Wall clock time and date at job start Tue Mar 31 2020 05:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46807 * 2 1 4 4 C 1.52996 * 109.46840 * 119.99720 * 2 1 3 5 5 C 1.50703 * 109.47343 * 295.00056 * 4 2 1 6 6 H 1.07997 * 119.99829 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00190 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99801 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99911 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46965 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47298 * 120.00108 * 9 7 5 12 12 H 1.48509 * 109.47059 * 239.99745 * 9 7 5 13 13 C 1.53003 * 109.47203 * 239.99593 * 2 1 3 14 14 N 1.46903 * 109.46899 * 65.00435 * 13 2 1 15 15 C 1.46898 * 110.99673 * 179.97438 * 14 13 2 16 16 C 1.53006 * 109.47006 * 179.97438 * 15 14 13 17 17 O 1.42897 * 109.46881 * 64.99925 * 16 15 14 18 18 C 1.35943 * 117.00017 * 179.97438 * 17 16 15 19 19 C 1.38704 * 120.03060 * 359.73027 * 18 17 16 20 20 C 1.38153 * 119.97208 * 179.79133 * 19 18 17 21 21 C 1.38458 * 120.02613 * 0.47647 * 20 19 18 22 22 F 1.35098 * 119.96852 * 179.72546 * 21 20 19 23 23 C 1.38448 * 120.06280 * 359.75151 * 21 20 19 24 24 C 1.38152 * 120.02954 * 0.02562 * 23 21 20 25 25 H 1.09001 * 109.47566 * 300.00626 * 1 2 3 26 26 H 1.08999 * 109.46977 * 60.00342 * 1 2 3 27 27 H 1.09001 * 109.47262 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47346 * 55.00190 * 4 2 1 29 29 H 1.09001 * 109.47187 * 175.00039 * 4 2 1 30 30 H 0.97006 * 119.99569 * 179.97438 * 8 7 5 31 31 H 1.08993 * 109.47042 * 305.00375 * 13 2 1 32 32 H 1.08995 * 109.46589 * 184.99616 * 13 2 1 33 33 H 1.00906 * 110.99345 * 303.95072 * 14 13 2 34 34 H 1.09001 * 109.47062 * 59.99745 * 15 14 13 35 35 H 1.08993 * 109.47084 * 299.99192 * 15 14 13 36 36 H 1.08992 * 109.47046 * 184.99823 * 16 15 14 37 37 H 1.08997 * 109.47395 * 305.00364 * 16 15 14 38 38 H 1.08004 * 120.01304 * 359.97438 * 19 18 17 39 39 H 1.07999 * 119.98821 * 180.20504 * 20 19 18 40 40 H 1.08004 * 119.98667 * 179.97438 * 23 21 20 41 41 H 1.08001 * 120.01307 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4015 3.7283 8 7 2.6762 -1.5186 3.8512 9 14 1.4982 0.5629 5.2496 10 1 0.7409 1.7740 4.8433 11 1 0.6449 -0.2867 6.1185 12 1 2.7161 0.9686 5.9964 13 6 2.0400 -0.7213 -1.2492 14 7 1.6515 0.0373 -2.4456 15 6 2.1259 -0.6267 -3.6671 16 6 1.7026 0.1907 -4.8892 17 8 2.3629 1.4578 -4.8668 18 6 2.0952 2.3115 -5.8903 19 6 1.2195 1.9345 -6.8977 20 6 0.9450 2.8047 -7.9350 21 6 1.5512 4.0488 -7.9745 22 9 1.2862 4.8967 -8.9923 23 6 2.4292 4.4246 -6.9721 24 6 2.7019 3.5582 -5.9312 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6053 -1.7197 1.2952 29 1 3.1262 -0.7994 1.2057 30 1 2.9241 -1.8411 4.7319 31 1 1.6054 -1.7198 -1.2951 32 1 3.1263 -0.7994 -1.2055 33 1 0.6529 0.1792 -2.4753 34 1 1.6922 -1.6247 -3.7299 35 1 3.2128 -0.7038 -3.6399 36 1 1.9764 -0.3457 -5.7977 37 1 0.6235 0.3431 -4.8685 38 1 0.7501 0.9621 -6.8696 39 1 0.2606 2.5126 -8.7178 40 1 2.9017 5.3953 -7.0043 41 1 3.3872 3.8514 -5.1497 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602511536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:30 Heat of formation + Delta-G solvation = -75.876750 kcal Electronic energy + Delta-G solvation = -20762.636417 eV Core-core repulsion = 17363.644551 eV Total energy + Delta-G solvation = -3398.991867 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.05117 -40.30720 -37.77526 -36.75695 -34.12621 -32.13891 -31.53919 -29.98385 -28.65336 -26.79775 -25.24145 -23.78622 -22.77868 -22.25353 -21.55791 -18.97038 -18.65075 -17.63133 -16.88501 -16.46183 -16.17821 -15.70545 -15.52546 -15.00763 -14.63083 -14.34683 -14.07678 -13.93794 -13.67497 -13.54805 -13.11250 -12.74671 -12.63660 -12.32083 -12.10772 -11.76646 -11.61468 -11.34589 -11.03886 -10.96633 -10.87321 -10.74613 -10.32239 -10.19547 -9.72286 -9.49514 -9.15496 -8.95108 -8.32928 -8.32593 -8.17729 -5.97392 -3.98316 0.85581 0.95840 2.96827 3.29786 3.32536 3.40191 3.44414 4.04091 4.25659 4.37536 4.46834 4.49685 4.72541 4.82640 4.87989 5.02401 5.11705 5.24228 5.38606 5.44450 5.58775 5.65828 5.75550 5.80828 5.83616 5.88097 5.96670 6.04665 6.23147 6.42153 6.45665 6.55151 6.91182 7.10292 7.16463 7.17496 7.32812 7.59933 7.70622 7.86171 8.03047 8.46989 9.08288 9.65166 11.14191 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030662 B = 0.002421 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.965643 B =11561.730227 C =12045.192876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.066 0.934 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.684 5.684 15 C 0.057 3.943 16 C 0.062 3.938 17 O -0.289 6.289 18 C 0.130 3.870 19 C -0.187 4.187 20 C -0.112 4.112 21 C 0.050 3.950 22 F -0.144 7.144 23 C -0.112 4.112 24 C -0.124 4.124 25 H 0.063 0.937 26 H 0.031 0.969 27 H 0.040 0.960 28 H 0.014 0.986 29 H 0.015 0.985 30 H 0.259 0.741 31 H 0.023 0.977 32 H 0.068 0.932 33 H 0.337 0.663 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.630 5.501 -24.235 24.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.085 0.915 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.317 5.317 15 C -0.073 4.073 16 C -0.013 4.013 17 O -0.202 6.202 18 C 0.083 3.917 19 C -0.206 4.206 20 C -0.131 4.131 21 C 0.030 3.970 22 F -0.123 7.123 23 C -0.131 4.131 24 C -0.143 4.143 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.156 0.844 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.897 5.849 -23.934 24.712 hybrid contribution -1.075 -0.359 0.539 1.255 sum -2.972 5.490 -23.395 24.214 Atomic orbital electron populations 1.21743 0.96733 1.00361 1.00300 1.21220 0.94818 1.00192 0.94080 0.91542 1.19118 0.96169 0.95345 0.90396 1.21276 1.34475 1.08257 0.90963 0.92503 1.25027 0.95364 0.95109 0.99132 1.69979 1.39191 1.21281 1.23255 0.86571 0.78266 0.80120 0.83266 1.19740 1.21141 1.21076 1.22154 1.00491 0.94277 0.89471 1.60541 1.19453 1.50521 1.01149 1.21998 1.02222 0.94082 0.88950 1.22952 0.96796 0.82638 0.98939 1.86284 1.65187 1.26188 1.42531 1.19141 0.94088 0.90831 0.87639 1.21137 1.02241 1.01467 0.95766 1.20913 1.00306 0.92472 0.99447 1.17565 1.01570 0.89597 0.88227 1.91480 1.93076 1.70024 1.57743 1.20973 0.98045 1.00740 0.93306 1.20359 1.02491 0.91568 0.99869 0.91829 0.95013 0.94062 0.96775 0.96629 0.93169 0.95831 0.91338 0.84407 0.93250 0.89811 0.91654 0.91987 0.84604 0.84690 0.84141 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.77 37.16 0.33 -2.14 16 2 C -0.08 -1.71 2.55 -90.62 -0.23 -1.94 16 3 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.31 8.41 -34.44 -0.29 -14.60 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.06 1.09 5.14 -3.82 -0.02 1.07 16 14 N -0.68 -9.69 6.45 -113.78 -0.73 -10.43 16 15 C 0.06 0.63 6.07 -3.82 -0.02 0.60 16 16 C 0.06 0.58 5.02 37.16 0.19 0.76 16 17 O -0.29 -3.42 10.08 -19.56 -0.20 -3.62 16 18 C 0.13 1.37 6.69 -39.24 -0.26 1.11 16 19 C -0.19 -1.66 9.04 -39.44 -0.36 -2.01 16 20 C -0.11 -0.98 10.02 -39.53 -0.40 -1.37 16 21 C 0.05 0.48 7.30 -39.42 -0.29 0.20 16 22 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 23 C -0.11 -1.01 10.02 -39.54 -0.40 -1.41 16 24 C -0.12 -1.23 9.98 -39.44 -0.39 -1.62 16 25 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 26 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.34 4.48 6.98 -39.29 -0.27 4.20 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.46 7.65 -51.93 -0.40 0.06 16 37 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 38 H 0.14 0.92 6.30 -52.48 -0.33 0.59 16 39 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.14 0.98 8.06 -52.48 -0.42 0.55 16 41 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 343.75 15.07 5.18 5.18 Total: -1.00 -30.94 343.75 -8.62 -39.57 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.26 Total: -0.38 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -2.36 Total: -19.32 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.00 Total: -36.67 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: -0.20 Total: -3.62 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.94 -8.62 -39.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602511536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.308 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds