84 7.31 -39.30 -0.29 0.55 16 24 F -0.13 -1.90 17.11 2.25 0.04 -1.87 16 25 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.34 4.74 6.98 -39.29 -0.27 4.46 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 1.06 8.14 -51.92 -0.42 0.63 16 36 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 37 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16 38 H 0.14 0.93 6.30 -52.48 -0.33 0.60 16 39 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 40 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 343.58 15.07 5.18 5.18 Total: -1.00 -32.36 343.58 -8.63 -40.99 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.26 Total: -0.73 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -2.37 Total: -18.83 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.00 Total: -37.68 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.20 Total: -4.07 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.36 -8.63 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602507416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.650 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds