Wall clock time and date at job start Tue Mar 31 2020 05:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33380 * 125.20556 * 2 1 4 4 C 1.38427 * 114.92436 * 180.02562 * 3 2 1 5 5 C 1.50704 * 122.53972 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.46361 * 145.02542 * 5 4 3 7 7 C 1.52998 * 109.47463 * 265.02827 * 5 4 3 8 8 N 1.46897 * 109.46934 * 25.03147 * 5 4 3 9 9 C 1.46905 * 111.00138 * 155.00008 * 8 5 4 10 10 C 1.52999 * 109.47028 * 179.97438 * 9 8 5 11 11 H 1.08996 * 109.46929 * 304.98924 * 10 9 8 12 12 C 1.52997 * 109.47317 * 64.99820 * 10 9 8 13 13 C 1.53006 * 109.46623 * 184.99640 * 10 9 8 14 14 C 1.50703 * 109.46967 * 174.99771 * 13 10 9 15 15 H 1.07996 * 119.99755 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00135 * 179.97438 * 14 13 10 17 17 N 1.31512 * 119.99773 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99975 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47237 * 90.00441 * 18 16 14 20 20 H 1.48506 * 109.47247 * 210.00240 * 18 16 14 21 21 H 1.48500 * 109.47404 * 330.00197 * 18 16 14 22 22 C 1.33391 * 114.91828 * 0.25320 * 4 3 2 23 23 C 1.50700 * 125.20078 * 179.75660 * 22 4 3 24 24 S 1.75882 * 109.59213 * 359.62819 * 22 4 3 25 25 H 1.08999 * 109.47428 * 89.99806 * 1 2 3 26 26 H 1.09005 * 109.47350 * 209.99694 * 1 2 3 27 27 H 1.08993 * 109.47400 * 329.99952 * 1 2 3 28 28 H 1.08002 * 122.53890 * 0.05899 * 3 2 1 29 29 H 1.08999 * 109.47040 * 59.99894 * 7 5 4 30 30 H 1.08992 * 109.47065 * 180.02562 * 7 5 4 31 31 H 1.09004 * 109.46776 * 300.00361 * 7 5 4 32 32 H 1.00906 * 110.99758 * 278.94882 * 8 5 4 33 33 H 1.08994 * 109.47305 * 59.99331 * 9 8 5 34 34 H 1.08998 * 109.46287 * 299.99779 * 9 8 5 35 35 H 1.09002 * 109.47153 * 299.99641 * 12 10 9 36 36 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 37 37 H 1.09004 * 109.47261 * 59.99813 * 12 10 9 38 38 H 1.09001 * 109.47326 * 294.99995 * 13 10 9 39 39 H 1.09000 * 109.46904 * 55.00348 * 13 10 9 40 40 H 0.97000 * 120.00259 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.47034 * 89.99622 * 23 22 4 42 42 H 1.08995 * 109.46718 * 209.99667 * 23 22 4 43 43 H 1.08997 * 109.46945 * 329.99704 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0898 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 4.6623 1.9482 -0.0012 6 1 5.5271 1.6423 0.5875 7 6 5.1001 2.2371 -1.4385 8 7 4.0749 3.1603 0.5848 9 6 5.1163 4.0326 1.1441 10 6 4.4675 5.2819 1.7433 11 1 3.8520 5.7697 0.9875 12 6 3.5928 4.8817 2.9330 13 6 5.5577 6.2470 2.2136 14 6 4.9230 7.5279 2.6906 15 1 3.8495 7.6421 2.6616 16 6 5.7128 8.5537 3.1650 17 7 7.0200 8.4145 3.2008 18 14 4.9260 10.1411 3.7568 19 1 4.6260 10.0342 5.2072 20 1 5.8601 11.2724 3.5267 21 1 3.6664 10.3789 3.0070 22 6 3.9750 -0.4478 -0.0064 23 6 5.3860 -0.9771 -0.0134 24 16 2.5209 -1.4372 -0.0008 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.8669 2.0894 0.0009 29 1 4.2352 2.5428 -2.0272 30 1 5.8412 3.0362 -1.4388 31 1 5.5359 1.3375 -1.8733 32 1 3.5148 3.6549 -0.0933 33 1 5.8075 4.3259 0.3541 34 1 5.6600 3.4964 1.9219 35 1 2.8161 4.1942 2.5980 36 1 3.1309 5.7718 3.3601 37 1 4.2084 4.3939 3.6889 38 1 6.1174 5.7924 3.0311 39 1 6.2337 6.4626 1.3862 40 1 7.5757 9.1362 3.5341 41 1 5.7300 -1.1083 1.0125 42 1 5.4116 -1.9362 -0.5307 43 1 6.0368 -0.2697 -0.5272 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602512783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:52 Heat of formation + Delta-G solvation = -0.709550 kcal Electronic energy + Delta-G solvation = -19715.081119 eV Core-core repulsion = 16885.561923 eV Total energy + Delta-G solvation = -2829.519196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.18654 -36.64755 -34.46640 -33.06839 -31.99414 -29.52370 -29.17781 -26.70887 -25.40774 -24.82931 -23.33457 -22.07304 -21.11311 -19.14307 -17.97604 -17.01752 -16.33511 -15.47853 -14.75245 -14.71326 -14.39210 -14.26854 -13.84256 -13.47425 -13.41983 -13.15602 -12.95080 -12.76004 -12.55739 -12.23675 -12.10711 -11.98892 -11.62636 -11.44537 -11.30230 -11.25930 -11.05978 -10.82668 -10.75132 -10.62529 -10.26857 -10.20965 -9.67875 -9.12642 -8.93838 -8.40146 -8.31441 -8.28983 -8.04930 -5.96230 -3.97181 0.99751 1.59927 1.97028 2.76832 3.34034 3.40259 3.43501 4.42504 4.53074 4.74996 4.83035 5.03664 5.16377 5.22280 5.24619 5.30980 5.37925 5.39662 5.42220 5.64352 5.66516 5.68383 5.79318 5.84969 5.88320 5.94366 6.08978 6.18823 6.26177 6.41181 6.48383 6.55881 6.62232 6.71953 7.05113 7.21246 7.22953 7.40917 7.66621 7.72026 7.87645 8.04250 8.48424 9.09274 9.66131 11.15345 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028601 B = 0.003187 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.737276 B = 8783.914459 C = 9377.919083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.189 4.189 3 C -0.106 4.106 4 C -0.077 4.077 5 C 0.141 3.859 6 H 0.084 0.916 7 C -0.176 4.176 8 N -0.678 5.678 9 C 0.065 3.935 10 C -0.082 4.082 11 H 0.053 0.947 12 C -0.122 4.122 13 C 0.027 3.973 14 C -0.512 4.512 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.186 4.186 23 C -0.082 4.082 24 S 0.068 5.932 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.142 0.858 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.338 0.662 33 H 0.025 0.975 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.039 0.961 38 H 0.016 0.984 39 H 0.012 0.988 40 H 0.259 0.741 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.963 -19.896 -9.102 23.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.305 4.305 3 C -0.136 4.136 4 C -0.089 4.089 5 C 0.028 3.972 6 H 0.102 0.898 7 C -0.236 4.236 8 N -0.308 5.308 9 C -0.064 4.064 10 C -0.101 4.101 11 H 0.071 0.929 12 C -0.179 4.179 13 C -0.010 4.010 14 C -0.550 4.550 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.303 4.303 23 C -0.140 4.140 24 S 0.332 5.668 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.160 0.840 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.156 0.844 33 H 0.044 0.956 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.034 0.966 39 H 0.030 0.970 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.242 -21.673 -8.436 24.674 hybrid contribution 0.383 2.791 -0.407 2.846 sum -7.859 -18.882 -8.843 22.282 Atomic orbital electron populations 1.20289 0.88108 1.03009 1.02374 1.24315 0.99607 0.95363 1.11236 1.19889 0.92252 0.99296 1.02138 1.18751 0.94771 0.93169 1.02206 1.20125 0.94037 0.89275 0.93791 0.89751 1.22466 1.01789 1.01991 0.97306 1.60591 1.24160 1.07466 1.38625 1.22178 0.92502 0.94003 0.97687 1.21191 0.98394 0.93541 0.96942 0.92880 1.21581 0.98793 1.00013 0.97560 1.19119 0.92867 0.92906 0.96111 1.21242 0.93149 0.99314 1.41319 0.92586 1.25019 0.94817 0.98642 0.96092 1.69965 1.03580 1.32917 1.47256 0.86634 0.79143 0.83338 0.79136 1.20721 1.21339 1.19915 1.24089 0.98641 0.95753 1.11843 1.20324 0.90083 1.00934 1.02674 1.84015 0.97018 1.10220 1.75524 0.91121 0.91687 0.90471 0.84016 0.92360 0.91989 0.92261 0.84438 0.95646 0.91593 0.93933 0.92872 0.94228 0.96594 0.96960 0.93124 0.90854 0.91643 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.38 36.00 0.37 -0.30 16 2 C -0.19 -2.11 6.51 -36.01 -0.23 -2.34 16 3 C -0.11 -1.30 9.34 -41.21 -0.38 -1.69 16 4 C -0.08 -0.95 4.96 -106.24 -0.53 -1.48 16 5 C 0.14 1.75 2.26 -68.87 -0.16 1.60 16 6 H 0.08 1.09 7.18 -51.93 -0.37 0.72 16 7 C -0.18 -1.95 9.09 37.16 0.34 -1.61 16 8 N -0.68 -9.67 4.88 -107.95 -0.53 -10.19 16 9 C 0.06 1.10 4.87 -3.82 -0.02 1.08 16 10 C -0.08 -1.66 2.48 -90.62 -0.22 -1.88 16 11 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 12 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 13 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 14 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 15 H 0.06 1.54 7.05 -52.49 -0.37 1.17 16 16 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 18 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.19 -2.13 6.50 -36.00 -0.23 -2.36 16 23 C -0.08 -0.74 9.79 36.01 0.35 -0.39 16 24 S 0.07 0.73 23.31 -107.50 -2.51 -1.78 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.14 1.71 7.42 -52.49 -0.39 1.32 16 29 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 31 H 0.06 0.59 7.26 -51.93 -0.38 0.21 16 32 H 0.34 4.57 8.18 -39.29 -0.32 4.25 16 33 H 0.03 0.43 7.44 -51.93 -0.39 0.05 16 34 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 35 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 36 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.65 6.49 -51.93 -0.34 0.32 16 LS Contribution 356.66 15.07 5.37 5.37 Total: -1.00 -29.98 356.66 -10.32 -40.30 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -7.49 Total: -0.07 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -0.90 Total: -24.05 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.21 Total: -36.54 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.51 Total: -1.78 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.98 -10.32 -40.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602512783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.590 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds