Wall clock time and date at job start Tue Mar 31 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47228 * 2 1 4 4 C 1.53004 * 109.47180 * 239.99350 * 2 1 3 5 5 C 1.50702 * 109.46975 * 65.00513 * 4 2 1 6 6 H 1.08005 * 119.99834 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00042 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00098 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99796 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.46980 * 90.00443 * 9 7 5 11 11 H 1.48503 * 109.46956 * 210.00288 * 9 7 5 12 12 H 1.48503 * 109.47277 * 329.99964 * 9 7 5 13 13 C 1.53002 * 109.46761 * 119.99769 * 2 1 3 14 14 N 1.46900 * 109.47312 * 294.99961 * 13 2 1 15 15 C 1.46896 * 111.00713 * 179.97438 * 14 13 2 16 16 C 1.52992 * 109.47500 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47482 * 300.00262 * 16 15 14 18 18 C 1.52999 * 109.46961 * 60.00622 * 16 15 14 19 19 C 1.50706 * 109.47161 * 179.97438 * 16 15 14 20 20 C 1.33388 * 125.20278 * 179.97438 * 19 16 15 21 21 C 1.38426 * 114.91704 * 179.97438 * 20 19 16 22 22 C 1.33380 * 114.92268 * 0.02562 * 21 20 19 23 23 S 1.75881 * 109.59563 * 359.75703 * 22 21 20 24 24 H 1.08995 * 109.47228 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46836 * 300.00664 * 1 2 3 26 26 H 1.09004 * 109.46793 * 60.00576 * 1 2 3 27 27 H 1.09000 * 109.46970 * 185.00305 * 4 2 1 28 28 H 1.09005 * 109.46947 * 305.00235 * 4 2 1 29 29 H 0.97000 * 119.99462 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.47297 * 174.99847 * 13 2 1 31 31 H 1.09001 * 109.47200 * 54.99735 * 13 2 1 32 32 H 1.00904 * 110.99757 * 303.95568 * 14 13 2 33 33 H 1.09001 * 109.46885 * 59.99661 * 15 14 13 34 34 H 1.08996 * 109.46969 * 300.00582 * 15 14 13 35 35 H 1.09002 * 109.47153 * 59.99783 * 17 16 15 36 36 H 1.09001 * 109.46832 * 299.99974 * 17 16 15 37 37 H 1.09004 * 109.47261 * 179.97438 * 17 16 15 38 38 H 1.09002 * 109.46716 * 299.99630 * 18 16 15 39 39 H 1.09000 * 109.47486 * 59.99547 * 18 16 15 40 40 H 1.09001 * 109.47362 * 180.02562 * 18 16 15 41 41 H 1.07998 * 122.53841 * 359.96206 * 20 19 16 42 42 H 1.08002 * 122.53571 * 180.02562 * 21 20 19 43 43 H 1.08004 * 125.20431 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6415 0.0569 -2.4766 6 1 1.0801 0.9740 -2.3758 7 6 1.9925 -0.4025 -3.7282 8 7 1.6451 0.2769 -4.7994 9 14 2.9628 -1.9893 -3.9026 10 1 2.0235 -3.1335 -4.0187 11 1 3.8110 -1.9196 -5.1195 12 1 3.8253 -2.1759 -2.7082 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.1245 -0.6269 3.6674 16 6 1.7022 0.1912 4.8892 17 6 2.3124 1.5915 4.8012 18 6 0.1766 0.3011 4.9268 19 6 2.1872 -0.4908 6.1425 20 6 1.9919 -0.0459 7.3848 21 6 2.5301 -0.8424 8.3809 22 6 3.1628 -1.9337 7.9475 23 16 3.0915 -1.9986 6.1913 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 3.1264 -0.7996 -1.2055 28 1 1.6054 -1.7200 -1.2950 29 1 1.8924 -0.0462 -5.6799 30 1 3.1263 -0.7995 1.2057 31 1 1.6053 -1.7197 1.2953 32 1 1.9882 0.9874 2.3967 33 1 3.2114 -0.7050 3.6408 34 1 1.6902 -1.6246 3.7298 35 1 1.9613 2.0845 3.8947 36 1 3.3993 1.5131 4.7744 37 1 2.0111 2.1745 5.6715 38 1 -0.1745 0.7942 4.0204 39 1 -0.2581 -0.6965 4.9895 40 1 -0.1243 0.8844 5.7971 41 1 1.4548 0.8666 7.5973 42 1 2.4442 -0.5987 9.4295 43 1 3.6417 -2.6677 8.5786 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602554043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:34 Heat of formation + Delta-G solvation = 7.585906 kcal Electronic energy + Delta-G solvation = -19700.093822 eV Core-core repulsion = 16870.934344 eV Total energy + Delta-G solvation = -2829.159478 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.10932 -37.29764 -35.71527 -33.10187 -31.67200 -28.74237 -27.59867 -27.36621 -26.37217 -24.87425 -23.62843 -21.94354 -20.20797 -19.09117 -18.99106 -17.18020 -16.66066 -15.81654 -15.54460 -14.76722 -14.57929 -14.19490 -14.05886 -13.59072 -13.50019 -13.02258 -12.87406 -12.65313 -12.43500 -12.39355 -12.10964 -11.87602 -11.66669 -11.57263 -11.34687 -11.15115 -11.06813 -10.94790 -10.71643 -10.58408 -10.40530 -9.77818 -9.72064 -9.38889 -9.03918 -8.80609 -8.66743 -8.50117 -8.18591 -6.00489 -3.97251 0.83215 1.45538 1.84781 2.56500 3.32679 3.40012 3.43606 4.16477 4.48289 4.59086 4.71642 4.84733 4.87062 5.07218 5.30984 5.33162 5.36205 5.49889 5.51988 5.58603 5.68450 5.76320 5.82139 5.82355 5.84905 5.97600 6.04460 6.10072 6.16771 6.27132 6.31203 6.35514 6.43699 6.60586 6.85798 7.04974 7.16255 7.23957 7.33089 7.47870 7.58980 7.84629 8.59166 9.05374 9.62614 11.12976 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031897 B = 0.003147 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.623385 B = 8896.342325 C = 9465.052409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 H 0.059 0.941 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.061 3.939 14 N -0.681 5.681 15 C 0.062 3.938 16 C 0.008 3.992 17 C -0.139 4.139 18 C -0.125 4.125 19 C -0.151 4.151 20 C -0.146 4.146 21 C -0.132 4.132 22 C -0.228 4.228 23 S 0.099 5.901 24 H 0.038 0.962 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.012 0.988 28 H 0.011 0.989 29 H 0.262 0.738 30 H 0.024 0.976 31 H 0.066 0.934 32 H 0.339 0.661 33 H 0.030 0.970 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.720 -1.742 26.625 26.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.092 4.092 3 H 0.078 0.922 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.068 4.068 14 N -0.312 5.312 15 C -0.068 4.068 16 C 0.005 3.995 17 C -0.198 4.198 18 C -0.184 4.184 19 C -0.269 4.269 20 C -0.176 4.176 21 C -0.162 4.162 22 C -0.363 4.363 23 S 0.364 5.636 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.030 0.970 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.158 0.842 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.665 -3.071 25.394 25.633 hybrid contribution 1.079 0.156 0.903 1.416 sum 2.744 -2.915 26.297 26.600 Atomic orbital electron populations 1.21597 0.95241 1.00632 1.00666 1.21000 0.96360 0.98977 0.92847 0.92236 1.19617 0.95695 0.95904 0.93520 1.21134 1.35194 1.09564 0.89085 0.90817 1.25029 0.95682 0.96931 0.95971 1.69917 1.47271 1.39315 0.97991 0.86808 0.80653 0.84410 0.77567 1.20364 1.21516 1.19147 1.22186 0.97120 0.97823 0.89645 1.60528 1.63833 1.05828 1.01042 1.22028 0.97228 0.97892 0.89633 1.19146 0.96828 0.94576 0.88940 1.21918 1.00556 0.94697 1.02594 1.21764 0.92173 1.02061 1.02361 1.24652 1.04598 0.98994 0.98626 1.20015 1.04176 1.02238 0.91174 1.20140 1.00339 0.95132 1.00610 1.25637 1.08880 1.03828 0.97948 1.84452 1.54096 1.22082 1.02947 0.94249 0.93664 0.92288 0.96983 0.97062 0.92851 0.95818 0.91539 0.84189 0.95235 0.90861 0.91115 0.92689 0.92216 0.90266 0.92768 0.93228 0.84502 0.84619 0.82236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.89 37.16 0.33 -2.01 16 2 C -0.07 -1.42 2.48 -90.61 -0.22 -1.64 16 3 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.01 -0.23 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.47 8.96 -34.44 -0.31 -14.78 16 6 H 0.07 2.23 7.30 -52.48 -0.38 1.85 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.07 13.96 55.43 0.77 -27.29 16 9 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 13 C 0.06 0.98 5.07 -3.82 -0.02 0.96 16 14 N -0.68 -9.06 5.17 -113.79 -0.59 -9.65 16 15 C 0.06 0.74 3.73 -3.83 -0.01 0.72 16 16 C 0.01 0.08 0.73 -155.66 -0.11 -0.04 16 17 C -0.14 -1.29 8.01 37.16 0.30 -0.99 16 18 C -0.13 -1.26 8.18 37.16 0.30 -0.96 16 19 C -0.15 -1.53 5.13 -36.00 -0.18 -1.71 16 20 C -0.15 -1.35 9.31 -41.21 -0.38 -1.74 16 21 C -0.13 -1.13 10.18 -41.21 -0.42 -1.55 16 22 C -0.23 -1.99 11.23 29.03 0.33 -1.66 16 23 S 0.10 1.00 21.84 -107.50 -2.35 -1.35 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 26 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 27 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 28 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.34 4.28 6.77 -39.29 -0.27 4.02 16 33 H 0.03 0.36 7.97 -51.93 -0.41 -0.05 16 34 H 0.07 0.92 7.95 -51.93 -0.41 0.50 16 35 H 0.07 0.65 6.57 -51.93 -0.34 0.31 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.49 7.94 -51.93 -0.41 0.08 16 38 H 0.08 0.86 7.60 -51.93 -0.39 0.47 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.44 7.94 -51.93 -0.41 0.02 16 41 H 0.14 1.08 8.01 -52.49 -0.42 0.66 16 42 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 350.87 15.07 5.29 5.29 Total: -1.00 -30.05 350.87 -9.69 -39.74 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.54 Total: -0.07 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: -0.61 Total: -23.93 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.19 Total: -36.94 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.35 Total: -1.35 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.05 -9.69 -39.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602554043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.323 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds