Wall clock time and date at job start Tue Mar 31 2020 05:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33385 * 125.20584 * 2 1 4 4 C 1.38416 * 114.92370 * 180.20800 * 3 2 1 5 5 C 1.50707 * 122.54071 * 179.76238 * 4 3 2 6 6 H 1.09002 * 109.46711 * 219.71444 * 5 4 3 7 7 C 1.52994 * 109.46892 * 99.71625 * 5 4 3 8 8 N 1.46891 * 109.46807 * 339.71241 * 5 4 3 9 9 C 1.46900 * 110.99776 * 204.99733 * 8 5 4 10 10 C 1.53006 * 109.47303 * 180.02562 * 9 8 5 11 11 H 1.08998 * 109.46505 * 304.99837 * 10 9 8 12 12 C 1.52997 * 109.47127 * 64.99966 * 10 9 8 13 13 C 1.52992 * 109.47223 * 185.00471 * 10 9 8 14 14 C 1.50697 * 109.47463 * 174.99857 * 13 10 9 15 15 H 1.08007 * 119.99713 * 0.02562 * 14 13 10 16 16 C 1.37879 * 120.00558 * 179.97438 * 14 13 10 17 17 N 1.31509 * 119.99821 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00224 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47114 * 89.99881 * 18 16 14 20 20 H 1.48492 * 109.47167 * 209.99907 * 18 16 14 21 21 H 1.48502 * 109.46795 * 330.00324 * 18 16 14 22 22 C 1.33393 * 114.92164 * 359.49808 * 4 3 2 23 23 C 1.50696 * 125.20498 * 180.29149 * 22 4 3 24 24 S 1.75887 * 125.19971 * 179.69181 * 2 1 3 25 25 H 1.09002 * 109.46907 * 180.33346 * 1 2 3 26 26 H 1.08997 * 109.46655 * 300.33124 * 1 2 3 27 27 H 1.09001 * 109.46982 * 60.33405 * 1 2 3 28 28 H 1.08009 * 122.53331 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.47294 * 299.99461 * 7 5 4 30 30 H 1.09000 * 109.47864 * 60.00010 * 7 5 4 31 31 H 1.08998 * 109.47093 * 179.97438 * 7 5 4 32 32 H 1.00905 * 110.99802 * 81.04979 * 8 5 4 33 33 H 1.09007 * 109.47006 * 60.00373 * 9 8 5 34 34 H 1.08996 * 109.47541 * 300.00579 * 9 8 5 35 35 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.46832 * 60.00321 * 12 10 9 37 37 H 1.09004 * 109.47261 * 300.00303 * 12 10 9 38 38 H 1.09002 * 109.46906 * 294.99936 * 13 10 9 39 39 H 1.09006 * 109.47717 * 54.99311 * 13 10 9 40 40 H 0.97002 * 120.00259 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.47098 * 89.99933 * 23 22 4 42 42 H 1.09003 * 109.46693 * 209.99845 * 23 22 4 43 43 H 1.09000 * 109.47216 * 329.99271 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6379 0.8428 -0.0046 5 6 4.6623 1.9482 -0.0106 6 1 5.4867 1.6760 -0.6697 7 6 5.1928 2.1595 1.4088 8 7 4.0405 3.1893 -0.4909 9 6 5.0452 4.0921 -1.0685 10 6 4.3614 5.3711 -1.5560 11 1 3.5598 5.1132 -2.2481 12 6 3.7791 6.1260 -0.3595 13 6 5.3852 6.2568 -2.2688 14 6 4.6887 7.4574 -2.8556 15 1 3.6224 7.5770 -2.7321 16 6 5.4127 8.4039 -3.5493 17 7 6.7111 8.2585 -3.6993 18 14 4.5491 9.8917 -4.2772 19 1 4.5356 10.9928 -3.2809 20 1 5.2714 10.3360 -5.4962 21 1 3.1537 9.5291 -4.6330 22 6 3.9751 -0.4478 0.0023 23 6 5.3861 -0.9771 0.0057 24 16 2.5209 -1.4372 0.0077 25 1 -0.3633 -1.0277 0.0060 26 1 -0.3632 0.5190 0.8870 27 1 -0.3633 0.5086 -0.8930 28 1 1.8669 2.0895 -0.0004 29 1 4.3684 2.4318 2.0680 30 1 5.6541 1.2386 1.7653 31 1 5.9340 2.9587 1.4045 32 1 3.5265 3.6456 0.2478 33 1 5.5364 3.5997 -1.9078 34 1 5.7867 4.3434 -0.3101 35 1 3.2916 7.0369 -0.7069 36 1 4.5808 6.3838 0.3325 37 1 3.0497 5.4949 0.1483 38 1 6.1394 6.5873 -1.5547 39 1 5.8643 5.6889 -3.0664 40 1 7.2204 8.9242 -4.1876 41 1 5.7258 -1.0993 1.0341 42 1 5.4137 -1.9407 -0.5031 43 1 6.0390 -0.2742 -0.5117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602512795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:55 Heat of formation + Delta-G solvation = -0.105455 kcal Electronic energy + Delta-G solvation = -19710.673969 eV Core-core repulsion = 16881.180968 eV Total energy + Delta-G solvation = -2829.493001 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.19187 -36.71929 -34.45212 -33.06416 -31.98521 -29.50944 -29.16951 -26.78751 -25.45047 -24.89814 -23.41147 -22.02860 -21.05117 -19.03038 -18.00634 -17.00375 -16.45014 -15.55426 -14.80935 -14.67301 -14.39460 -14.29025 -13.75086 -13.47217 -13.37838 -13.19377 -12.94310 -12.85558 -12.52184 -12.35681 -12.07574 -11.87656 -11.76471 -11.49099 -11.37528 -11.31538 -11.06144 -10.84714 -10.75968 -10.61621 -10.30407 -10.17008 -9.70532 -9.13628 -8.94842 -8.38436 -8.31535 -8.30056 -8.06642 -5.96209 -3.97199 1.00856 1.61195 1.97166 2.78123 3.33928 3.40355 3.43898 4.42077 4.52818 4.75607 4.82477 5.07774 5.15846 5.20117 5.25046 5.31583 5.39679 5.40103 5.41358 5.62161 5.68728 5.72405 5.80702 5.82453 5.88905 5.92434 6.04358 6.10089 6.24328 6.31718 6.43538 6.50620 6.57845 6.59926 6.98644 7.12201 7.19420 7.41424 7.67249 7.72010 7.88057 8.04228 8.48201 9.09179 9.66132 11.15341 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026343 B = 0.003198 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.630746 B = 8752.801293 C = 9268.064714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.188 4.188 3 C -0.107 4.107 4 C -0.077 4.077 5 C 0.140 3.860 6 H 0.085 0.915 7 C -0.175 4.175 8 N -0.682 5.682 9 C 0.065 3.935 10 C -0.084 4.084 11 H 0.065 0.935 12 C -0.133 4.133 13 C 0.028 3.972 14 C -0.512 4.512 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.187 4.187 23 C -0.080 4.080 24 S 0.068 5.932 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.144 0.856 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.339 0.661 33 H 0.066 0.934 34 H 0.025 0.975 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.031 0.969 38 H 0.014 0.986 39 H 0.015 0.985 40 H 0.259 0.741 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.010 -19.179 10.785 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.305 4.305 3 C -0.137 4.137 4 C -0.089 4.089 5 C 0.027 3.973 6 H 0.103 0.897 7 C -0.235 4.235 8 N -0.313 5.313 9 C -0.063 4.063 10 C -0.103 4.103 11 H 0.083 0.917 12 C -0.191 4.191 13 C -0.009 4.009 14 C -0.551 4.551 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.305 4.305 23 C -0.139 4.139 24 S 0.332 5.668 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.161 0.839 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.158 0.842 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.032 0.968 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.340 -20.934 10.096 24.373 hybrid contribution 0.375 2.690 0.309 2.733 sum -6.966 -18.245 10.405 22.128 Atomic orbital electron populations 1.20283 0.88108 1.02368 1.02952 1.24331 0.99599 0.95335 1.11196 1.19887 0.92242 0.99418 1.02163 1.18756 0.94797 0.93147 1.02231 1.20131 0.93488 0.88947 0.94691 0.89673 1.22451 1.01484 1.02127 0.97398 1.60632 1.27493 1.05853 1.37303 1.22166 0.92777 0.93541 0.97852 1.21215 0.99479 0.92753 0.96827 0.91663 1.21738 0.99343 1.00320 0.97672 1.19103 0.93410 0.93559 0.94857 1.21242 0.94323 1.06036 1.33460 0.92585 1.25019 0.94828 0.98254 0.96455 1.69963 1.06006 1.35500 1.42227 0.86635 0.79729 0.83211 0.78683 1.20779 1.21313 1.19876 1.24073 0.98638 0.95751 1.11996 1.20312 0.90118 1.01091 1.02339 1.84018 0.97011 1.10273 1.75470 0.91892 0.90814 0.90575 0.83868 0.92444 0.92204 0.92063 0.84193 0.91517 0.95701 0.91912 0.94044 0.95022 0.96793 0.96687 0.93118 0.91065 0.91641 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.38 36.01 0.37 -0.31 16 2 C -0.19 -2.14 6.51 -36.00 -0.23 -2.37 16 3 C -0.11 -1.35 9.33 -41.21 -0.38 -1.73 16 4 C -0.08 -0.97 4.98 -106.25 -0.53 -1.50 16 5 C 0.14 1.78 2.46 -68.87 -0.17 1.61 16 6 H 0.09 1.11 6.66 -51.93 -0.35 0.77 16 7 C -0.18 -1.95 9.14 37.15 0.34 -1.61 16 8 N -0.68 -9.90 5.29 -107.95 -0.57 -10.47 16 9 C 0.07 1.11 4.94 -3.82 -0.02 1.10 16 10 C -0.08 -1.70 2.54 -90.62 -0.23 -1.93 16 11 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 12 C -0.13 -2.46 8.77 37.16 0.33 -2.13 16 13 C 0.03 0.72 4.45 -27.89 -0.12 0.60 16 14 C -0.51 -14.36 8.41 -34.44 -0.29 -14.65 16 15 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 18 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.19 -2.16 6.51 -36.00 -0.23 -2.39 16 23 C -0.08 -0.73 9.79 36.00 0.35 -0.38 16 24 S 0.07 0.74 23.31 -107.50 -2.51 -1.77 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.14 1.80 7.38 -52.48 -0.39 1.41 16 29 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.06 0.59 7.89 -51.93 -0.41 0.18 16 31 H 0.06 0.70 7.45 -51.93 -0.39 0.32 16 32 H 0.34 4.66 6.51 -39.29 -0.26 4.41 16 33 H 0.07 1.19 8.06 -51.93 -0.42 0.78 16 34 H 0.02 0.42 7.44 -51.93 -0.39 0.03 16 35 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.70 6.85 -51.93 -0.36 0.34 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -29.93 355.05 -10.32 -40.24 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.39 Total: 0.45 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -0.92 Total: -24.22 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.17 Total: -36.79 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.51 Total: -1.77 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.93 -10.32 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602512795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.137 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds