Wall clock time and date at job start Tue Mar 31 2020 05:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47665 * 2 1 4 4 C 1.53005 * 109.46927 * 119.99714 * 2 1 3 5 5 C 1.50696 * 109.47045 * 295.00243 * 4 2 1 6 6 H 1.08001 * 120.00099 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99925 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99758 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00292 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47069 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47348 * 119.99849 * 9 7 5 12 12 H 1.48502 * 109.47403 * 240.00125 * 9 7 5 13 13 C 1.53004 * 109.47399 * 239.99442 * 2 1 3 14 14 N 1.46900 * 109.46792 * 64.99992 * 13 2 1 15 15 C 1.46901 * 111.00190 * 179.97438 * 14 13 2 16 16 H 1.09001 * 109.46871 * 35.00308 * 15 14 13 17 17 C 1.53000 * 109.47143 * 275.00657 * 15 14 13 18 18 O 1.42903 * 109.46726 * 294.99498 * 17 15 14 19 19 C 1.50695 * 109.47325 * 155.00101 * 15 14 13 20 20 C 1.38266 * 119.98882 * 220.00460 * 19 15 14 21 21 C 1.38223 * 120.05012 * 180.02562 * 20 19 15 22 22 C 1.38210 * 120.02830 * 359.97438 * 21 20 19 23 23 C 1.38440 * 119.97296 * 0.02562 * 22 21 20 24 24 F 1.35103 * 120.02629 * 180.02562 * 23 22 21 25 25 C 1.38179 * 119.98583 * 39.73035 * 19 15 14 26 26 H 1.09004 * 109.47115 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46960 * 300.00011 * 1 2 3 28 28 H 1.08996 * 109.46885 * 60.00413 * 1 2 3 29 29 H 1.09004 * 109.46935 * 55.00394 * 4 2 1 30 30 H 1.09000 * 109.46919 * 174.99768 * 4 2 1 31 31 H 0.97001 * 119.99721 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.47096 * 305.00310 * 13 2 1 33 33 H 1.08994 * 109.47399 * 185.00307 * 13 2 1 34 34 H 1.00897 * 111.00501 * 303.95839 * 14 13 2 35 35 H 1.09002 * 109.47398 * 54.99743 * 17 15 14 36 36 H 1.09001 * 109.47194 * 174.99923 * 17 15 14 37 37 H 0.96700 * 113.99509 * 180.02562 * 18 17 15 38 38 H 1.08004 * 119.97443 * 359.97273 * 20 19 15 39 39 H 1.08000 * 119.98480 * 180.02562 * 21 20 19 40 40 H 1.08003 * 120.01749 * 180.02562 * 22 21 20 41 41 H 1.08004 * 120.01296 * 359.97438 * 25 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0805 0.9746 2.3756 7 6 1.9931 -0.4016 3.7283 8 7 2.6772 -1.5181 3.8512 9 14 1.4995 0.5635 5.2496 10 1 0.7419 1.7744 4.8434 11 1 0.6457 -0.2854 6.1190 12 1 2.7178 0.9684 5.9959 13 6 2.0401 -0.7214 -1.2492 14 7 1.6514 0.0372 -2.4456 15 6 2.1259 -0.6267 -3.6671 16 1 2.0825 -1.7076 -3.5333 17 6 3.5694 -0.2052 -3.9489 18 8 3.6091 1.1935 -4.2391 19 6 1.2507 -0.2287 -4.8275 20 6 0.8884 -1.1690 -5.7743 21 6 0.0861 -0.8052 -6.8394 22 6 -0.3554 0.4990 -6.9590 23 6 0.0067 1.4413 -6.0117 24 9 -0.4246 2.7164 -6.1272 25 6 0.8058 1.0745 -4.9419 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2057 31 1 2.9244 -1.8410 4.7318 32 1 1.6054 -1.7200 -1.2950 33 1 3.1263 -0.7996 -1.2055 34 1 0.6530 0.1792 -2.4753 35 1 4.1858 -0.4125 -3.0741 36 1 3.9511 -0.7645 -4.8031 37 1 4.4954 1.5307 -4.4285 38 1 1.2332 -2.1883 -5.6819 39 1 -0.1966 -1.5407 -7.5781 40 1 -0.9826 0.7830 -7.7911 41 1 1.0850 1.8077 -4.1996 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:47 Heat of formation + Delta-G solvation = -85.425166 kcal Electronic energy + Delta-G solvation = -21753.797108 eV Core-core repulsion = 18354.391191 eV Total energy + Delta-G solvation = -3399.405917 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.90997 -39.67766 -37.39895 -36.15195 -34.15640 -32.31510 -30.72993 -30.60587 -28.06494 -26.71249 -25.42777 -23.58178 -22.87896 -22.04757 -20.46955 -19.05750 -17.66834 -17.24095 -16.37081 -16.33845 -16.23792 -15.64338 -15.59976 -14.83122 -14.39108 -14.12646 -13.96027 -13.76448 -13.62764 -13.11028 -12.80634 -12.52837 -12.35595 -12.19288 -11.97430 -11.63998 -11.51100 -11.33904 -10.89164 -10.83591 -10.75570 -10.31874 -10.18422 -9.92818 -9.71832 -9.18741 -9.03389 -8.92976 -8.78231 -8.32750 -8.16855 -5.97432 -3.98226 1.01142 1.13954 3.32747 3.40416 3.44797 3.45922 4.12522 4.16619 4.36291 4.49708 4.53895 4.72868 4.93427 5.04125 5.19162 5.30970 5.38627 5.42435 5.47677 5.57731 5.73325 5.76930 5.82342 5.92354 6.05305 6.08600 6.13835 6.24823 6.37448 6.48861 6.56337 6.80476 6.94980 7.11826 7.17706 7.33137 7.60586 7.70310 7.72451 7.86149 8.03043 8.47207 9.08373 9.65304 11.14151 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025914 B = 0.003302 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.249276 B = 8478.871449 C = 8802.273063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 H 0.066 0.934 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.674 5.674 15 C 0.124 3.876 16 H 0.066 0.934 17 C 0.093 3.907 18 O -0.554 6.554 19 C -0.054 4.054 20 C -0.129 4.129 21 C -0.098 4.098 22 C -0.159 4.159 23 C 0.090 3.910 24 F -0.142 7.142 25 C -0.109 4.109 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.031 0.969 29 H 0.014 0.986 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.342 0.658 35 H 0.053 0.947 36 H 0.041 0.959 37 H 0.371 0.629 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 0.478 -22.411 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.307 5.307 15 C 0.014 3.986 16 H 0.084 0.916 17 C 0.014 3.986 18 O -0.358 6.358 19 C -0.055 4.055 20 C -0.147 4.147 21 C -0.116 4.116 22 C -0.177 4.177 23 C 0.071 3.929 24 F -0.121 7.121 25 C -0.128 4.128 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.217 0.783 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.848 0.779 -22.136 22.227 hybrid contribution -0.256 -0.147 0.751 0.808 sum -2.104 0.631 -21.384 21.497 Atomic orbital electron populations 1.21743 0.96682 1.00412 1.00337 1.21209 0.94856 1.00173 0.93970 0.91527 1.19112 0.96077 0.95347 0.90392 1.21282 1.34475 1.08247 0.90966 0.92489 1.25021 0.95343 0.95106 0.99118 1.69977 1.39187 1.21329 1.23245 0.86575 0.78255 0.80150 0.83266 1.19724 1.21139 1.21092 1.22233 1.00339 0.94349 0.89602 1.60630 1.19795 1.49976 1.00289 1.20575 0.93014 0.96478 0.88495 0.91650 1.22109 0.95449 0.82686 0.98327 1.86579 1.33250 1.23064 1.92856 1.19691 0.96642 0.92939 0.96208 1.21119 0.99201 0.99536 0.94872 1.20887 0.97408 0.95285 0.98000 1.21121 1.03200 0.93572 0.99856 1.17790 0.98770 0.79222 0.97124 1.91495 1.88153 1.36478 1.95933 1.21128 0.96571 0.97550 0.97522 0.94043 0.91823 0.94969 0.96781 0.96708 0.93181 0.95746 0.91473 0.83781 0.92912 0.94078 0.78323 0.85621 0.85258 0.85161 0.83296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.77 37.16 0.33 -2.20 16 2 C -0.08 -1.69 2.55 -90.61 -0.23 -1.92 16 3 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.32 8.41 -34.44 -0.29 -14.61 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.06 1.06 4.94 -3.82 -0.02 1.04 16 14 N -0.67 -9.80 5.63 -107.95 -0.61 -10.41 16 15 C 0.12 1.50 2.65 -68.87 -0.18 1.32 16 16 H 0.07 0.74 7.66 -51.93 -0.40 0.34 16 17 C 0.09 1.04 6.79 37.16 0.25 1.29 16 18 O -0.55 -6.54 12.06 -35.23 -0.43 -6.97 16 19 C -0.05 -0.63 4.59 -104.64 -0.48 -1.11 16 20 C -0.13 -1.25 9.67 -39.58 -0.38 -1.63 16 21 C -0.10 -0.87 10.04 -39.60 -0.40 -1.27 16 22 C -0.16 -1.59 10.03 -39.52 -0.40 -1.98 16 23 C 0.09 1.10 7.30 -39.42 -0.29 0.81 16 24 F -0.14 -1.86 17.27 2.25 0.04 -1.83 16 25 C -0.11 -1.38 7.98 -39.52 -0.32 -1.70 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.30 6.95 -51.93 -0.36 0.93 16 28 H 0.03 0.52 6.68 -51.93 -0.35 0.17 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 32 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 33 H 0.07 1.15 7.36 -51.93 -0.38 0.77 16 34 H 0.34 4.96 6.23 -39.29 -0.24 4.72 16 35 H 0.05 0.62 7.35 -51.93 -0.38 0.24 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.37 2.86 9.12 45.56 0.42 3.27 16 38 H 0.13 0.97 8.04 -52.48 -0.42 0.55 16 39 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 41 H 0.15 2.11 7.48 -52.48 -0.39 1.72 16 LS Contribution 339.85 15.07 5.12 5.12 Total: -1.00 -31.31 339.85 -8.18 -39.49 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.40 Total: 3.94 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -2.62 Total: -19.88 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.13 Total: -36.61 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.43 Total: -6.97 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.31 -8.18 -39.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.933 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds