Wall clock time and date at job start Tue Mar 31 2020 05:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50704 * 109.47137 * 295.00578 * 4 2 1 6 6 H 1.07991 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99876 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00180 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47044 * 89.99576 * 9 7 5 11 11 H 1.48491 * 109.47429 * 209.99668 * 9 7 5 12 12 H 1.48497 * 109.46794 * 330.00036 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 N 1.46910 * 109.47127 * 65.00091 * 13 2 1 15 15 C 1.46897 * 111.00178 * 180.02562 * 14 13 2 16 16 H 1.09002 * 109.46986 * 324.99792 * 15 14 13 17 17 C 1.53003 * 109.47175 * 84.99842 * 15 14 13 18 18 O 1.42896 * 109.46955 * 64.99959 * 17 15 14 19 19 C 1.50698 * 109.47168 * 204.99929 * 15 14 13 20 20 C 1.38267 * 119.98522 * 319.72543 * 19 15 14 21 21 C 1.38224 * 120.04808 * 179.72113 * 20 19 15 22 22 C 1.38216 * 120.02639 * 0.55497 * 21 20 19 23 23 C 1.38439 * 119.97467 * 359.72020 * 22 21 20 24 24 F 1.35099 * 120.02333 * 180.02562 * 23 22 21 25 25 C 1.38177 * 119.98590 * 139.99730 * 19 15 14 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 30 30 H 1.08997 * 109.47756 * 174.99755 * 4 2 1 31 31 H 0.96996 * 120.00275 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47729 * 184.99759 * 13 2 1 33 33 H 1.09001 * 109.47563 * 305.00337 * 13 2 1 34 34 H 1.00896 * 110.99608 * 56.04490 * 14 13 2 35 35 H 1.09004 * 109.46865 * 185.00135 * 17 15 14 36 36 H 1.08998 * 109.47178 * 304.99602 * 17 15 14 37 37 H 0.96696 * 113.99586 * 179.97438 * 18 17 15 38 38 H 1.07994 * 119.97277 * 359.97438 * 20 19 15 39 39 H 1.08003 * 119.98430 * 180.27135 * 21 20 19 40 40 H 1.07999 * 120.01268 * 179.69834 * 22 21 20 41 41 H 1.07992 * 120.01519 * 0.02562 * 25 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9923 -0.4021 3.7283 8 7 2.6747 -1.5196 3.8513 9 14 1.4986 0.5629 5.2497 10 1 0.1709 0.0956 5.7231 11 1 2.5076 0.3522 6.3186 12 1 1.4248 2.0082 4.9166 13 6 2.0400 -0.7212 -1.2491 14 7 1.6515 0.0374 -2.4456 15 6 2.1249 -0.6271 -3.6672 16 1 3.0884 -1.0987 -3.4741 17 6 1.1122 -1.6919 -4.0937 18 8 -0.1169 -1.0611 -4.4586 19 6 2.2758 0.3919 -4.7671 20 6 1.3321 1.3912 -4.9176 21 6 1.4723 2.3299 -5.9224 22 6 2.5501 2.2638 -6.7852 23 6 3.4925 1.2603 -6.6391 24 9 4.5466 1.1950 -7.4816 25 6 3.3541 0.3237 -5.6284 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.6054 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2057 31 1 2.9213 -1.8429 4.7319 32 1 3.1263 -0.7994 -1.2055 33 1 1.6054 -1.7198 -1.2951 34 1 1.9882 0.9873 -2.3966 35 1 1.5043 -2.2449 -4.9473 36 1 0.9365 -2.3785 -3.2657 37 1 -0.8065 -1.6774 -4.7409 38 1 0.4871 1.4407 -4.2469 39 1 0.7369 3.1127 -6.0363 40 1 2.6568 2.9945 -7.5733 41 1 4.0885 -0.4597 -5.5137 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:41 Heat of formation + Delta-G solvation = -85.837398 kcal Electronic energy + Delta-G solvation = -21663.198240 eV Core-core repulsion = 18263.774448 eV Total energy + Delta-G solvation = -3399.423793 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -49.00987 -39.67438 -37.36520 -36.10638 -34.17572 -32.32144 -31.05593 -30.27463 -28.09121 -26.71286 -25.21377 -23.54497 -22.85514 -22.20931 -20.45407 -19.18664 -17.56923 -17.35296 -16.37447 -16.21308 -16.18563 -15.73182 -15.54592 -14.80721 -14.47701 -14.39382 -13.92614 -13.70818 -13.56202 -13.10455 -12.88637 -12.53864 -12.33385 -12.09188 -11.82544 -11.53061 -11.48846 -11.33894 -10.86151 -10.83123 -10.76382 -10.28054 -10.24262 -9.96036 -9.68731 -9.18565 -9.09784 -8.94926 -8.72125 -8.32650 -8.15832 -5.97526 -3.98522 1.04133 1.10227 3.33347 3.39656 3.43003 3.47478 3.98011 4.26692 4.34520 4.49143 4.52605 4.71199 4.89767 5.15546 5.21091 5.27559 5.38086 5.39169 5.45277 5.57651 5.67235 5.74021 5.86641 5.95395 6.01187 6.15779 6.26892 6.37117 6.45489 6.56176 6.70886 6.79966 7.01653 7.19451 7.20362 7.32435 7.59675 7.69429 7.69870 7.85216 8.02705 8.46868 9.07911 9.64936 11.14034 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026279 B = 0.003151 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.225478 B = 8883.627374 C = 9086.755221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.081 4.081 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.062 3.938 14 N -0.670 5.670 15 C 0.125 3.875 16 H 0.064 0.936 17 C 0.094 3.906 18 O -0.553 6.553 19 C -0.054 4.054 20 C -0.084 4.084 21 C -0.099 4.099 22 C -0.157 4.157 23 C 0.088 3.912 24 F -0.145 7.145 25 C -0.152 4.152 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.016 0.984 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.025 0.975 33 H 0.066 0.934 34 H 0.341 0.659 35 H 0.040 0.960 36 H 0.052 0.948 37 H 0.371 0.629 38 H 0.144 0.856 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 2.747 -21.654 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.066 4.066 14 N -0.301 5.301 15 C 0.015 3.985 16 H 0.082 0.918 17 C 0.015 3.985 18 O -0.357 6.357 19 C -0.055 4.055 20 C -0.102 4.102 21 C -0.117 4.117 22 C -0.176 4.176 23 C 0.069 3.931 24 F -0.123 7.123 25 C -0.171 4.171 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.160 0.840 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.216 0.784 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.190 2.884 -21.416 21.720 hybrid contribution 0.768 -0.011 0.652 1.008 sum -1.422 2.873 -20.764 21.010 Atomic orbital electron populations 1.21571 0.95578 1.00502 1.00200 1.21184 0.96106 0.98894 0.93836 0.92818 1.19121 0.95864 0.95552 0.90470 1.21238 1.34532 1.08283 0.90976 0.92549 1.25021 0.95329 0.95114 0.99106 1.69964 1.39163 1.21266 1.23354 0.86629 0.78209 0.80452 0.82925 1.20718 1.21342 1.19897 1.22252 0.97065 0.97815 0.89493 1.60600 1.63624 1.05602 1.00294 1.20554 0.95921 0.93042 0.89010 0.91838 1.22090 0.85245 0.93524 0.97593 1.86565 1.23228 1.37114 1.88748 1.19683 0.93563 0.96207 0.96021 1.21226 0.98693 0.92803 0.97481 1.21086 0.96991 0.99020 0.94591 1.21135 0.95470 0.99002 1.01944 1.17606 0.86387 0.97903 0.91183 1.91482 1.55059 1.96167 1.69619 1.21023 0.99986 1.00024 0.96060 0.94301 0.93720 0.92899 0.96611 0.96979 0.93115 0.95691 0.91551 0.84008 0.94160 0.92984 0.78386 0.83785 0.85114 0.85170 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 8.89 37.16 0.33 -1.99 16 2 C -0.08 -1.63 2.48 -90.63 -0.22 -1.85 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.29 8.41 -34.44 -0.29 -14.58 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.06 1.03 4.87 -3.82 -0.02 1.01 16 14 N -0.67 -9.27 5.10 -107.95 -0.55 -9.82 16 15 C 0.12 1.48 2.65 -68.87 -0.18 1.30 16 16 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 17 C 0.09 1.02 6.79 37.16 0.25 1.27 16 18 O -0.55 -6.04 12.01 -35.23 -0.42 -6.46 16 19 C -0.05 -0.62 4.59 -104.63 -0.48 -1.10 16 20 C -0.08 -0.93 8.00 -39.58 -0.32 -1.25 16 21 C -0.10 -0.96 10.04 -39.59 -0.40 -1.36 16 22 C -0.16 -1.57 10.03 -39.52 -0.40 -1.96 16 23 C 0.09 1.00 7.30 -39.42 -0.29 0.71 16 24 F -0.14 -1.72 17.27 2.25 0.04 -1.68 16 25 C -0.15 -1.69 9.65 -39.51 -0.38 -2.07 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 28 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 33 H 0.07 1.11 7.36 -51.93 -0.38 0.73 16 34 H 0.34 4.69 8.00 -39.29 -0.31 4.38 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.59 7.35 -51.93 -0.38 0.21 16 37 H 0.37 2.57 9.12 45.56 0.42 2.98 16 38 H 0.14 1.71 7.46 -52.49 -0.39 1.32 16 39 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.13 1.28 8.04 -52.49 -0.42 0.86 16 LS Contribution 342.07 15.07 5.15 5.15 Total: -1.00 -30.93 342.07 -8.20 -39.13 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.52 Total: 3.06 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -2.61 Total: -19.83 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.19 Total: -36.03 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.42 Total: -6.46 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.93 -8.20 -39.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.712 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds