Wall clock time and date at job start Tue Mar 31 2020 05:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00262 * 2 1 3 5 5 C 1.50697 * 109.47050 * 294.99857 * 4 2 1 6 6 H 1.08007 * 120.00134 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99937 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99960 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99815 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47278 * 90.00060 * 9 7 5 11 11 H 1.48499 * 109.46779 * 210.00147 * 9 7 5 12 12 H 1.48507 * 109.47188 * 329.99960 * 9 7 5 13 13 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 14 14 N 1.46898 * 109.47386 * 64.99548 * 13 2 1 15 15 C 1.46901 * 111.00283 * 180.02562 * 14 13 2 16 16 H 1.08999 * 109.46930 * 324.99771 * 15 14 13 17 17 C 1.52995 * 109.47388 * 85.00229 * 15 14 13 18 18 O 1.42899 * 109.47006 * 64.99924 * 17 15 14 19 19 C 1.50700 * 109.47278 * 205.00517 * 15 14 13 20 20 C 1.38250 * 119.97183 * 319.72074 * 19 15 14 21 21 C 1.38196 * 120.02597 * 179.76949 * 20 19 15 22 22 C 1.38459 * 119.97401 * 0.50886 * 21 20 19 23 23 F 1.35098 * 120.02839 * 179.76647 * 22 21 20 24 24 C 1.38469 * 119.94745 * 359.74473 * 22 21 20 25 25 C 1.38191 * 119.97235 * 0.02562 * 24 22 21 26 26 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 27 27 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47065 * 55.00225 * 4 2 1 30 30 H 1.09000 * 109.46818 * 175.00170 * 4 2 1 31 31 H 0.96996 * 119.99901 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47346 * 184.99897 * 13 2 1 33 33 H 1.09002 * 109.47196 * 304.99671 * 13 2 1 34 34 H 1.00907 * 111.00007 * 56.04410 * 14 13 2 35 35 H 1.09000 * 109.47517 * 185.00330 * 17 15 14 36 36 H 1.09000 * 109.46648 * 305.00256 * 17 15 14 37 37 H 0.96704 * 113.99749 * 180.02562 * 18 17 15 38 38 H 1.08007 * 119.98764 * 0.02562 * 20 19 15 39 39 H 1.07998 * 120.01753 * 180.25674 * 21 20 19 40 40 H 1.08002 * 120.00940 * 179.97438 * 24 22 21 41 41 H 1.08000 * 119.98906 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0570 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9925 -0.4024 3.7283 8 7 2.6756 -1.5194 3.8511 9 14 1.4977 0.5620 5.2497 10 1 0.1703 0.0936 5.7227 11 1 2.5066 0.3517 6.3188 12 1 1.4229 2.0074 4.9170 13 6 2.0401 -0.7211 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 2.1247 -0.6270 -3.6673 16 1 3.0883 -1.0985 -3.4743 17 6 1.1122 -1.6916 -4.0939 18 8 -0.1171 -1.0608 -4.4587 19 6 2.2756 0.3921 -4.7672 20 6 1.3319 1.3912 -4.9173 21 6 1.4718 2.3291 -5.9226 22 6 2.5519 2.2617 -6.7862 23 9 2.6871 3.1752 -7.7723 24 6 3.4937 1.2574 -6.6381 25 6 3.3542 0.3235 -5.6292 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6055 -1.7198 1.2950 30 1 3.1264 -0.7994 1.2055 31 1 2.9228 -1.8424 4.7316 32 1 3.1264 -0.7994 -1.2057 33 1 1.6055 -1.7197 -1.2952 34 1 1.9881 0.9875 -2.3966 35 1 1.5041 -2.2446 -4.9475 36 1 0.9364 -2.3783 -3.2658 37 1 -0.8070 -1.6772 -4.7402 38 1 0.4873 1.4412 -4.2461 39 1 0.7367 3.1120 -6.0371 40 1 4.3364 1.2037 -7.3115 41 1 4.0889 -0.4596 -5.5132 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548941.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:52 Heat of formation + Delta-G solvation = -86.070427 kcal Electronic energy + Delta-G solvation = -21621.314906 eV Core-core repulsion = 18221.881008 eV Total energy + Delta-G solvation = -3399.433897 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.01459 -39.68144 -37.34086 -36.10084 -34.12229 -32.24310 -31.27023 -30.37107 -27.87176 -26.71169 -25.18776 -23.34831 -23.17288 -22.11475 -20.42995 -19.15786 -17.78813 -17.47116 -16.43020 -16.37498 -16.07883 -15.71742 -15.01882 -14.76793 -14.44063 -14.31575 -13.78472 -13.76034 -13.53709 -13.37736 -12.89492 -12.76952 -12.38145 -12.20805 -11.78287 -11.55672 -11.36313 -11.08467 -10.98595 -10.83030 -10.76074 -10.27970 -10.23635 -9.95736 -9.68647 -9.20022 -9.14994 -8.96930 -8.65695 -8.32796 -8.14722 -5.97705 -3.98601 0.99898 1.14861 3.33310 3.39595 3.43001 3.46441 4.13315 4.17132 4.35358 4.49187 4.58804 4.66911 4.76159 5.14865 5.21459 5.29403 5.38273 5.43881 5.49913 5.59284 5.67945 5.79895 5.87120 5.93676 6.00283 6.15958 6.18576 6.37673 6.46503 6.56286 6.71126 6.78385 7.02074 7.19876 7.20569 7.33369 7.60519 7.69536 7.70323 7.85244 8.02607 8.46885 9.07822 9.64852 11.13882 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026596 B = 0.003119 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.546213 B = 8973.889931 C = 9289.994382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.063 3.937 14 N -0.671 5.671 15 C 0.126 3.874 16 H 0.063 0.937 17 C 0.094 3.906 18 O -0.553 6.553 19 C -0.093 4.093 20 C -0.045 4.045 21 C -0.160 4.160 22 C 0.092 3.908 23 F -0.145 7.145 24 C -0.161 4.161 25 C -0.089 4.089 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.038 0.962 29 H 0.015 0.985 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.025 0.975 33 H 0.066 0.934 34 H 0.341 0.659 35 H 0.040 0.960 36 H 0.051 0.949 37 H 0.370 0.630 38 H 0.147 0.853 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.026 1.729 -21.548 21.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.066 4.066 14 N -0.302 5.302 15 C 0.016 3.984 16 H 0.081 0.919 17 C 0.015 3.985 18 O -0.357 6.357 19 C -0.093 4.093 20 C -0.064 4.064 21 C -0.179 4.179 22 C 0.073 3.927 23 F -0.124 7.124 24 C -0.179 4.179 25 C -0.107 4.107 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.160 0.840 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.216 0.784 38 H 0.165 0.835 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.221 1.906 -21.317 21.437 hybrid contribution 0.571 0.183 0.632 0.871 sum -0.649 2.089 -20.685 20.801 Atomic orbital electron populations 1.21572 0.95594 1.00491 1.00196 1.21189 0.96097 0.98897 0.93866 0.92828 1.19115 0.95853 0.95539 0.90472 1.21244 1.34511 1.08300 0.90982 0.92555 1.25020 0.95332 0.95107 0.99103 1.69961 1.39140 1.21294 1.23356 0.86631 0.78215 0.80458 0.82926 1.20719 1.21342 1.19893 1.22243 0.97026 0.97796 0.89520 1.60592 1.63688 1.05592 1.00376 1.20525 0.95778 0.93051 0.89010 0.91905 1.22100 0.85271 0.93593 0.97517 1.86564 1.23242 1.37141 1.88774 1.19916 0.94962 0.96994 0.97447 1.21023 0.98107 0.91463 0.95762 1.21227 0.98147 1.01768 0.96772 1.17780 0.97104 0.89415 0.88415 1.91480 1.95840 1.65170 1.59870 1.21021 0.99977 0.95943 1.00995 1.20910 0.97468 0.98245 0.94124 0.92904 0.93732 0.94307 0.96623 0.96984 0.93118 0.95718 0.91584 0.84047 0.94194 0.93099 0.78402 0.83515 0.84924 0.85068 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.89 37.16 0.33 -2.00 16 2 C -0.08 -1.63 2.48 -90.62 -0.22 -1.86 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.28 8.41 -34.44 -0.29 -14.57 16 6 H 0.06 1.54 7.06 -52.48 -0.37 1.17 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 13 C 0.06 1.03 4.87 -3.83 -0.02 1.01 16 14 N -0.67 -9.22 5.10 -107.96 -0.55 -9.77 16 15 C 0.13 1.46 2.65 -68.87 -0.18 1.28 16 16 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 17 C 0.09 1.00 6.79 37.15 0.25 1.25 16 18 O -0.55 -6.04 12.01 -35.23 -0.42 -6.46 16 19 C -0.09 -1.03 4.59 -104.62 -0.48 -1.51 16 20 C -0.05 -0.52 8.00 -39.59 -0.32 -0.83 16 21 C -0.16 -1.74 10.03 -39.52 -0.40 -2.14 16 22 C 0.09 1.03 7.30 -39.41 -0.29 0.74 16 23 F -0.14 -1.70 17.27 2.25 0.04 -1.66 16 24 C -0.16 -1.61 10.03 -39.51 -0.40 -2.00 16 25 C -0.09 -0.88 9.67 -39.60 -0.38 -1.26 16 26 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 27 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 33 H 0.07 1.10 7.36 -51.93 -0.38 0.72 16 34 H 0.34 4.66 8.00 -39.29 -0.31 4.35 16 35 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 0.57 7.35 -51.93 -0.38 0.19 16 37 H 0.37 2.57 9.12 45.56 0.42 2.99 16 38 H 0.15 1.77 7.46 -52.48 -0.39 1.38 16 39 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 40 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.13 1.01 8.04 -52.49 -0.42 0.59 16 LS Contribution 342.07 15.07 5.15 5.15 Total: -1.00 -30.89 342.07 -8.20 -39.09 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.52 Total: 2.99 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -2.61 Total: -19.84 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.19 Total: -35.94 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.42 Total: -6.46 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.89 -8.20 -39.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548941.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.979 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds