Wall clock time and date at job start Tue Mar 31 2020 05:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46863 * 2 1 4 4 C 1.52999 * 109.46921 * 119.99679 * 2 1 3 5 5 C 1.50702 * 109.47522 * 295.00468 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52999 * 109.47239 * 239.99874 * 2 1 3 14 14 N 1.46895 * 109.47259 * 65.00243 * 13 2 1 15 15 C 1.46902 * 111.00052 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.46911 * 179.97438 * 15 14 13 17 17 O 1.42901 * 109.47188 * 65.00042 * 16 15 14 18 18 C 1.35904 * 116.99829 * 180.02562 * 17 16 15 19 19 C 1.38774 * 120.04124 * 359.72056 * 18 17 16 20 20 C 1.38133 * 119.98993 * 179.74788 * 19 18 17 21 21 C 1.38252 * 120.08228 * 0.53317 * 20 19 18 22 22 C 1.38473 * 120.08229 * 359.73849 * 21 20 19 23 23 F 1.35098 * 119.99559 * 180.02562 * 22 21 20 24 24 C 1.38385 * 120.00970 * 359.97438 * 22 21 20 25 25 H 1.09007 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47667 * 300.00120 * 1 2 3 27 27 H 1.09008 * 109.47037 * 60.00507 * 1 2 3 28 28 H 1.09000 * 109.47527 * 175.00066 * 4 2 1 29 29 H 1.09001 * 109.47054 * 55.00157 * 4 2 1 30 30 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 31 31 H 1.09004 * 109.46992 * 185.00306 * 13 2 1 32 32 H 1.08999 * 109.47129 * 304.99562 * 13 2 1 33 33 H 1.00894 * 110.99896 * 56.04225 * 14 13 2 34 34 H 1.08999 * 109.46615 * 299.99647 * 15 14 13 35 35 H 1.08994 * 109.47343 * 59.99891 * 15 14 13 36 36 H 1.09005 * 109.46907 * 184.99779 * 16 15 14 37 37 H 1.08999 * 109.47106 * 304.99312 * 16 15 14 38 38 H 1.08000 * 120.00403 * 359.97438 * 19 18 17 39 39 H 1.07998 * 119.95600 * 180.26958 * 20 19 18 40 40 H 1.07997 * 119.95573 * 179.76716 * 21 20 19 41 41 H 1.07997 * 120.04210 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4767 6 1 1.0804 0.9746 2.3756 7 6 1.9930 -0.4017 3.7283 8 7 1.6498 0.2804 4.7991 9 14 2.9635 -1.9882 3.9029 10 1 2.0242 -3.1318 4.0269 11 1 3.8201 -2.1789 2.7051 12 1 3.8174 -1.9153 5.1156 13 6 2.0400 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1249 -0.6273 -3.6672 16 6 1.7015 0.1902 -4.8892 17 8 2.3628 1.4568 -4.8674 18 6 2.0944 2.3106 -5.8902 19 6 1.2168 1.9343 -6.8972 20 6 0.9407 2.8049 -7.9334 21 6 1.5461 4.0472 -7.9748 22 6 2.4266 4.4238 -6.9746 23 9 3.0168 5.6383 -7.0165 24 6 2.7013 3.5567 -5.9316 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 3.1262 -0.7995 1.2057 29 1 1.6053 -1.7197 1.2952 30 1 1.9007 -0.0402 5.6795 31 1 3.1263 -0.7995 -1.2055 32 1 1.6054 -1.7198 -1.2951 33 1 1.9882 0.9872 -2.3966 34 1 3.2117 -0.7051 -3.6404 35 1 1.6905 -1.6250 -3.7296 36 1 1.9746 -0.3466 -5.7978 37 1 0.6225 0.3431 -4.8680 38 1 0.7470 0.9623 -6.8687 39 1 0.2543 2.5132 -8.7145 40 1 1.3317 4.7248 -8.7879 41 1 3.3876 3.8501 -5.1511 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602522731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:36 Heat of formation + Delta-G solvation = -74.477966 kcal Electronic energy + Delta-G solvation = -20873.233025 eV Core-core repulsion = 17474.301815 eV Total energy + Delta-G solvation = -3398.931211 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.21386 -40.41987 -37.88174 -36.79477 -34.22366 -32.15670 -31.27114 -30.20363 -29.08541 -27.26505 -25.10711 -23.50549 -23.13549 -22.02582 -21.48081 -19.11251 -18.92124 -16.94859 -16.73549 -16.55998 -16.47020 -16.32657 -15.83243 -15.23533 -14.84519 -14.60726 -14.13534 -14.02559 -13.78390 -13.39841 -13.03884 -12.63351 -12.49384 -12.31491 -12.06193 -11.94573 -11.65081 -11.60411 -11.27348 -11.15751 -10.95698 -10.72034 -10.44222 -9.78735 -9.72678 -9.40446 -9.23693 -9.04573 -8.63557 -8.50379 -8.26364 -6.00507 -3.97385 0.77502 0.94561 2.75119 3.24091 3.32002 3.39449 3.42809 4.01691 4.20488 4.35781 4.47878 4.60595 4.66364 4.73225 4.94828 4.96604 5.02864 5.05885 5.32959 5.45328 5.55106 5.58894 5.61726 5.73224 5.78722 5.86261 5.95773 6.03040 6.28269 6.36689 6.41719 6.59186 6.83616 7.01512 7.04121 7.14109 7.20824 7.32220 7.46814 7.57020 7.84260 8.59183 9.05470 9.62328 11.12991 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028176 B = 0.002597 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.520598 B =10777.263769 C =11237.754241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 H 0.060 0.940 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.289 1.289 13 C 0.061 3.939 14 N -0.687 5.687 15 C 0.060 3.940 16 C 0.060 3.940 17 O -0.309 6.309 18 C 0.168 3.832 19 C -0.221 4.221 20 C -0.051 4.051 21 C -0.197 4.197 22 C 0.139 3.861 23 F -0.135 7.135 24 C -0.192 4.192 25 H 0.038 0.962 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.262 0.738 31 H 0.025 0.975 32 H 0.066 0.934 33 H 0.347 0.653 34 H 0.038 0.962 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.001 1.957 -27.848 27.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.191 1.191 12 H -0.215 1.215 13 C -0.068 4.068 14 N -0.319 5.319 15 C -0.070 4.070 16 C -0.015 4.015 17 O -0.222 6.222 18 C 0.122 3.878 19 C -0.239 4.239 20 C -0.069 4.069 21 C -0.216 4.216 22 C 0.119 3.881 23 F -0.113 7.113 24 C -0.212 4.212 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.030 0.970 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.165 0.835 34 H 0.056 0.944 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.460 1.727 -27.512 27.569 hybrid contribution 1.445 -0.578 0.204 1.570 sum 0.985 1.149 -27.307 27.349 Atomic orbital electron populations 1.21601 0.95268 1.00584 1.00717 1.21008 0.96354 0.99106 0.92844 0.92149 1.19616 0.95710 0.95874 0.93504 1.21136 1.35256 1.09552 0.89083 0.90812 1.25034 0.95685 0.96960 0.95963 1.69916 1.47257 1.39271 0.98025 0.86798 0.80625 0.84363 0.77588 1.20385 1.19144 1.21503 1.22191 0.97227 0.97697 0.89677 1.60553 1.63747 1.06396 1.01158 1.21994 0.98578 0.97340 0.89063 1.23058 0.97796 0.81700 0.98964 1.86081 1.65782 1.26874 1.43418 1.18610 0.92737 0.89462 0.87037 1.21363 1.03340 1.02370 0.96870 1.20782 0.96962 0.92109 0.97030 1.21037 1.01081 0.99026 1.00477 1.17296 0.94421 0.80867 0.95499 1.91521 1.82251 1.41292 1.96277 1.20307 1.06424 0.93139 1.01311 0.94240 0.92220 0.93733 0.96950 0.97060 0.92839 0.95668 0.91506 0.83512 0.94350 0.89017 0.91537 0.90571 0.84689 0.84721 0.84694 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 2 C -0.07 -1.46 2.48 -90.62 -0.22 -1.68 16 3 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.56 8.96 -34.44 -0.31 -14.87 16 6 H 0.07 2.25 7.30 -52.49 -0.38 1.87 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.14 13.96 55.43 0.77 -27.37 16 9 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.38 6.54 56.52 0.37 -6.02 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 C 0.06 0.97 5.07 -3.83 -0.02 0.95 16 14 N -0.69 -9.27 5.95 -113.78 -0.68 -9.95 16 15 C 0.06 0.62 6.11 -3.82 -0.02 0.60 16 16 C 0.06 0.53 5.08 37.16 0.19 0.72 16 17 O -0.31 -3.37 9.66 -19.44 -0.19 -3.56 16 18 C 0.17 1.72 6.69 -39.22 -0.26 1.45 16 19 C -0.22 -1.81 9.04 -39.42 -0.36 -2.16 16 20 C -0.05 -0.36 10.04 -39.61 -0.40 -0.76 16 21 C -0.20 -1.59 10.02 -39.49 -0.40 -1.99 16 22 C 0.14 1.38 7.30 -39.44 -0.29 1.09 16 23 F -0.13 -1.44 17.27 2.25 0.04 -1.40 16 24 C -0.19 -2.01 9.97 -39.37 -0.39 -2.40 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 27 H 0.04 0.76 7.75 -51.92 -0.40 0.36 16 28 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 29 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.35 4.83 8.29 -39.30 -0.33 4.51 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.44 7.65 -51.93 -0.40 0.04 16 37 H 0.08 0.65 7.67 -51.93 -0.40 0.26 16 38 H 0.14 0.85 6.30 -52.49 -0.33 0.52 16 39 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 41 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 341.69 15.07 5.15 5.15 Total: -1.00 -31.17 341.69 -8.26 -39.43 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.34 Total: 0.10 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -2.34 Total: -19.63 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.10 Total: -37.31 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: -0.19 Total: -3.56 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.17 -8.26 -39.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602522731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.051 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds