Wall clock time and date at job start Tue Mar 31 2020 05:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33390 * 125.20237 * 2 1 4 4 C 1.38423 * 114.91979 * 180.02562 * 3 2 1 5 5 C 1.50705 * 122.53975 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46913 * 220.02377 * 5 4 3 7 7 C 1.53000 * 109.47278 * 100.01789 * 5 4 3 8 8 N 1.46903 * 109.46578 * 340.01687 * 5 4 3 9 9 C 1.46902 * 110.99636 * 204.99820 * 8 5 4 10 10 C 1.53002 * 109.46996 * 180.02562 * 9 8 5 11 11 H 1.08999 * 109.46785 * 55.00200 * 10 9 8 12 12 C 1.52999 * 109.47407 * 295.00204 * 10 9 8 13 13 C 1.52996 * 109.46959 * 175.00256 * 10 9 8 14 14 C 1.50703 * 109.47018 * 185.00266 * 13 10 9 15 15 H 1.07993 * 119.99875 * 359.97438 * 14 13 10 16 16 C 1.37879 * 119.99925 * 179.97438 * 14 13 10 17 17 N 1.31515 * 120.00227 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99935 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47280 * 59.99997 * 18 16 14 20 20 H 1.48503 * 109.47546 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47363 * 300.00162 * 18 16 14 22 22 C 1.33391 * 114.92045 * 359.97438 * 4 3 2 23 23 C 1.50706 * 125.19937 * 179.97438 * 22 4 3 24 24 S 1.75878 * 109.59311 * 0.24637 * 22 4 3 25 25 H 1.09006 * 109.46963 * 90.00826 * 1 2 3 26 26 H 1.08999 * 109.47280 * 210.00126 * 1 2 3 27 27 H 1.08997 * 109.47718 * 330.00838 * 1 2 3 28 28 H 1.08001 * 122.54061 * 0.02562 * 3 2 1 29 29 H 1.08994 * 109.47075 * 300.00568 * 7 5 4 30 30 H 1.09004 * 109.46585 * 60.00132 * 7 5 4 31 31 H 1.08997 * 109.46716 * 179.97438 * 7 5 4 32 32 H 1.00892 * 111.00669 * 328.95399 * 8 5 4 33 33 H 1.08998 * 109.47451 * 300.00706 * 9 8 5 34 34 H 1.09001 * 109.46744 * 60.00355 * 9 8 5 35 35 H 1.09000 * 109.46678 * 300.00604 * 12 10 9 36 36 H 1.09009 * 109.46750 * 59.99848 * 12 10 9 37 37 H 1.08996 * 109.47235 * 180.02562 * 12 10 9 38 38 H 1.09009 * 109.47317 * 304.99917 * 13 10 9 39 39 H 1.08999 * 109.47202 * 65.00205 * 13 10 9 40 40 H 0.96995 * 120.00061 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.47015 * 90.00344 * 23 22 4 42 42 H 1.09000 * 109.46646 * 209.99497 * 23 22 4 43 43 H 1.09000 * 109.47248 * 330.00214 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 -0.0006 5 6 4.6623 1.9482 -0.0012 6 1 5.4862 1.6797 -0.6624 7 6 5.1937 2.1520 1.4190 8 7 4.0401 3.1920 -0.4745 9 6 5.0444 4.0979 -1.0478 10 6 4.3603 5.3794 -1.5280 11 1 3.7963 5.8201 -0.7059 12 6 3.4088 5.0489 -2.6797 13 6 5.4192 6.3728 -2.0104 14 6 4.7571 7.6786 -2.3678 15 1 3.6880 7.7887 -2.2620 16 6 5.5163 8.7327 -2.8300 17 7 6.8183 8.5987 -2.9585 18 14 4.6956 10.3509 -3.2738 19 1 4.0078 10.9013 -2.0783 20 1 5.7234 11.3153 -3.7419 21 1 3.7031 10.1227 -4.3545 22 6 3.9750 -0.4478 -0.0005 23 6 5.3861 -0.9770 -0.0016 24 16 2.5209 -1.4371 -0.0068 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.8669 2.0895 0.0004 29 1 4.3698 2.4205 2.0801 30 1 5.6553 1.2291 1.7701 31 1 5.9349 2.9512 1.4183 32 1 3.3059 2.9990 -1.1391 33 1 5.7864 4.3451 -0.2886 34 1 5.5351 3.6100 -1.8901 35 1 3.9728 4.6081 -3.5017 36 1 2.6544 4.3411 -2.3360 37 1 2.9218 5.9620 -3.0221 38 1 6.1483 6.5403 -1.2176 39 1 5.9233 5.9688 -2.8883 40 1 7.3523 9.3401 -3.2840 41 1 5.7271 -1.1044 1.0258 42 1 5.4131 -1.9381 -0.5151 43 1 6.0384 -0.2715 -0.5161 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602512798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:57 Heat of formation + Delta-G solvation = 0.525388 kcal Electronic energy + Delta-G solvation = -19731.090730 eV Core-core repulsion = 16901.625085 eV Total energy + Delta-G solvation = -2829.465645 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.30829 -36.63268 -34.41197 -33.10307 -31.96636 -29.56570 -29.29861 -26.75750 -25.67668 -24.87043 -23.35740 -21.92279 -20.94708 -19.01643 -18.06242 -17.11411 -16.45195 -15.69185 -15.13893 -14.62408 -14.41970 -14.13006 -13.73733 -13.50645 -13.28144 -13.19046 -13.09171 -12.78174 -12.45683 -12.29673 -12.03099 -11.90651 -11.82451 -11.47231 -11.41104 -11.35389 -11.06472 -10.86196 -10.75304 -10.49859 -10.31522 -10.15748 -9.68919 -9.12740 -8.95188 -8.50104 -8.37910 -8.30658 -8.11293 -5.95590 -3.96693 0.89735 1.50529 1.87651 2.64412 3.35857 3.40137 3.42702 4.40730 4.52104 4.67044 4.72495 5.02354 5.13003 5.20585 5.29206 5.33313 5.37713 5.40106 5.49030 5.62699 5.67101 5.77001 5.81368 5.82864 5.89096 6.00518 6.07607 6.15053 6.26255 6.31469 6.36901 6.47752 6.52691 6.60311 6.99206 7.13085 7.20101 7.42740 7.68993 7.72511 7.88796 8.04814 8.48714 9.09506 9.66525 11.15946 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028759 B = 0.003192 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.373722 B = 8768.769309 C = 9400.451240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.183 4.183 3 C -0.120 4.120 4 C -0.097 4.097 5 C 0.142 3.858 6 H 0.050 0.950 7 C -0.132 4.132 8 N -0.684 5.684 9 C 0.064 3.936 10 C -0.084 4.084 11 H 0.065 0.935 12 C -0.134 4.134 13 C 0.029 3.971 14 C -0.513 4.513 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.180 4.180 23 C -0.082 4.082 24 S 0.075 5.925 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.148 0.852 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.340 0.660 33 H 0.068 0.932 34 H 0.023 0.977 35 H 0.040 0.960 36 H 0.031 0.969 37 H 0.062 0.938 38 H 0.015 0.985 39 H 0.014 0.986 40 H 0.260 0.740 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.755 -21.200 6.857 23.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.300 4.300 3 C -0.150 4.150 4 C -0.109 4.109 5 C 0.030 3.970 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.317 5.317 9 C -0.064 4.064 10 C -0.102 4.102 11 H 0.084 0.916 12 C -0.191 4.191 13 C -0.009 4.009 14 C -0.551 4.551 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.298 4.298 23 C -0.140 4.140 24 S 0.340 5.660 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.166 0.834 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.160 0.840 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.033 0.967 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.881 -22.383 7.407 24.859 hybrid contribution 0.119 2.001 -1.145 2.309 sum -7.762 -20.383 6.261 22.692 Atomic orbital electron populations 1.20315 0.87912 1.03013 1.02678 1.24359 0.99743 0.95337 1.10531 1.19996 0.92207 0.99715 1.03095 1.18927 0.94851 0.93661 1.03505 1.20147 0.92885 0.86773 0.97173 0.93218 1.21736 1.01079 1.00933 0.95289 1.60716 1.13837 1.12972 1.44185 1.22193 0.93813 0.93604 0.96839 1.21214 0.97989 0.93884 0.97156 0.91627 1.21740 0.98436 1.00700 0.98233 1.19101 0.93113 0.92610 0.96070 1.21207 0.93812 0.97077 1.43051 0.92625 1.25017 0.94815 0.98755 0.95941 1.69954 1.04784 1.31992 1.46985 0.86693 0.79045 0.83635 0.78831 1.20265 1.21394 1.20323 1.24143 0.98832 0.95743 1.11052 1.20343 0.89968 1.01074 1.02636 1.84055 0.96822 1.10060 1.75075 0.90842 0.91606 0.90402 0.83443 0.91987 0.92990 0.92111 0.83992 0.91376 0.95872 0.94071 0.95042 0.91877 0.96674 0.96802 0.93057 0.90758 0.91577 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.38 36.00 0.37 -0.28 16 2 C -0.18 -1.97 6.51 -36.00 -0.23 -2.20 16 3 C -0.12 -1.45 8.88 -41.21 -0.37 -1.82 16 4 C -0.10 -1.20 4.87 -106.25 -0.52 -1.72 16 5 C 0.14 1.86 2.49 -68.86 -0.17 1.69 16 6 H 0.05 0.66 6.66 -51.93 -0.35 0.32 16 7 C -0.13 -1.63 9.40 37.16 0.35 -1.28 16 8 N -0.68 -10.21 5.79 -107.94 -0.63 -10.83 16 9 C 0.06 1.12 4.94 -3.82 -0.02 1.10 16 10 C -0.08 -1.71 2.54 -90.62 -0.23 -1.94 16 11 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 12 C -0.13 -2.52 8.77 37.16 0.33 -2.20 16 13 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 14 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 15 H 0.06 1.52 7.05 -52.49 -0.37 1.15 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 18 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.18 -2.02 6.51 -36.00 -0.23 -2.25 16 23 C -0.08 -0.73 9.79 36.01 0.35 -0.37 16 24 S 0.08 0.78 23.31 -107.50 -2.51 -1.73 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.15 1.79 7.15 -52.49 -0.38 1.41 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.55 7.89 -51.93 -0.41 0.14 16 31 H 0.06 0.78 7.45 -51.93 -0.39 0.39 16 32 H 0.34 4.95 5.40 -39.30 -0.21 4.74 16 33 H 0.07 1.22 7.44 -51.93 -0.39 0.84 16 34 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.03 0.50 6.68 -51.92 -0.35 0.15 16 37 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 38 H 0.01 0.41 8.14 -51.92 -0.42 -0.01 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.70 6.85 -51.93 -0.36 0.34 16 LS Contribution 353.96 15.07 5.33 5.33 Total: -1.00 -29.85 353.96 -10.30 -40.15 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.33 Total: 0.57 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: -0.88 Total: -23.88 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.11 Total: -37.22 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.85 -10.30 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602512798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.674 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds