Wall clock time and date at job start Tue Mar 31 2020 05:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46891 * 2 1 4 4 C 1.52996 * 109.47271 * 119.99537 * 2 1 3 5 5 C 1.50694 * 109.47570 * 295.00231 * 4 2 1 6 6 H 1.08005 * 119.99880 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00268 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99928 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00004 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46700 * 90.00304 * 9 7 5 11 11 H 1.48497 * 109.47018 * 210.00289 * 9 7 5 12 12 H 1.48500 * 109.46962 * 330.00651 * 9 7 5 13 13 C 1.52997 * 109.46923 * 240.00092 * 2 1 3 14 14 N 1.46900 * 109.47596 * 64.99836 * 13 2 1 15 15 C 1.46893 * 111.00285 * 180.02562 * 14 13 2 16 16 H 1.08997 * 109.47369 * 34.99471 * 15 14 13 17 17 C 1.53004 * 109.47153 * 275.00034 * 15 14 13 18 18 O 1.42899 * 109.47092 * 295.00157 * 17 15 14 19 19 C 1.50696 * 109.47186 * 155.00135 * 15 14 13 20 20 C 1.38248 * 119.97128 * 219.99749 * 19 15 14 21 21 C 1.38196 * 120.02483 * 179.97438 * 20 19 15 22 22 C 1.38458 * 119.97492 * 0.02562 * 21 20 19 23 23 F 1.35104 * 120.02786 * 179.97438 * 22 21 20 24 24 C 1.38465 * 119.94675 * 0.24873 * 22 21 20 25 25 C 1.38196 * 119.97501 * 359.51590 * 24 22 21 26 26 H 1.08993 * 109.47612 * 59.99930 * 1 2 3 27 27 H 1.09002 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47175 * 300.00028 * 1 2 3 29 29 H 1.09006 * 109.47049 * 55.00542 * 4 2 1 30 30 H 1.09003 * 109.47243 * 175.00057 * 4 2 1 31 31 H 0.96997 * 119.99963 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47110 * 304.99387 * 13 2 1 33 33 H 1.09007 * 109.46808 * 184.99947 * 13 2 1 34 34 H 1.00903 * 110.99473 * 56.04354 * 14 13 2 35 35 H 1.08998 * 109.47125 * 54.99393 * 17 15 14 36 36 H 1.08999 * 109.47143 * 175.00088 * 17 15 14 37 37 H 0.96699 * 114.00087 * 179.97438 * 18 17 15 38 38 H 1.08002 * 119.98915 * 359.97438 * 20 19 15 39 39 H 1.07995 * 120.01604 * 180.02562 * 21 20 19 40 40 H 1.08007 * 120.01064 * 179.75151 * 24 22 21 41 41 H 1.07993 * 119.98776 * 180.24915 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6414 0.0571 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9924 -0.4021 3.7284 8 7 2.6756 -1.5191 3.8512 9 14 1.4989 0.5631 5.2497 10 1 0.1713 0.0957 5.7232 11 1 2.5080 0.3524 6.3185 12 1 1.4249 2.0083 4.9165 13 6 2.0399 -0.7212 -1.2492 14 7 1.6513 0.0374 -2.4457 15 6 2.1246 -0.6272 -3.6672 16 1 2.0807 -1.7080 -3.5332 17 6 3.5683 -0.2067 -3.9499 18 8 3.6089 1.1918 -4.2404 19 6 1.2491 -0.2288 -4.8272 20 6 0.8860 -1.1692 -5.7734 21 6 0.0828 -0.8051 -6.8374 22 6 -0.3580 0.5021 -6.9559 23 9 -1.1429 0.8593 -7.9959 24 6 0.0110 1.4443 -6.0107 25 6 0.8104 1.0769 -4.9450 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6054 -1.7198 1.2952 30 1 3.1264 -0.7993 1.2056 31 1 2.9229 -1.8420 4.7318 32 1 1.6054 -1.7198 -1.2951 33 1 3.1263 -0.7994 -1.2056 34 1 1.9881 0.9873 -2.3967 35 1 4.1850 -0.4141 -3.0754 36 1 3.9491 -0.7665 -4.8041 37 1 4.4954 1.5287 -4.4296 38 1 1.2303 -2.1887 -5.6810 39 1 -0.2011 -1.5399 -7.5761 40 1 -0.3289 2.4652 -6.1044 41 1 1.0950 1.8107 -4.2055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548944.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:56 Heat of formation + Delta-G solvation = -88.307506 kcal Electronic energy + Delta-G solvation = -21618.376013 eV Core-core repulsion = 18218.845108 eV Total energy + Delta-G solvation = -3399.530905 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.94096 -39.64685 -37.53721 -36.15884 -34.11723 -32.24693 -31.20033 -30.39352 -27.83548 -26.67342 -25.13826 -23.39408 -23.12519 -22.16582 -20.62217 -19.13923 -17.79969 -17.57988 -16.36469 -16.23110 -15.92386 -15.65391 -15.31915 -14.98534 -14.52715 -14.30395 -13.89296 -13.77693 -13.52085 -13.21204 -12.92092 -12.54037 -12.28221 -12.19650 -11.80852 -11.58295 -11.40628 -11.29868 -10.98862 -10.83792 -10.78404 -10.28789 -10.27052 -10.18256 -9.70391 -9.16361 -9.11926 -8.97217 -8.57044 -8.33258 -8.14339 -5.98217 -3.99124 1.10719 1.23558 3.33004 3.39280 3.42631 3.52867 4.02112 4.21680 4.41381 4.50211 4.66358 4.70818 4.82514 4.97643 5.23900 5.25633 5.30180 5.37587 5.40578 5.50236 5.71351 5.83610 5.88029 6.00538 6.07434 6.14694 6.25083 6.39038 6.50643 6.57900 6.69279 6.85654 7.01449 7.19037 7.19858 7.31635 7.43624 7.63698 7.69213 7.84668 8.02073 8.46367 9.07291 9.64366 11.13352 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029054 B = 0.003103 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.502947 B = 9022.189311 C = 9373.617177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.063 3.937 14 N -0.676 5.676 15 C 0.127 3.873 16 H 0.097 0.903 17 C 0.048 3.952 18 O -0.565 6.565 19 C -0.067 4.067 20 C -0.092 4.092 21 C -0.159 4.159 22 C 0.088 3.912 23 F -0.146 7.146 24 C -0.160 4.160 25 C -0.044 4.044 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.016 0.984 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.348 0.652 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.378 0.622 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.172 2.164 -21.348 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.307 5.307 15 C 0.016 3.984 16 H 0.115 0.885 17 C -0.032 4.032 18 O -0.370 6.370 19 C -0.068 4.068 20 C -0.110 4.110 21 C -0.178 4.178 22 C 0.068 3.932 23 F -0.125 7.125 24 C -0.179 4.179 25 C -0.062 4.062 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.167 0.833 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.225 0.775 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.054 1.725 -21.167 21.263 hybrid contribution 1.243 0.623 0.689 1.552 sum 0.188 2.348 -20.478 20.613 Atomic orbital electron populations 1.21586 0.95663 1.00580 1.00191 1.21188 0.96046 0.98932 0.93906 0.92809 1.19114 0.95825 0.95566 0.90449 1.21244 1.34518 1.08308 0.90984 0.92554 1.25019 0.95328 0.95104 0.99101 1.69962 1.39135 1.21298 1.23359 0.86631 0.78229 0.80455 0.82920 1.20706 1.21340 1.19895 1.22221 0.97149 0.97688 0.89489 1.60576 1.63406 1.06290 1.00457 1.20585 0.89274 0.99174 0.89374 0.88475 1.22892 0.98210 0.82690 0.99364 1.86451 1.34264 1.23292 1.93025 1.19731 0.98009 0.93684 0.95408 1.20853 0.97222 0.99444 0.93517 1.20994 1.01417 0.94796 1.00603 1.17733 0.94667 0.94029 0.86731 1.91473 1.72315 1.92560 1.56166 1.21170 1.01596 0.99585 0.95506 1.20806 0.93635 0.96104 0.95643 0.93880 0.94179 0.92811 0.96582 0.97002 0.93115 0.91485 0.95770 0.83264 0.92915 0.93443 0.77475 0.85402 0.85184 0.85128 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 2 C -0.08 -1.63 2.48 -90.62 -0.22 -1.86 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.71 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.26 8.41 -34.44 -0.29 -14.55 16 6 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 9 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.06 1.02 4.87 -3.83 -0.02 1.01 16 14 N -0.68 -9.29 5.16 -107.96 -0.56 -9.84 16 15 C 0.13 1.44 2.65 -68.87 -0.18 1.25 16 16 H 0.10 1.05 7.66 -51.93 -0.40 0.65 16 17 C 0.05 0.47 6.71 37.16 0.25 0.72 16 18 O -0.57 -5.40 11.45 -35.23 -0.40 -5.81 16 19 C -0.07 -0.77 4.83 -104.62 -0.51 -1.28 16 20 C -0.09 -0.94 9.67 -39.59 -0.38 -1.33 16 21 C -0.16 -1.67 10.03 -39.52 -0.40 -2.06 16 22 C 0.09 1.02 7.30 -39.42 -0.29 0.74 16 23 F -0.15 -1.78 17.27 2.25 0.04 -1.74 16 24 C -0.16 -1.82 10.03 -39.51 -0.40 -2.21 16 25 C -0.04 -0.51 8.32 -39.59 -0.33 -0.84 16 26 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 33 H 0.02 0.39 7.36 -51.92 -0.38 0.01 16 34 H 0.35 4.81 7.29 -39.29 -0.29 4.53 16 35 H 0.05 0.54 7.35 -51.93 -0.38 0.15 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.38 2.14 9.12 45.56 0.42 2.56 16 38 H 0.13 1.03 8.04 -52.49 -0.42 0.61 16 39 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 41 H 0.14 1.60 6.99 -52.49 -0.37 1.23 16 LS Contribution 340.86 15.07 5.14 5.14 Total: -1.00 -30.86 340.86 -8.19 -39.05 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.47 Total: 3.09 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -2.66 Total: -20.40 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.18 Total: -35.95 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.40 Total: -5.81 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.86 -8.19 -39.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548944.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.255 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds