Wall clock time and date at job start Tue Mar 31 2020 05:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33386 * 125.20183 * 2 1 4 4 C 1.38427 * 114.92188 * 180.02562 * 3 2 1 5 5 C 1.50695 * 122.54436 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.47229 * 145.02476 * 5 4 3 7 7 C 1.52993 * 109.47261 * 265.02913 * 5 4 3 8 8 N 1.46904 * 109.46760 * 25.03004 * 5 4 3 9 9 C 1.46899 * 111.00029 * 155.00092 * 8 5 4 10 10 C 1.52997 * 109.47254 * 179.97438 * 9 8 5 11 11 H 1.09008 * 109.47017 * 54.99767 * 10 9 8 12 12 C 1.53001 * 109.47242 * 295.00236 * 10 9 8 13 13 C 1.52994 * 109.47404 * 174.99689 * 10 9 8 14 14 C 1.50701 * 109.47248 * 184.99754 * 13 10 9 15 15 H 1.07997 * 120.00120 * 0.02562 * 14 13 10 16 16 C 1.37881 * 119.99825 * 179.97438 * 14 13 10 17 17 N 1.31511 * 119.99974 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00091 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47323 * 89.99961 * 18 16 14 20 20 H 1.48504 * 109.46935 * 209.99740 * 18 16 14 21 21 H 1.48493 * 109.47102 * 329.99583 * 18 16 14 22 22 C 1.33396 * 114.91913 * 0.25323 * 4 3 2 23 23 C 1.50694 * 125.20460 * 179.75706 * 22 4 3 24 24 S 1.75883 * 125.20372 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.47362 * 89.99448 * 1 2 3 26 26 H 1.08995 * 109.47325 * 209.99537 * 1 2 3 27 27 H 1.09003 * 109.47037 * 329.99306 * 1 2 3 28 28 H 1.08001 * 122.54354 * 0.06693 * 3 2 1 29 29 H 1.09001 * 109.46997 * 179.97438 * 7 5 4 30 30 H 1.08999 * 109.47404 * 299.99809 * 7 5 4 31 31 H 1.09004 * 109.47538 * 59.99756 * 7 5 4 32 32 H 1.00908 * 110.99583 * 278.95004 * 8 5 4 33 33 H 1.09002 * 109.47043 * 299.99792 * 9 8 5 34 34 H 1.09001 * 109.47354 * 59.99854 * 9 8 5 35 35 H 1.09008 * 109.46731 * 299.99706 * 12 10 9 36 36 H 1.08998 * 109.47430 * 59.99652 * 12 10 9 37 37 H 1.08996 * 109.47271 * 180.02562 * 12 10 9 38 38 H 1.09001 * 109.47698 * 305.00111 * 13 10 9 39 39 H 1.09009 * 109.47010 * 65.00116 * 13 10 9 40 40 H 0.97003 * 120.00629 * 180.02562 * 17 16 14 41 41 H 1.08996 * 109.47427 * 89.99907 * 23 22 4 42 42 H 1.09001 * 109.46956 * 210.00125 * 23 22 4 43 43 H 1.09005 * 109.46659 * 329.99567 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 4.6623 1.9482 -0.0012 6 1 5.5271 1.6424 0.5875 7 6 5.1000 2.2370 -1.4385 8 7 4.0749 3.1604 0.5848 9 6 5.1163 4.0326 1.1441 10 6 4.4676 5.2820 1.7433 11 1 3.7119 4.9856 2.4708 12 6 3.8101 6.0994 0.6294 13 6 5.5367 6.1299 2.4351 14 6 4.8815 7.2958 3.1297 15 1 3.8096 7.4194 3.0827 16 6 5.6503 8.2042 3.8260 17 7 5.0785 9.2213 4.4325 18 14 7.5042 7.9900 3.9078 19 1 8.1358 8.7040 2.7691 20 1 8.0113 8.5506 5.1861 21 1 7.8394 6.5453 3.8334 22 6 3.9751 -0.4477 -0.0064 23 6 5.3860 -0.9771 -0.0134 24 16 2.5209 -1.4372 -0.0006 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8899 0.5140 28 1 1.8669 2.0895 0.0011 29 1 5.8406 3.0368 -1.4389 30 1 5.5358 1.3375 -1.8733 31 1 4.2352 2.5428 -2.0272 32 1 3.5148 3.6550 -0.0933 33 1 5.6600 3.4965 1.9220 34 1 5.8075 4.3260 0.3540 35 1 4.5658 6.3958 -0.0981 36 1 3.0484 5.4953 0.1366 37 1 3.3484 6.9897 1.0562 38 1 6.0655 5.5208 3.1682 39 1 6.2437 6.5000 1.6925 40 1 5.6194 9.8607 4.9221 41 1 5.7300 -1.1083 1.0125 42 1 5.4116 -1.9361 -0.5308 43 1 6.0368 -0.2696 -0.5273 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602512800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:01 Heat of formation + Delta-G solvation = 3.286020 kcal Electronic energy + Delta-G solvation = -19758.024182 eV Core-core repulsion = 16928.678247 eV Total energy + Delta-G solvation = -2829.345935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.24674 -36.82934 -34.53391 -33.08170 -32.02904 -29.59844 -29.32466 -27.30441 -25.51353 -24.94513 -23.34050 -21.77075 -21.11174 -19.07950 -18.07569 -17.04905 -16.82020 -15.69832 -14.90787 -14.72454 -14.39292 -14.10835 -13.80415 -13.51434 -13.44864 -13.27574 -12.99700 -12.84755 -12.80953 -12.30610 -12.23112 -12.03070 -11.94950 -11.63020 -11.53765 -11.30274 -11.15040 -10.98952 -10.73640 -10.65354 -10.39104 -9.80138 -9.71562 -9.42687 -9.04257 -8.50173 -8.42891 -8.34101 -8.13534 -6.00384 -3.97168 0.96846 1.57216 1.94307 2.73435 3.32223 3.39908 3.43619 4.38341 4.48259 4.72217 4.78462 4.98767 5.13255 5.17224 5.19067 5.26437 5.33240 5.37049 5.38089 5.57762 5.60901 5.63504 5.70421 5.76178 5.83485 5.85173 5.95405 6.02120 6.16896 6.23577 6.36204 6.43701 6.47838 6.54443 6.80260 6.98283 7.07884 7.28010 7.34476 7.50207 7.61844 7.84642 8.59211 9.05465 9.62607 11.13099 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025795 B = 0.003362 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.223763 B = 8325.371544 C = 8813.856648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.187 4.187 3 C -0.107 4.107 4 C -0.077 4.077 5 C 0.140 3.860 6 H 0.085 0.915 7 C -0.176 4.176 8 N -0.680 5.680 9 C 0.063 3.937 10 C -0.075 4.075 11 H 0.071 0.929 12 C -0.135 4.135 13 C -0.008 4.008 14 C -0.512 4.512 15 H 0.074 0.926 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.878 3.122 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.187 4.187 23 C -0.081 4.081 24 S 0.070 5.930 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.142 0.858 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.340 0.660 33 H 0.066 0.934 34 H 0.025 0.975 35 H 0.040 0.960 36 H 0.033 0.967 37 H 0.067 0.933 38 H 0.015 0.985 39 H 0.009 0.991 40 H 0.262 0.738 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 -21.489 -12.730 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.304 4.304 3 C -0.137 4.137 4 C -0.090 4.090 5 C 0.027 3.973 6 H 0.103 0.897 7 C -0.235 4.235 8 N -0.312 5.312 9 C -0.066 4.066 10 C -0.094 4.094 11 H 0.090 0.910 12 C -0.193 4.193 13 C -0.046 4.046 14 C -0.550 4.550 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.706 3.294 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.304 4.304 23 C -0.140 4.140 24 S 0.334 5.666 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.160 0.840 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.160 0.840 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.086 0.914 38 H 0.033 0.967 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.973 -23.202 -12.006 26.425 hybrid contribution 1.671 1.903 -0.640 2.612 sum -2.302 -21.299 -12.646 24.877 Atomic orbital electron populations 1.20300 0.88050 1.03080 1.02406 1.24327 0.99655 0.95343 1.11071 1.19890 0.92239 0.99327 1.02233 1.18728 0.94751 0.93130 1.02354 1.20127 0.94102 0.89253 0.93777 0.89741 1.22466 1.01779 1.01963 0.97337 1.60602 1.24040 1.07426 1.39085 1.22190 0.92626 0.94027 0.97744 1.21025 0.98882 0.92486 0.97014 0.91029 1.21748 0.99159 1.00464 0.97890 1.19598 0.94423 0.95400 0.95184 1.21138 0.95734 1.07198 1.30955 0.90835 1.25030 0.98373 0.95069 0.95133 1.69913 1.35704 1.14113 1.34757 0.86805 0.86451 0.78816 0.77359 1.20455 1.21489 1.19072 1.24089 0.98675 0.95761 1.11851 1.20322 0.90076 1.00935 1.02669 1.84024 0.96945 1.10174 1.75429 0.91087 0.91647 0.90409 0.84018 0.92102 0.92178 0.92319 0.84031 0.91530 0.95717 0.94105 0.94759 0.91362 0.96709 0.97285 0.92847 0.90852 0.91614 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.38 36.01 0.37 -0.30 16 2 C -0.19 -2.08 6.51 -36.00 -0.23 -2.31 16 3 C -0.11 -1.30 9.34 -41.21 -0.38 -1.69 16 4 C -0.08 -0.94 4.96 -106.25 -0.53 -1.47 16 5 C 0.14 1.69 2.26 -68.87 -0.16 1.54 16 6 H 0.08 1.04 7.18 -51.93 -0.37 0.67 16 7 C -0.18 -1.85 9.09 37.15 0.34 -1.51 16 8 N -0.68 -9.46 5.42 -107.96 -0.59 -10.05 16 9 C 0.06 1.01 4.94 -3.83 -0.02 0.99 16 10 C -0.08 -1.47 2.54 -90.62 -0.23 -1.70 16 11 H 0.07 1.50 8.14 -51.92 -0.42 1.08 16 12 C -0.14 -2.45 8.77 37.16 0.33 -2.12 16 13 C -0.01 -0.19 3.52 -27.89 -0.10 -0.29 16 14 C -0.51 -14.48 8.96 -34.44 -0.31 -14.79 16 15 H 0.07 2.23 7.30 -52.49 -0.38 1.85 16 16 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 17 N -0.91 -28.06 13.96 55.43 0.77 -27.29 16 18 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 22 C -0.19 -2.09 6.50 -36.00 -0.23 -2.32 16 23 C -0.08 -0.71 9.79 36.00 0.35 -0.36 16 24 S 0.07 0.74 23.31 -107.50 -2.51 -1.77 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.14 1.70 7.42 -52.49 -0.39 1.31 16 29 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 30 H 0.06 0.56 7.26 -51.93 -0.38 0.19 16 31 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 32 H 0.34 4.49 6.43 -39.29 -0.25 4.23 16 33 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 34 H 0.02 0.38 7.44 -51.93 -0.39 0.00 16 35 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.03 0.52 6.68 -51.93 -0.35 0.17 16 37 H 0.07 1.40 6.95 -51.93 -0.36 1.04 16 38 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 39 H 0.01 0.21 7.57 -51.92 -0.39 -0.18 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.62 6.49 -51.93 -0.34 0.28 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -30.45 350.80 -9.93 -40.37 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.33 Total: 0.78 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -0.90 Total: -24.54 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.19 Total: -37.33 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.51 Total: -1.77 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.45 -9.93 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602512800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.660 kcal (2) G-P(sol) polarization free energy of solvation -30.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds