Wall clock time and date at job start Tue Mar 31 2020 05:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46845 * 2 1 4 4 C 1.53002 * 109.46833 * 240.00258 * 2 1 3 5 5 C 1.50702 * 109.47291 * 64.99605 * 4 2 1 6 6 H 1.07998 * 120.00048 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99714 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99857 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99643 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46940 * 90.00376 * 9 7 5 11 11 H 1.48499 * 109.47057 * 210.00014 * 9 7 5 12 12 H 1.48500 * 109.47543 * 330.00371 * 9 7 5 13 13 C 1.52993 * 109.46938 * 120.00321 * 2 1 3 14 14 N 1.46907 * 109.46990 * 294.99483 * 13 2 1 15 15 C 1.46902 * 110.99670 * 180.02562 * 14 13 2 16 16 H 1.09000 * 109.46894 * 35.00466 * 15 14 13 17 17 C 1.52997 * 109.47094 * 275.00023 * 15 14 13 18 18 O 1.42901 * 109.47149 * 295.00346 * 17 15 14 19 19 C 1.50706 * 109.46577 * 155.00233 * 15 14 13 20 20 C 1.38265 * 119.98386 * 219.99449 * 19 15 14 21 21 C 1.38224 * 120.04834 * 180.02562 * 20 19 15 22 22 C 1.38219 * 120.02911 * 0.02562 * 21 20 19 23 23 C 1.38443 * 119.97057 * 359.97438 * 22 21 20 24 24 F 1.35102 * 120.02207 * 180.02562 * 23 22 21 25 25 C 1.38179 * 119.98731 * 39.72895 * 19 15 14 26 26 H 1.09002 * 109.47282 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47080 * 299.99692 * 1 2 3 28 28 H 1.09004 * 109.47066 * 60.00146 * 1 2 3 29 29 H 1.08997 * 109.46925 * 185.00294 * 4 2 1 30 30 H 1.09008 * 109.46952 * 304.99833 * 4 2 1 31 31 H 0.97008 * 119.99557 * 179.97438 * 8 7 5 32 32 H 1.09010 * 109.46909 * 175.00296 * 13 2 1 33 33 H 1.08994 * 109.47683 * 55.00068 * 13 2 1 34 34 H 1.00892 * 110.99402 * 56.05419 * 14 13 2 35 35 H 1.09000 * 109.47325 * 55.00345 * 17 15 14 36 36 H 1.08998 * 109.46934 * 175.00384 * 17 15 14 37 37 H 0.96706 * 113.99893 * 180.02562 * 18 17 15 38 38 H 1.07997 * 119.97796 * 359.97438 * 20 19 15 39 39 H 1.08004 * 119.98419 * 180.02562 * 21 20 19 40 40 H 1.07991 * 120.01492 * 180.02562 * 22 21 20 41 41 H 1.07996 * 120.00848 * 359.97438 * 25 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0805 0.9746 -2.3757 7 6 1.9931 -0.4017 -3.7284 8 7 2.6763 -1.5188 -3.8512 9 14 1.4994 0.5634 -5.2496 10 1 2.5650 1.5429 -5.5817 11 1 1.3128 -0.3703 -6.3891 12 1 0.2282 1.2848 -4.9873 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1258 -0.6266 3.6671 16 1 3.0896 -1.0976 3.4737 17 6 1.1140 -1.6918 4.0943 18 8 -0.1154 -1.0617 4.4596 19 6 2.2765 0.3928 4.7668 20 6 3.3559 0.3255 5.6282 21 6 3.4951 1.2595 6.6376 22 6 2.5550 2.2616 6.7872 23 6 1.4739 2.3300 5.9252 24 9 0.5547 3.3094 6.0701 25 6 1.3389 1.3976 4.9102 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.1263 -0.7995 -1.2057 30 1 1.6053 -1.7198 -1.2952 31 1 2.9235 -1.8417 -4.7319 32 1 3.1264 -0.7995 1.2055 33 1 1.6054 -1.7198 1.2951 34 1 0.6529 0.1792 2.4753 35 1 0.9383 -2.3788 3.2664 36 1 1.5068 -2.2444 4.9478 37 1 -0.8046 -1.6784 4.7423 38 1 4.0903 -0.4579 5.5130 39 1 4.3389 1.2061 7.3097 40 1 2.6643 2.9914 7.5757 41 1 0.4985 1.4527 4.2342 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:38 Heat of formation + Delta-G solvation = -87.634438 kcal Electronic energy + Delta-G solvation = -21768.464758 eV Core-core repulsion = 18368.963040 eV Total energy + Delta-G solvation = -3399.501718 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.85100 -39.63965 -37.60075 -36.20117 -34.15453 -32.31597 -30.71600 -30.55339 -28.03046 -26.73573 -25.27459 -23.69922 -22.83799 -22.04533 -20.64004 -19.07936 -17.82136 -17.12144 -16.40157 -16.26573 -16.14751 -15.64016 -15.38972 -15.25125 -14.55400 -14.32606 -13.97897 -13.72437 -13.48681 -12.96473 -12.66935 -12.49388 -12.41596 -12.11251 -11.89837 -11.74447 -11.54342 -11.38168 -10.99901 -10.88312 -10.74081 -10.34059 -10.25944 -10.14148 -9.72104 -9.17687 -8.99376 -8.88818 -8.70889 -8.32454 -8.16998 -5.97433 -3.98300 1.12292 1.24111 3.33917 3.40114 3.43574 3.53128 4.01115 4.21933 4.41717 4.50822 4.60723 4.76162 4.97025 4.97888 5.12074 5.23335 5.35233 5.38540 5.40776 5.46545 5.75421 5.78331 5.85476 6.00136 6.06434 6.13519 6.21258 6.26185 6.45082 6.50540 6.56292 6.87973 6.94934 7.11637 7.17355 7.31001 7.43419 7.64641 7.70039 7.85834 8.02828 8.46999 9.08001 9.65161 11.14102 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.003304 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.350895 B = 8472.393757 C = 8724.265338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.066 0.934 4 C 0.029 3.971 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.063 3.937 14 N -0.680 5.680 15 C 0.124 3.876 16 H 0.100 0.900 17 C 0.048 3.952 18 O -0.565 6.565 19 C -0.030 4.030 20 C -0.130 4.130 21 C -0.097 4.097 22 C -0.162 4.162 23 C 0.089 3.911 24 F -0.144 7.144 25 C -0.106 4.106 26 H 0.040 0.960 27 H 0.032 0.968 28 H 0.062 0.938 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.259 0.741 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.350 0.650 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.378 0.622 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.271 0.504 22.267 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.312 5.312 15 C 0.014 3.986 16 H 0.118 0.882 17 C -0.032 4.032 18 O -0.370 6.370 19 C -0.031 4.031 20 C -0.149 4.149 21 C -0.115 4.115 22 C -0.181 4.181 23 C 0.070 3.930 24 F -0.123 7.123 25 C -0.125 4.125 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.171 0.829 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.225 0.775 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.365 1.389 21.922 21.969 hybrid contribution -1.237 -0.698 -0.709 1.588 sum -1.602 0.691 21.213 21.285 Atomic orbital electron populations 1.21736 0.96624 1.00378 1.00345 1.21220 0.94911 1.00157 0.94011 0.91572 1.19106 0.96101 0.95322 0.90359 1.21244 1.34595 1.08249 0.90983 0.92550 1.25017 0.95343 0.95086 0.99103 1.69968 1.39169 1.21239 1.23361 0.86627 0.78957 0.79813 0.82808 1.20710 1.21347 1.19899 1.22213 1.00251 0.94526 0.89516 1.60626 1.20871 1.49400 1.00301 1.20637 0.97739 0.90954 0.89316 0.88175 1.22885 0.86018 0.95347 0.98901 1.86474 1.23625 1.37972 1.88927 1.19512 0.93409 0.95128 0.95069 1.21062 0.98003 0.99944 0.95895 1.20868 0.98419 0.94190 0.98050 1.21071 0.95026 1.01186 1.00810 1.17766 0.88873 0.88448 0.97890 1.91483 1.64995 1.60414 1.95368 1.20914 1.00719 0.93832 0.97015 0.94109 0.94905 0.91859 0.96672 0.96795 0.93122 0.91365 0.95796 0.82947 0.92859 0.93321 0.77472 0.85676 0.85364 0.85295 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.77 37.16 0.33 -2.18 16 2 C -0.08 -1.71 2.55 -90.62 -0.23 -1.94 16 3 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.34 8.41 -34.44 -0.29 -14.63 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.17 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.06 1.06 4.94 -3.82 -0.02 1.04 16 14 N -0.68 -9.88 5.69 -107.95 -0.61 -10.49 16 15 C 0.12 1.48 2.65 -68.86 -0.18 1.29 16 16 H 0.10 1.11 7.66 -51.93 -0.40 0.71 16 17 C 0.05 0.48 6.71 37.16 0.25 0.73 16 18 O -0.56 -5.71 11.48 -35.23 -0.40 -6.11 16 19 C -0.03 -0.36 4.83 -104.63 -0.51 -0.87 16 20 C -0.13 -1.33 9.67 -39.58 -0.38 -1.72 16 21 C -0.10 -0.92 10.04 -39.59 -0.40 -1.32 16 22 C -0.16 -1.72 10.03 -39.51 -0.40 -2.12 16 23 C 0.09 1.14 7.30 -39.42 -0.29 0.85 16 24 F -0.14 -1.95 17.27 2.25 0.04 -1.91 16 25 C -0.11 -1.39 8.31 -39.51 -0.33 -1.72 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.03 0.53 6.68 -51.93 -0.35 0.18 16 28 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 32 H 0.07 1.16 8.06 -51.92 -0.42 0.74 16 33 H 0.02 0.39 7.36 -51.93 -0.38 0.01 16 34 H 0.35 5.13 5.54 -39.30 -0.22 4.91 16 35 H 0.05 0.55 7.35 -51.93 -0.38 0.17 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.38 2.28 9.12 45.56 0.42 2.69 16 38 H 0.13 1.01 8.04 -52.49 -0.42 0.59 16 39 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 40 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.14 1.90 7.01 -52.49 -0.37 1.53 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -31.29 338.64 -8.17 -39.46 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.34 Total: 3.88 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -2.67 Total: -20.48 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.12 Total: -36.68 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.40 Total: -6.11 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.29 -8.17 -39.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.175 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds