Wall clock time and date at job start Tue Mar 31 2020 05:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47312 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47105 * 120.00272 * 9 7 5 12 12 H 1.48501 * 109.47040 * 239.99861 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 O 1.42895 * 109.47135 * 64.99661 * 16 15 14 18 18 C 1.35946 * 117.00230 * 179.97438 * 17 16 15 19 19 C 1.38707 * 120.02696 * 359.73042 * 18 17 16 20 20 C 1.38149 * 119.96461 * 179.78943 * 19 18 17 21 21 C 1.38452 * 120.03439 * 0.48265 * 20 19 18 22 22 F 1.35100 * 119.97085 * 179.72085 * 21 20 19 23 23 C 1.38458 * 120.06032 * 359.74646 * 21 20 19 24 24 C 1.38149 * 120.02829 * 0.02562 * 23 21 20 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 32 32 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 33 33 H 1.00902 * 111.00150 * 56.04186 * 14 13 2 34 34 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 35 35 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 36 36 H 1.08997 * 109.47390 * 185.00282 * 16 15 14 37 37 H 1.09004 * 109.47097 * 305.00370 * 16 15 14 38 38 H 1.07995 * 120.01294 * 359.97438 * 19 18 17 39 39 H 1.08003 * 119.98335 * 180.20470 * 20 19 18 40 40 H 1.08000 * 119.98714 * 179.97438 * 23 21 20 41 41 H 1.08000 * 120.01734 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 0.7433 1.7749 -4.8434 11 1 2.7182 0.9681 -5.9958 12 1 0.6461 -0.2856 -6.1189 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 8 0.2779 0.1956 4.9902 18 6 -0.2653 0.8826 6.0300 19 6 0.5576 1.5342 6.9368 20 6 0.0041 2.2356 7.9905 21 6 -1.3708 2.2800 8.1473 22 9 -1.9104 2.9616 9.1814 23 6 -2.1932 1.6261 7.2455 24 6 -1.6426 0.9279 6.1882 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 2.9246 -1.8413 -4.7316 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 0.6528 0.1793 2.4752 34 1 1.6920 -1.6245 3.7300 35 1 3.2126 -0.7037 3.6401 36 1 2.1301 -0.2521 5.7887 37 1 2.0628 1.2151 4.7832 38 1 1.6302 1.4956 6.8175 39 1 0.6444 2.7458 8.6949 40 1 -3.2655 1.6613 7.3692 41 1 -2.2842 0.4176 5.4852 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602511535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:28 Heat of formation + Delta-G solvation = -78.138443 kcal Electronic energy + Delta-G solvation = -20803.102075 eV Core-core repulsion = 17404.012134 eV Total energy + Delta-G solvation = -3399.089941 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.08962 -40.38636 -37.83840 -36.73685 -34.10250 -32.13942 -31.58702 -30.00837 -28.69912 -26.78344 -25.24632 -23.80820 -22.84606 -22.29294 -21.46936 -18.96818 -18.69074 -17.64385 -16.89388 -16.42222 -16.38730 -15.78809 -15.41483 -15.07864 -14.70068 -14.53823 -14.09682 -13.97675 -13.64340 -13.48577 -13.08162 -12.74952 -12.63110 -12.17946 -12.07982 -11.91068 -11.63209 -11.34885 -11.09477 -11.02068 -10.86752 -10.73574 -10.31790 -10.18145 -9.71759 -9.54061 -9.14987 -8.94852 -8.39411 -8.32854 -8.20107 -5.97334 -3.98262 0.81039 0.90321 2.89673 3.24688 3.32515 3.40148 3.44382 3.99887 4.27355 4.33515 4.43113 4.49686 4.72715 4.80166 4.98546 5.02210 5.11972 5.18891 5.38629 5.48694 5.58782 5.63673 5.77218 5.77353 5.81748 5.83800 5.91112 6.07017 6.26101 6.37730 6.47247 6.56748 6.92614 7.07894 7.11982 7.17598 7.32180 7.63385 7.70569 7.86389 8.03129 8.47086 9.08356 9.65187 11.14251 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034475 B = 0.002401 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.978044 B =11657.663436 C =12144.110833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.691 5.691 15 C 0.060 3.940 16 C 0.059 3.941 17 O -0.310 6.310 18 C 0.130 3.870 19 C -0.183 4.183 20 C -0.112 4.112 21 C 0.052 3.948 22 F -0.144 7.144 23 C -0.112 4.112 24 C -0.126 4.126 25 H 0.041 0.959 26 H 0.032 0.968 27 H 0.062 0.938 28 H 0.015 0.985 29 H 0.014 0.986 30 H 0.259 0.741 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.346 0.654 34 H 0.038 0.962 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.175 4.100 24.511 25.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.323 5.323 15 C -0.070 4.070 16 C -0.016 4.016 17 O -0.223 6.223 18 C 0.084 3.916 19 C -0.201 4.201 20 C -0.131 4.131 21 C 0.033 3.967 22 F -0.122 7.122 23 C -0.131 4.131 24 C -0.144 4.144 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.165 0.835 34 H 0.056 0.944 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.159 0.841 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.661 4.319 24.228 25.047 hybrid contribution -0.658 -0.130 -0.570 0.880 sum -5.320 4.189 23.658 24.607 Atomic orbital electron populations 1.21742 0.96636 1.00468 1.00324 1.21218 0.94933 1.00057 0.94079 0.91655 1.19120 0.96121 0.95395 0.90395 1.21278 1.34488 1.08241 0.90964 0.92498 1.25028 0.95359 0.95116 0.99131 1.69974 1.39161 1.21315 1.23257 0.86572 0.78249 0.80132 0.83271 1.19743 1.21097 1.21123 1.22155 1.00302 0.94544 0.89518 1.60626 1.20529 1.50040 1.01148 1.21994 1.00857 0.95362 0.88804 1.23053 0.77975 1.01929 0.98680 1.86096 1.23598 1.68083 1.44529 1.19045 0.92728 0.92203 0.87594 1.21159 1.00542 1.01953 0.96476 1.20935 0.93242 0.99987 0.98939 1.17577 0.91760 0.98935 0.88441 1.91485 1.86482 1.77959 1.56315 1.20965 1.00517 0.97576 0.94064 1.20339 0.92260 1.02353 0.99464 0.94020 0.94890 0.91862 0.96663 0.96734 0.93167 0.95701 0.91441 0.83473 0.94374 0.89009 0.91634 0.90714 0.84370 0.84561 0.84111 0.84019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.77 37.16 0.33 -2.20 16 2 C -0.08 -1.71 2.55 -90.62 -0.23 -1.94 16 3 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.32 8.41 -34.44 -0.29 -14.61 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.06 1.08 5.14 -3.83 -0.02 1.06 16 14 N -0.69 -9.92 6.50 -113.78 -0.74 -10.66 16 15 C 0.06 0.66 6.11 -3.82 -0.02 0.64 16 16 C 0.06 0.55 5.08 37.16 0.19 0.74 16 17 O -0.31 -3.40 9.66 -19.57 -0.19 -3.59 16 18 C 0.13 1.31 6.69 -39.23 -0.26 1.05 16 19 C -0.18 -1.58 9.04 -39.44 -0.36 -1.93 16 20 C -0.11 -0.95 10.02 -39.53 -0.40 -1.34 16 21 C 0.05 0.49 7.30 -39.42 -0.29 0.20 16 22 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 23 C -0.11 -0.96 10.02 -39.53 -0.40 -1.36 16 24 C -0.13 -1.15 9.99 -39.44 -0.39 -1.55 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.53 6.68 -51.93 -0.35 0.18 16 27 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 33 H 0.35 5.01 6.54 -39.29 -0.26 4.76 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.47 7.65 -51.93 -0.40 0.07 16 37 H 0.07 0.68 7.68 -51.93 -0.40 0.29 16 38 H 0.14 0.94 6.30 -52.49 -0.33 0.61 16 39 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 343.04 15.07 5.17 5.17 Total: -1.00 -30.55 343.04 -8.61 -39.16 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.25 Total: 0.09 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -2.36 Total: -19.22 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.00 Total: -36.91 kcal Atomic # 8 Polarization: -3.40 SS G_CDS: -0.19 Total: -3.59 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.55 -8.61 -39.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602511535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.977 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds