Wall clock time and date at job start Tue Mar 31 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47228 * 2 1 4 4 C 1.53004 * 109.47180 * 239.99350 * 2 1 3 5 5 C 1.50702 * 109.46975 * 65.00513 * 4 2 1 6 6 H 1.08005 * 119.99834 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00042 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00098 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99796 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.46980 * 90.00443 * 9 7 5 11 11 H 1.48503 * 109.46956 * 210.00288 * 9 7 5 12 12 H 1.48503 * 109.47277 * 329.99964 * 9 7 5 13 13 C 1.53002 * 109.46761 * 119.99769 * 2 1 3 14 14 N 1.46900 * 109.47312 * 294.99961 * 13 2 1 15 15 C 1.46896 * 111.00713 * 179.97438 * 14 13 2 16 16 C 1.52992 * 109.47500 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47482 * 300.00262 * 16 15 14 18 18 C 1.52999 * 109.46961 * 60.00622 * 16 15 14 19 19 C 1.50706 * 109.47161 * 179.97438 * 16 15 14 20 20 C 1.33388 * 125.20278 * 179.97438 * 19 16 15 21 21 C 1.38426 * 114.91704 * 179.97438 * 20 19 16 22 22 C 1.33380 * 114.92268 * 0.02562 * 21 20 19 23 23 S 1.75881 * 109.59563 * 359.75703 * 22 21 20 24 24 H 1.08995 * 109.47228 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46836 * 300.00664 * 1 2 3 26 26 H 1.09004 * 109.46793 * 60.00576 * 1 2 3 27 27 H 1.09000 * 109.46970 * 185.00305 * 4 2 1 28 28 H 1.09005 * 109.46947 * 305.00235 * 4 2 1 29 29 H 0.97000 * 119.99462 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.47297 * 174.99847 * 13 2 1 31 31 H 1.09001 * 109.47200 * 54.99735 * 13 2 1 32 32 H 1.00904 * 110.99757 * 303.95568 * 14 13 2 33 33 H 1.09001 * 109.46885 * 59.99661 * 15 14 13 34 34 H 1.08996 * 109.46969 * 300.00582 * 15 14 13 35 35 H 1.09002 * 109.47153 * 59.99783 * 17 16 15 36 36 H 1.09001 * 109.46832 * 299.99974 * 17 16 15 37 37 H 1.09004 * 109.47261 * 179.97438 * 17 16 15 38 38 H 1.09002 * 109.46716 * 299.99630 * 18 16 15 39 39 H 1.09000 * 109.47486 * 59.99547 * 18 16 15 40 40 H 1.09001 * 109.47362 * 180.02562 * 18 16 15 41 41 H 1.07998 * 122.53841 * 359.96206 * 20 19 16 42 42 H 1.08002 * 122.53571 * 180.02562 * 21 20 19 43 43 H 1.08004 * 125.20431 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6415 0.0569 -2.4766 6 1 1.0801 0.9740 -2.3758 7 6 1.9925 -0.4025 -3.7282 8 7 1.6451 0.2769 -4.7994 9 14 2.9628 -1.9893 -3.9026 10 1 2.0235 -3.1335 -4.0187 11 1 3.8110 -1.9196 -5.1195 12 1 3.8253 -2.1759 -2.7082 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.1245 -0.6269 3.6674 16 6 1.7022 0.1912 4.8892 17 6 2.3124 1.5915 4.8012 18 6 0.1766 0.3011 4.9268 19 6 2.1872 -0.4908 6.1425 20 6 1.9919 -0.0459 7.3848 21 6 2.5301 -0.8424 8.3809 22 6 3.1628 -1.9337 7.9475 23 16 3.0915 -1.9986 6.1913 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 3.1264 -0.7996 -1.2055 28 1 1.6054 -1.7200 -1.2950 29 1 1.8924 -0.0462 -5.6799 30 1 3.1263 -0.7995 1.2057 31 1 1.6053 -1.7197 1.2953 32 1 1.9882 0.9874 2.3967 33 1 3.2114 -0.7050 3.6408 34 1 1.6902 -1.6246 3.7298 35 1 1.9613 2.0845 3.8947 36 1 3.3993 1.5131 4.7744 37 1 2.0111 2.1745 5.6715 38 1 -0.1745 0.7942 4.0204 39 1 -0.2581 -0.6965 4.9895 40 1 -0.1243 0.8844 5.7971 41 1 1.4548 0.8666 7.5973 42 1 2.4442 -0.5987 9.4295 43 1 3.6417 -2.6677 8.5786 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602554043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:34 Heat of formation + Delta-G solvation = -8.714876 kcal Electronic energy + Delta-G solvation = -19700.800677 eV Core-core repulsion = 16870.934344 eV Total energy + Delta-G solvation = -2829.866333 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.92804 -38.35631 -36.95423 -34.81776 -33.34482 -29.66465 -29.25195 -28.12232 -27.55099 -26.06916 -24.67784 -23.55759 -21.15410 -20.57717 -19.67627 -18.94703 -17.85935 -16.74717 -16.54329 -16.33266 -15.75947 -15.47606 -15.28498 -14.83750 -14.56106 -14.37391 -14.14316 -13.71962 -13.46901 -13.42351 -13.13635 -13.06068 -12.93066 -12.75040 -12.72249 -12.45513 -12.21318 -12.10517 -11.91501 -11.89946 -11.69172 -11.46426 -11.35343 -11.15201 -10.98495 -10.73357 -9.50206 -9.42713 -9.26898 -8.25658 -6.27636 0.14563 0.75241 1.16277 1.35854 1.37100 1.48801 1.90484 2.37726 3.09620 3.14937 3.78215 3.84040 3.99732 4.14791 4.27978 4.31004 4.31967 4.49509 4.62015 4.67988 4.72074 4.74647 4.86454 4.87986 4.91306 4.97238 5.02739 5.06220 5.11262 5.11773 5.26980 5.37823 5.41285 5.42639 5.45634 5.52759 5.56611 5.64744 5.72299 5.73990 6.06500 6.35466 6.49280 6.80059 7.35881 8.91082 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031897 B = 0.003147 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.623385 B = 8896.342325 C = 9465.052409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.068 4.068 3 H 0.052 0.948 4 C -0.008 4.008 5 C -0.517 4.517 6 H 0.036 0.964 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.248 1.248 13 C 0.074 3.926 14 N -0.677 5.677 15 C 0.067 3.933 16 C 0.014 3.986 17 C -0.137 4.137 18 C -0.122 4.122 19 C -0.165 4.165 20 C -0.145 4.145 21 C -0.138 4.138 22 C -0.225 4.225 23 S 0.065 5.935 24 H 0.041 0.959 25 H 0.068 0.932 26 H 0.026 0.974 27 H 0.014 0.986 28 H 0.015 0.985 29 H 0.264 0.736 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.345 0.655 33 H 0.027 0.973 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.063 0.937 41 H 0.152 0.848 42 H 0.159 0.841 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.396 -2.695 29.194 29.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 H 0.070 0.930 4 C -0.046 4.046 5 C -0.555 4.555 6 H 0.054 0.946 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.771 3.229 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.172 1.172 13 C -0.055 4.055 14 N -0.309 5.309 15 C -0.063 4.063 16 C 0.011 3.989 17 C -0.196 4.196 18 C -0.180 4.180 19 C -0.283 4.283 20 C -0.175 4.175 21 C -0.168 4.168 22 C -0.360 4.360 23 S 0.329 5.671 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.045 0.955 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.164 0.836 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.169 0.831 42 H 0.177 0.823 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 2.338 -4.017 27.992 28.375 hybrid contribution 0.817 0.537 0.168 0.992 sum 3.155 -3.481 28.160 28.549 Atomic orbital electron populations 1.21495 0.94908 1.00618 1.00209 1.20868 0.96559 0.98459 0.92808 0.92982 1.19577 0.95792 0.95745 0.93441 1.21452 1.34174 1.08691 0.91164 0.94555 1.25985 0.97045 1.00882 0.95583 1.70072 1.49159 1.41594 0.98689 0.85709 0.79370 0.79679 0.78179 1.19366 1.21183 1.17202 1.21903 0.96935 0.97553 0.89122 1.60453 1.63883 1.05965 1.00632 1.22000 0.96941 0.97790 0.89527 1.19054 0.96869 0.94705 0.88226 1.21907 1.00232 0.94260 1.03165 1.21722 0.92018 1.01658 1.02571 1.24647 1.05554 0.99152 0.98900 1.20278 1.03619 1.02644 0.90936 1.20442 0.99833 0.94797 1.01707 1.25916 1.08766 1.04389 0.96953 1.84552 1.54852 1.22794 1.04874 0.93987 0.91298 0.95457 0.96748 0.96651 0.92703 0.95747 0.91401 0.83570 0.95517 0.91538 0.91198 0.93078 0.90945 0.91112 0.93627 0.91833 0.83084 0.82312 0.80300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.31 8.89 71.98 0.64 -3.67 16 2 C -0.07 -2.60 2.48 -10.79 -0.03 -2.63 16 3 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.01 -0.36 3.52 29.85 0.10 -0.25 16 5 C -0.52 -29.84 8.96 25.60 0.23 -29.61 16 6 H 0.04 2.30 7.30 -2.91 -0.02 2.28 16 7 C 0.00 0.06 5.47 84.65 0.46 0.53 16 8 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 9 Si 0.95 45.01 27.47 68.60 1.88 46.89 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 13 C 0.07 2.27 5.07 86.30 0.44 2.71 16 14 N -0.68 -16.99 5.17 -513.91 -2.65 -19.64 16 15 C 0.07 1.50 3.73 86.30 0.32 1.82 16 16 C 0.01 0.26 0.73 -52.93 -0.04 0.22 16 17 C -0.14 -2.28 8.01 71.98 0.58 -1.70 16 18 C -0.12 -2.23 8.18 71.98 0.59 -1.64 16 19 C -0.16 -3.05 5.13 24.59 0.13 -2.93 16 20 C -0.14 -2.32 9.31 21.22 0.20 -2.12 16 21 C -0.14 -1.99 10.18 21.21 0.22 -1.77 16 22 C -0.23 -3.44 11.23 66.72 0.75 -2.69 16 23 S 0.06 1.22 21.84 -56.49 -1.23 -0.01 16 24 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.07 2.23 7.75 -2.39 -0.02 2.21 16 26 H 0.03 1.16 6.95 -2.38 -0.02 1.15 16 27 H 0.01 0.66 7.20 -2.39 -0.02 0.65 16 28 H 0.02 0.70 7.57 -2.38 -0.02 0.69 16 29 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.34 8.16 6.77 -89.69 -0.61 7.55 16 33 H 0.03 0.62 7.97 -2.39 -0.02 0.60 16 34 H 0.07 1.59 7.95 -2.39 -0.02 1.57 16 35 H 0.07 1.16 6.57 -2.39 -0.02 1.15 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 1.01 7.94 -2.38 -0.02 0.99 16 38 H 0.07 1.41 7.60 -2.39 -0.02 1.40 16 39 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.06 0.97 7.94 -2.39 -0.02 0.95 16 41 H 0.15 1.92 8.01 -2.91 -0.02 1.90 16 42 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 43 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -65.11 350.87 3.18 -61.93 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.30 Total: 14.87 kcal Atomic # 6 Polarization: -48.32 SS G_CDS: 4.59 Total: -43.73 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -2.36 Total: -79.95 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.89 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -1.23 Total: -0.01 kcal Total: -65.11 3.18 -61.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602554043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.214 kcal (2) G-P(sol) polarization free energy of solvation -65.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds