Wall clock time and date at job start Tue Mar 31 2020 05:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.50698 * 109.46933 * 65.00194 * 4 2 1 6 6 H 1.08003 * 120.00121 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00035 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00056 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00389 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.46722 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47386 * 119.99872 * 9 7 5 12 12 H 1.48501 * 109.47367 * 240.00263 * 9 7 5 13 13 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 14 14 N 1.46901 * 109.47509 * 294.99972 * 13 2 1 15 15 C 1.46897 * 111.00075 * 180.02562 * 14 13 2 16 16 H 1.09003 * 109.46849 * 324.99644 * 15 14 13 17 17 C 1.52998 * 109.47421 * 84.99907 * 15 14 13 18 18 O 1.42894 * 109.47363 * 64.99897 * 17 15 14 19 19 C 1.50702 * 109.46850 * 205.00034 * 15 14 13 20 20 C 1.38235 * 119.97388 * 319.71779 * 19 15 14 21 21 C 1.38199 * 120.02572 * 179.76885 * 20 19 15 22 22 C 1.38460 * 119.97242 * 0.51014 * 21 20 19 23 23 F 1.35102 * 120.02484 * 179.76686 * 22 21 20 24 24 C 1.38455 * 119.94745 * 359.74624 * 22 21 20 25 25 C 1.38196 * 119.97742 * 359.97438 * 24 22 21 26 26 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 29 29 H 1.09000 * 109.46875 * 184.99989 * 4 2 1 30 30 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 31 31 H 0.97004 * 120.00105 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47317 * 55.00458 * 13 2 1 33 33 H 1.09007 * 109.46669 * 175.00116 * 13 2 1 34 34 H 1.00900 * 110.99586 * 303.95652 * 14 13 2 35 35 H 1.09004 * 109.47092 * 185.00210 * 17 15 14 36 36 H 1.09002 * 109.47060 * 304.99629 * 17 15 14 37 37 H 0.96696 * 114.00542 * 179.97438 * 18 17 15 38 38 H 1.08001 * 119.98942 * 0.02913 * 20 19 15 39 39 H 1.08001 * 120.01717 * 180.25897 * 21 20 19 40 40 H 1.08002 * 120.01398 * 179.97438 * 24 22 21 41 41 H 1.08004 * 119.98965 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0800 0.9741 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6765 -1.5188 -3.8511 9 14 1.4998 0.5633 -5.2496 10 1 0.7433 1.7750 -4.8433 11 1 2.7181 0.9681 -5.9958 12 1 0.6460 -0.2855 -6.1189 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.1256 -0.6265 3.6672 16 1 2.0822 -1.7074 3.5334 17 6 3.5691 -0.2051 3.9492 18 8 3.6090 1.1935 4.2393 19 6 1.2503 -0.2284 4.8275 20 6 0.8149 1.0781 4.9478 21 6 0.0082 1.4433 6.0088 22 6 -0.3552 0.5024 6.9573 23 9 -1.1399 0.8594 7.9976 24 6 0.0858 -0.8046 6.8387 25 6 0.8877 -1.1688 5.7737 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1264 -0.7995 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 2.9237 -1.8418 -4.7317 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7994 1.2057 34 1 1.9881 0.9873 2.3967 35 1 3.9507 -0.7644 4.8034 36 1 4.1856 -0.4124 3.0745 37 1 4.4952 1.5309 4.4288 38 1 1.1017 1.8128 4.2100 39 1 -0.3353 2.4632 6.1003 40 1 -0.1966 -1.5393 7.5782 41 1 1.2315 -2.1884 5.6808 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548943.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:54 Heat of formation + Delta-G solvation = -88.343296 kcal Electronic energy + Delta-G solvation = -21618.565136 eV Core-core repulsion = 18219.032679 eV Total energy + Delta-G solvation = -3399.532457 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.94150 -39.64786 -37.53803 -36.15931 -34.11759 -32.24697 -31.20014 -30.39406 -27.83550 -26.67370 -25.13808 -23.39439 -23.12601 -22.16760 -20.62239 -19.13983 -17.80115 -17.57942 -16.36602 -16.23124 -15.92354 -15.65587 -15.31974 -14.98661 -14.52633 -14.30097 -13.89295 -13.77673 -13.51998 -13.21301 -12.92136 -12.53972 -12.28251 -12.20135 -11.80971 -11.58280 -11.40683 -11.29886 -10.98836 -10.86554 -10.76465 -10.29208 -10.25271 -10.18003 -9.70875 -9.16613 -9.11922 -8.96133 -8.57147 -8.33676 -8.14384 -5.98425 -3.99272 1.10733 1.23534 3.31760 3.39504 3.43741 3.52851 4.02089 4.21695 4.41352 4.50152 4.66304 4.70838 4.82515 4.97604 5.23833 5.25604 5.30196 5.37469 5.40547 5.50186 5.71334 5.83590 5.88001 6.00520 6.07430 6.14652 6.25071 6.39070 6.50635 6.57882 6.69308 6.85647 7.01468 7.19013 7.19925 7.31582 7.43604 7.63668 7.69301 7.84617 8.01968 8.46265 9.07394 9.64315 11.13147 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029065 B = 0.003102 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.137168 B = 9023.038876 C = 9373.965798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.676 5.676 15 C 0.126 3.874 16 H 0.097 0.903 17 C 0.048 3.952 18 O -0.565 6.565 19 C -0.067 4.067 20 C -0.044 4.044 21 C -0.160 4.160 22 C 0.088 3.912 23 F -0.146 7.146 24 C -0.159 4.159 25 C -0.092 4.092 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.259 0.741 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.348 0.652 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.378 0.622 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 2.176 21.364 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.066 4.066 14 N -0.307 5.307 15 C 0.016 3.984 16 H 0.115 0.885 17 C -0.032 4.032 18 O -0.370 6.370 19 C -0.068 4.068 20 C -0.062 4.062 21 C -0.179 4.179 22 C 0.068 3.932 23 F -0.125 7.125 24 C -0.178 4.178 25 C -0.110 4.110 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.167 0.833 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.225 0.775 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.069 1.737 21.186 21.284 hybrid contribution 1.261 0.619 -0.694 1.567 sum 0.192 2.355 20.492 20.628 Atomic orbital electron populations 1.21588 0.95661 1.00576 1.00196 1.21191 0.96049 0.98927 0.93902 0.92809 1.19120 0.95828 0.95580 0.90467 1.21282 1.34413 1.08294 0.90974 0.92494 1.25022 0.95350 0.95101 0.99114 1.69977 1.39242 1.21277 1.23253 0.86579 0.78238 0.80166 0.83285 1.19721 1.21141 1.21085 1.22223 0.97149 0.97690 0.89493 1.60591 1.63367 1.06291 1.00457 1.20588 0.89269 0.99179 0.89383 0.88475 1.22891 0.98209 0.82688 0.99368 1.86448 1.34282 1.23277 1.93023 1.19730 0.98042 0.93663 0.95392 1.20807 0.93589 0.96105 0.95693 1.21169 1.01538 0.99625 0.95521 1.17730 0.94698 0.94049 0.86684 1.91473 1.72332 1.92562 1.56148 1.20994 1.01447 0.94776 1.00592 1.20854 0.97239 0.99452 0.93494 0.92797 0.94180 0.93888 0.97000 0.96567 0.93176 0.91483 0.95770 0.83274 0.93444 0.92915 0.77474 0.84678 0.85128 0.85184 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 2 C -0.08 -1.63 2.48 -90.62 -0.22 -1.86 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.69 4.45 -27.89 -0.12 0.57 16 5 C -0.51 -14.23 8.41 -34.44 -0.29 -14.52 16 6 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 9 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.06 1.02 4.87 -3.82 -0.02 1.00 16 14 N -0.68 -9.28 5.16 -107.95 -0.56 -9.84 16 15 C 0.13 1.44 2.65 -68.87 -0.18 1.25 16 16 H 0.10 1.05 7.66 -51.93 -0.40 0.65 16 17 C 0.05 0.47 6.70 37.16 0.25 0.72 16 18 O -0.57 -5.39 11.43 -35.23 -0.40 -5.80 16 19 C -0.07 -0.77 4.83 -104.62 -0.51 -1.28 16 20 C -0.04 -0.51 8.31 -39.60 -0.33 -0.84 16 21 C -0.16 -1.82 10.03 -39.51 -0.40 -2.21 16 22 C 0.09 1.02 7.30 -39.42 -0.29 0.73 16 23 F -0.15 -1.78 17.27 2.25 0.04 -1.74 16 24 C -0.16 -1.67 10.03 -39.52 -0.40 -2.06 16 25 C -0.09 -0.94 9.67 -39.59 -0.38 -1.33 16 26 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 33 H 0.02 0.39 7.36 -51.93 -0.38 0.01 16 34 H 0.35 4.81 7.29 -39.29 -0.29 4.52 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.05 0.54 7.35 -51.93 -0.38 0.15 16 37 H 0.38 2.14 9.12 45.56 0.42 2.55 16 38 H 0.14 1.60 6.99 -52.49 -0.37 1.23 16 39 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.13 1.03 8.04 -52.48 -0.42 0.61 16 LS Contribution 340.84 15.07 5.14 5.14 Total: -1.00 -30.87 340.84 -8.19 -39.07 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.47 Total: 3.05 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -2.66 Total: -20.40 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.18 Total: -35.94 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.40 Total: -5.80 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.87 -8.19 -39.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548943.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.277 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds