Wall clock time and date at job start Tue Mar 31 2020 05:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 H 1.07996 * 119.99521 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00003 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00392 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46839 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47356 * 119.99073 * 9 7 5 12 12 H 1.48497 * 109.47175 * 239.99531 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 N 1.46895 * 109.46799 * 294.99463 * 13 2 1 15 15 C 1.46907 * 111.00034 * 179.97438 * 14 13 2 16 16 H 1.08994 * 109.46605 * 35.00289 * 15 14 13 17 17 C 1.53005 * 109.46965 * 275.00332 * 15 14 13 18 18 O 1.42891 * 109.47134 * 294.99735 * 17 15 14 19 19 C 1.50696 * 109.47058 * 155.00195 * 15 14 13 20 20 C 1.38249 * 119.97325 * 39.73066 * 19 15 14 21 21 C 1.38206 * 120.02193 * 179.72210 * 20 19 15 22 22 C 1.38458 * 119.97293 * 0.52796 * 21 20 19 23 23 F 1.35102 * 120.02467 * 179.72494 * 22 21 20 24 24 C 1.38455 * 119.95129 * 359.74482 * 22 21 20 25 25 C 1.38201 * 119.97330 * 359.97438 * 24 22 21 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 30 30 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 31 31 H 0.96995 * 120.00234 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47326 * 54.99931 * 13 2 1 33 33 H 1.09000 * 109.46904 * 175.00284 * 13 2 1 34 34 H 1.00909 * 110.99954 * 56.04982 * 14 13 2 35 35 H 1.08995 * 109.46954 * 55.00024 * 17 15 14 36 36 H 1.09004 * 109.46797 * 174.99854 * 17 15 14 37 37 H 0.96698 * 113.99935 * 179.97438 * 18 17 15 38 38 H 1.08001 * 119.98738 * 359.97438 * 20 19 15 39 39 H 1.08001 * 120.01096 * 180.29337 * 21 20 19 40 40 H 1.07998 * 120.01350 * 179.97438 * 24 22 21 41 41 H 1.08000 * 119.98673 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8512 9 14 1.4989 0.5628 -5.2497 10 1 0.7424 1.7744 -4.8434 11 1 2.7172 0.9667 -5.9965 12 1 0.6443 -0.2857 -6.1184 13 6 2.0400 -0.7213 1.2493 14 7 1.6515 0.0374 2.4456 15 6 2.1248 -0.6271 3.6673 16 1 3.0883 -1.0988 3.4742 17 6 1.1120 -1.6918 4.0938 18 8 -0.1171 -1.0609 4.4586 19 6 2.2757 0.3919 4.7671 20 6 1.3381 1.3977 4.9102 21 6 1.4725 2.3294 5.9221 22 6 2.5524 2.2616 6.7859 23 9 2.6877 3.1752 7.7720 24 6 3.4938 1.2572 6.6382 25 6 3.3543 0.3232 5.6291 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1263 -0.7996 -1.2055 30 1 1.6054 -1.7198 -1.2952 31 1 2.9228 -1.8423 -4.7318 32 1 1.6054 -1.7199 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 0.6528 0.1793 2.4753 35 1 0.9363 -2.3784 3.2657 36 1 1.5040 -2.2448 4.9474 37 1 -0.8070 -1.6772 4.7401 38 1 0.4982 1.4530 4.2335 39 1 0.7373 3.1123 6.0367 40 1 4.3368 1.2036 7.3111 41 1 4.0887 -0.4602 5.5134 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548940.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:49 Heat of formation + Delta-G solvation = -87.972222 kcal Electronic energy + Delta-G solvation = -21631.843698 eV Core-core repulsion = 18232.327332 eV Total energy + Delta-G solvation = -3399.516366 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.93728 -39.65315 -37.57120 -36.20568 -34.10527 -32.26152 -31.19457 -30.36079 -27.83978 -26.74214 -25.28024 -23.43624 -23.11788 -22.13584 -20.56598 -19.06587 -17.81610 -17.58163 -16.44951 -16.25645 -15.93281 -15.65093 -15.42456 -15.02384 -14.51427 -14.29429 -13.87669 -13.72413 -13.47998 -13.14185 -12.93329 -12.61963 -12.43833 -12.06807 -11.96462 -11.70646 -11.48490 -11.25434 -10.98928 -10.87558 -10.76840 -10.33922 -10.26802 -10.14905 -9.73007 -9.17380 -9.11516 -8.96795 -8.57397 -8.33617 -8.16522 -5.98254 -3.99166 1.11086 1.23878 3.32027 3.39770 3.43959 3.53135 4.01587 4.22092 4.41539 4.50342 4.66230 4.71130 4.82845 4.97327 5.23417 5.25577 5.30169 5.37747 5.39862 5.50802 5.76142 5.78046 5.86620 6.00366 6.05364 6.07737 6.21300 6.27017 6.44589 6.53442 6.55448 6.85652 6.94611 7.10474 7.16603 7.30881 7.42957 7.64742 7.69573 7.85138 8.02109 8.46148 9.07450 9.64443 11.13321 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026544 B = 0.003119 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.582828 B = 8974.054428 C = 9289.016525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.066 0.934 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.679 5.679 15 C 0.126 3.874 16 H 0.098 0.902 17 C 0.048 3.952 18 O -0.565 6.565 19 C -0.068 4.068 20 C -0.044 4.044 21 C -0.160 4.160 22 C 0.088 3.912 23 F -0.146 7.146 24 C -0.159 4.159 25 C -0.091 4.091 26 H 0.062 0.938 27 H 0.032 0.968 28 H 0.040 0.960 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.259 0.741 32 H 0.023 0.977 33 H 0.068 0.932 34 H 0.349 0.651 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.378 0.622 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.376 0.615 21.421 21.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.065 4.065 14 N -0.311 5.311 15 C 0.015 3.985 16 H 0.116 0.884 17 C -0.031 4.031 18 O -0.370 6.370 19 C -0.069 4.069 20 C -0.062 4.062 21 C -0.178 4.178 22 C 0.069 3.931 23 F -0.125 7.125 24 C -0.178 4.178 25 C -0.110 4.110 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.170 0.830 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.225 0.775 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.422 1.504 21.115 21.217 hybrid contribution -1.027 -0.744 -0.558 1.385 sum -2.449 0.760 20.558 20.717 Atomic orbital electron populations 1.21733 0.96629 1.00370 1.00323 1.21220 0.94902 1.00156 0.94021 0.91568 1.19110 0.96115 0.95323 0.90385 1.21281 1.34491 1.08260 0.90966 0.92492 1.25020 0.95348 0.95094 0.99119 1.69974 1.39203 1.21289 1.23262 0.86576 0.78263 0.80142 0.83274 1.19725 1.21080 1.21150 1.22210 1.00244 0.94524 0.89545 1.60640 1.20792 1.49395 1.00311 1.20596 0.97568 0.90999 0.89331 0.88422 1.22889 0.86021 0.95394 0.98829 1.86453 1.23595 1.37986 1.88977 1.19732 0.94593 0.96647 0.95900 1.20805 0.98253 0.91894 0.95274 1.21166 0.98222 1.01760 0.96695 1.17728 0.97206 0.89588 0.88620 1.91472 1.95859 1.65228 1.59944 1.20998 0.99873 0.95919 1.01003 1.20854 0.97437 0.98444 0.94267 0.91881 0.94896 0.94120 0.96668 0.96806 0.93171 0.95829 0.91398 0.83014 0.92962 0.93401 0.77504 0.84742 0.85114 0.85158 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.77 37.16 0.33 -2.12 16 2 C -0.08 -1.68 2.55 -90.62 -0.23 -1.91 16 3 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.22 8.41 -34.44 -0.29 -14.51 16 6 H 0.06 1.55 7.05 -52.49 -0.37 1.18 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 13 C 0.06 1.04 4.94 -3.82 -0.02 1.02 16 14 N -0.68 -9.54 5.70 -107.95 -0.61 -10.16 16 15 C 0.13 1.45 2.65 -68.86 -0.18 1.27 16 16 H 0.10 1.07 7.66 -51.93 -0.40 0.68 16 17 C 0.05 0.47 6.71 37.16 0.25 0.72 16 18 O -0.57 -5.38 11.48 -35.23 -0.40 -5.79 16 19 C -0.07 -0.79 4.83 -104.62 -0.51 -1.29 16 20 C -0.04 -0.53 8.32 -39.59 -0.33 -0.85 16 21 C -0.16 -1.83 10.03 -39.51 -0.40 -2.23 16 22 C 0.09 1.03 7.30 -39.42 -0.29 0.75 16 23 F -0.15 -1.79 17.27 2.25 0.04 -1.75 16 24 C -0.16 -1.68 10.03 -39.52 -0.40 -2.08 16 25 C -0.09 -0.95 9.67 -39.59 -0.38 -1.34 16 26 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 27 H 0.03 0.51 6.68 -51.93 -0.35 0.17 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.02 0.38 7.36 -51.93 -0.38 0.00 16 33 H 0.07 1.14 8.06 -51.93 -0.42 0.73 16 34 H 0.35 4.88 5.53 -39.29 -0.22 4.67 16 35 H 0.05 0.53 7.35 -51.93 -0.38 0.15 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.38 2.10 9.12 45.56 0.42 2.52 16 38 H 0.13 1.62 7.01 -52.49 -0.37 1.25 16 39 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.13 1.05 8.04 -52.49 -0.42 0.63 16 LS Contribution 338.63 15.07 5.10 5.10 Total: -1.00 -30.91 338.63 -8.17 -39.08 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.34 Total: 3.50 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -2.67 Total: -20.52 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.12 Total: -36.24 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.40 Total: -5.79 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.91 -8.17 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548940.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.892 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds