Wall clock time and date at job start Tue Mar 31 2020 05:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 5 5 C 1.50701 * 109.47248 * 64.99284 * 4 2 1 6 6 H 1.07997 * 120.00120 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99825 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99974 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00091 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47323 * 89.99961 * 9 7 5 11 11 H 1.48504 * 109.46935 * 209.99740 * 9 7 5 12 12 H 1.48493 * 109.47102 * 329.99583 * 9 7 5 13 13 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 14 14 N 1.46899 * 109.47254 * 295.00236 * 13 2 1 15 15 C 1.46904 * 111.00029 * 179.97438 * 14 13 2 16 16 H 1.08998 * 109.46835 * 325.00273 * 15 14 13 17 17 C 1.52997 * 109.46874 * 85.00270 * 15 14 13 18 18 O 1.42899 * 109.47207 * 64.99695 * 17 15 14 19 19 C 1.50699 * 109.46851 * 204.99994 * 15 14 13 20 20 C 1.38259 * 119.99225 * 319.72585 * 19 15 14 21 21 C 1.38223 * 120.05170 * 179.72687 * 20 19 15 22 22 C 1.38220 * 120.02664 * 0.54924 * 21 20 19 23 23 C 1.38437 * 119.97163 * 359.72764 * 22 21 20 24 24 F 1.35102 * 120.02567 * 180.02562 * 23 22 21 25 25 C 1.38179 * 119.98124 * 140.00208 * 19 15 14 26 26 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 27 27 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 28 28 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47698 * 184.99641 * 4 2 1 30 30 H 1.09009 * 109.47010 * 304.99646 * 4 2 1 31 31 H 0.97003 * 120.00629 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47153 * 175.00232 * 13 2 1 33 33 H 1.09001 * 109.46832 * 55.00423 * 13 2 1 34 34 H 1.00908 * 110.99847 * 56.04959 * 14 13 2 35 35 H 1.08998 * 109.47208 * 185.00050 * 17 15 14 36 36 H 1.09007 * 109.47253 * 305.00012 * 17 15 14 37 37 H 0.96707 * 114.00420 * 179.97438 * 18 17 15 38 38 H 1.08008 * 119.97348 * 359.97438 * 20 19 15 39 39 H 1.08007 * 119.98678 * 180.27920 * 21 20 19 40 40 H 1.08001 * 120.01521 * 179.70376 * 22 21 20 41 41 H 1.07997 * 120.01340 * 0.02562 * 25 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 1.6457 0.2777 -4.7993 9 14 2.9638 -1.9882 -3.9027 10 1 2.0248 -3.1326 -4.0200 11 1 3.8128 -1.9178 -5.1191 12 1 3.8254 -2.1753 -2.7079 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0375 2.4456 15 6 2.1248 -0.6270 3.6672 16 1 2.0808 -1.7078 3.5332 17 6 3.5684 -0.2064 3.9498 18 8 3.6089 1.1922 4.2402 19 6 1.2492 -0.2286 4.8273 20 6 0.8142 1.0782 4.9479 21 6 0.0065 1.4438 6.0083 22 6 -0.3580 0.5056 6.9557 23 6 0.0817 -0.8019 6.8391 24 9 -0.2743 -1.7199 7.7641 25 6 0.8862 -1.1683 5.7731 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 3.1264 -0.7993 -1.2056 30 1 1.6055 -1.7198 -1.2951 31 1 1.8930 -0.0451 -5.6800 32 1 3.1264 -0.7993 1.2056 33 1 1.6054 -1.7197 1.2951 34 1 0.6528 0.1793 2.4753 35 1 3.9494 -0.7661 4.8041 36 1 4.1852 -0.4139 3.0753 37 1 4.4953 1.5290 4.4301 38 1 1.1025 1.8131 4.2108 39 1 -0.3364 2.4639 6.0991 40 1 -0.9852 0.7926 7.7868 41 1 1.2302 -2.1879 5.6813 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:45 Heat of formation + Delta-G solvation = -81.878886 kcal Electronic energy + Delta-G solvation = -21714.249397 eV Core-core repulsion = 18314.997259 eV Total energy + Delta-G solvation = -3399.252139 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.04456 -39.72832 -37.46102 -36.25713 -34.22994 -32.32480 -31.13732 -30.35364 -28.29177 -27.16441 -25.50436 -23.50247 -22.87859 -21.93200 -20.48132 -19.09841 -17.67630 -17.44055 -16.77337 -16.29429 -16.24466 -15.77511 -15.73573 -14.97782 -14.36355 -14.17867 -13.93478 -13.85422 -13.70182 -13.09960 -13.05590 -12.71399 -12.40480 -12.30924 -11.93021 -11.80719 -11.64160 -11.51116 -11.06735 -10.90940 -10.74386 -10.41726 -9.99471 -9.82021 -9.73420 -9.47681 -9.15208 -9.05166 -8.76498 -8.51665 -8.26427 -6.01713 -3.98640 1.00282 1.06590 3.30861 3.38527 3.41573 3.43665 3.93096 4.22312 4.28743 4.46685 4.48303 4.66841 4.86109 5.09839 5.17143 5.23745 5.31194 5.32782 5.38873 5.51918 5.60874 5.67066 5.69854 5.91375 5.94257 5.96934 6.11763 6.24050 6.33128 6.41525 6.45342 6.75348 6.77514 6.96012 7.06246 7.19184 7.31415 7.45650 7.55784 7.66058 7.82907 8.57760 9.04227 9.61119 11.11764 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027471 B = 0.003280 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.028872 B = 8534.952274 C = 8630.668588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.074 4.074 3 H 0.073 0.927 4 C -0.008 4.008 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.060 3.940 14 N -0.671 5.671 15 C 0.124 3.876 16 H 0.064 0.936 17 C 0.094 3.906 18 O -0.553 6.553 19 C -0.055 4.055 20 C -0.084 4.084 21 C -0.098 4.098 22 C -0.156 4.156 23 C 0.088 3.912 24 F -0.144 7.144 25 C -0.152 4.152 26 H 0.034 0.966 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.014 0.986 30 H 0.009 0.991 31 H 0.262 0.738 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.344 0.656 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.371 0.629 38 H 0.145 0.855 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.445 -1.194 23.961 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.093 4.093 3 H 0.091 0.909 4 C -0.046 4.046 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.069 4.069 14 N -0.304 5.304 15 C 0.014 3.986 16 H 0.081 0.919 17 C 0.015 3.985 18 O -0.357 6.357 19 C -0.056 4.056 20 C -0.102 4.102 21 C -0.116 4.116 22 C -0.175 4.175 23 C 0.069 3.931 24 F -0.123 7.123 25 C -0.171 4.171 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.164 0.836 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.217 0.783 38 H 0.162 0.838 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.332 -0.873 23.654 23.672 hybrid contribution 0.463 -1.873 0.071 1.931 sum 0.794 -2.746 23.725 23.897 Atomic orbital electron populations 1.21755 0.96218 1.00505 1.00878 1.21012 0.95207 1.00268 0.92804 0.90879 1.19599 0.95876 0.95667 0.93445 1.21136 1.35273 1.09578 0.89077 0.90794 1.25031 0.95670 0.96928 0.95968 1.69912 1.47225 1.39302 0.98005 0.86805 0.80644 0.84346 0.77609 1.20450 1.21488 1.19120 1.22265 1.00307 0.94416 0.89864 1.60628 1.19947 1.49736 1.00107 1.20559 0.93057 0.96413 0.88532 0.91856 1.22092 0.95359 0.82771 0.98286 1.86569 1.33289 1.22971 1.92837 1.19666 0.96834 0.93575 0.95510 1.21237 0.95162 0.96005 0.97834 1.21097 0.97342 0.99354 0.93814 1.21145 1.02942 0.91901 1.01493 1.17604 0.99684 0.86922 0.88860 1.91484 1.90509 1.65864 1.64454 1.21012 1.00492 1.00756 0.94859 0.94682 0.91293 0.94110 0.96737 0.97294 0.92831 0.91495 0.95756 0.83610 0.94105 0.93002 0.78281 0.83755 0.85036 0.85117 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.77 37.16 0.33 -2.14 16 2 C -0.07 -1.42 2.54 -90.62 -0.23 -1.65 16 3 H 0.07 1.51 8.14 -51.92 -0.42 1.08 16 4 C -0.01 -0.19 3.52 -27.89 -0.10 -0.29 16 5 C -0.51 -14.37 8.96 -34.44 -0.31 -14.68 16 6 H 0.07 2.23 7.30 -52.49 -0.38 1.84 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -27.90 13.96 55.43 0.77 -27.12 16 9 Si 0.88 21.68 27.47 -169.99 -4.67 17.02 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 13 C 0.06 0.94 4.94 -3.83 -0.02 0.92 16 14 N -0.67 -9.08 5.65 -107.95 -0.61 -9.69 16 15 C 0.12 1.43 2.65 -68.86 -0.18 1.25 16 16 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 17 C 0.09 0.98 6.79 37.16 0.25 1.24 16 18 O -0.55 -5.98 12.01 -35.23 -0.42 -6.41 16 19 C -0.06 -0.62 4.59 -104.64 -0.48 -1.10 16 20 C -0.08 -0.92 8.00 -39.58 -0.32 -1.24 16 21 C -0.10 -0.93 10.04 -39.59 -0.40 -1.33 16 22 C -0.16 -1.52 10.03 -39.51 -0.40 -1.91 16 23 C 0.09 0.97 7.30 -39.42 -0.29 0.69 16 24 F -0.14 -1.67 17.27 2.25 0.04 -1.63 16 25 C -0.15 -1.63 9.65 -39.51 -0.38 -2.01 16 26 H 0.03 0.53 6.68 -51.93 -0.35 0.19 16 27 H 0.07 1.41 6.95 -51.93 -0.36 1.05 16 28 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 30 H 0.01 0.21 7.57 -51.92 -0.39 -0.19 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 32 H 0.07 1.05 7.36 -51.93 -0.38 0.67 16 33 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 34 H 0.34 4.61 6.25 -39.29 -0.25 4.36 16 35 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.56 7.35 -51.92 -0.38 0.18 16 37 H 0.37 2.53 9.12 45.56 0.42 2.94 16 38 H 0.14 1.71 7.46 -52.48 -0.39 1.32 16 39 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 40 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.13 1.22 8.04 -52.49 -0.42 0.80 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -31.40 336.21 -7.80 -39.20 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.36 Total: 4.06 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -2.62 Total: -20.49 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.16 Total: -36.81 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.42 Total: -6.41 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.40 -7.80 -39.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.675 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds